Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Forward (+)

38736113 .. 38745264

Gene Structure 9152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG153300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTACGAAAAATTTCCTTTGGAAGGAACCGAGAAGCAACACGTGCGCCGACTCAGTAAACTATCTTCTAAGATTCGCAAGGTGGTGTTACAAAGGCTACCGTCACCTGCAGGTGAGTTTATCTTTCTCAGAATTTCCCCCATTAAGCAAAGCCTCACCCTTTCCAAAACGGACTTCACTTTTCACTCTTCTCACAAAACCAGAAAAAAGCTGAAACTTCTGCTGCGACTTCTCGTACTCATGTACCCTTCATCCTCATCATCCTCGTCCCAAAAGCCCATGGGCCCAAGCCCAACCGGCATCACCCGCTACGGCTCCGCTCCGGGCTCCCTCCTCACCTCCGCCGTCGACTCCGTCATTGGAGCAGTCGCCGAGCGTGAATTCTCCCCCCTCCGACCTGCTTCCTTCGTCGGCCGATACTTATCCGGAGGCGGCGGCGCAGATGGCGACTCCTCCTCCCTCACCTCCGAGTCAACCTTCAGAGTCAACCCATCCAACGCTAACAAGGAGGCCACGAAGCCGCTGCCCAGATCGTACGGTTTGGGCGAGTTGGCGGCCGCGATTGGATCTTCTTCTTCTACCTCGTGTTCTTCCTCGTCTTTGGTTCGCCAGAGAAGCTCTCCAGCTGGCTTTCTGAGCCATCTCACTGACAACAATGGAGGATTTTCAGTTACACGAGGAAGTGGAAGCTATAGCTCACAAGGTGGGCCTAATGGTGGCCATGGAGGAACAAGGTTGAAGTCCCAGTTGAGCTTCACTAGGCAAGATTCTCTTTCTCAAATCTCTGAAGTTAGTGAAAATGCTGTCGAAGGTGTTAGCTCTACCAGTGGCCAACATAGTGCCATGCATTCTTATCCCGCTAGTAGCTTTGGGATGGACTCCTGGGATAATACCAATTCTATTGTCTTTTCTGCTCCAACAAGTAAACGAGCTAAAAATATGGATGGTGACATATTTAACTGCCTCAATACCTTAGAATCTCAGTTTAGCCTGCCCCAGACAACTTTAGAAATGGCAACAGTGGAGAAGCTACTACACATCCCTGAAGATTCAGTTCCTTGCAAAATCCGTGCTAAGCGTGGCTGTGCAACTCATCCCAGAAGCATTGCTGAGAGGGTTAGTAACATTAAAGAGATAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

380

Amino Acids

40.62

Weight (kDa)

9.77

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	101, 115
Acc36I	ACCTGC	3 cut(s)	101, 115, 406
AccBSI	CCGCTC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	1 cut(s)	560
AccIII	TCCGGA	1 cut(s)	425
AciI	CCGC	9 cut(s)	307, 318, 342, 432, 435, 521, 554, 558, 858
AclWI	GGATC	1 cut(s)	574
AcoI	YGGCCR	4 cut(s)	412, 555, 718, 829
AcsI	RAATTY	3 cut(s)	11, 132, 380
AcuI	CTGAAG	3 cut(s)	463, 807, 1065
AcvI	CACGTG	1 cut(s)	43
AdeI	CACNNNGTG	1 cut(s)	704
AfaI	GTAC	4 cut(s)	5, 237, 245, 536
AfiI	CCNNNNNNNGG	2 cut(s)	23, 716
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	739
AjnI	CCWGG	1 cut(s)	881
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AlwI	GGATC	1 cut(s)	574
Aor13HI	TCCGGA	1 cut(s)	425
AoxI	GGCC	7 cut(s)	283, 412, 510, 555, 707, 718, 829
ApaI	GGGCCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	223, 523
ApoI	RAATTY	3 cut(s)	11, 132, 380
Asp700I	GAANNNNTTC	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	48, 440
AspS9I	GGNCC	3 cut(s)	283, 284, 707
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	7 cut(s)	96, 125, 148, 295, 328, 454, 959
BaeGI	GKGCMC	1 cut(s)	287
BaeI	ACNNNNGTAYC	2 cut(s)	227, 260
BalI	TGGCCA	2 cut(s)	720, 831
BanII	GRGCYC	2 cut(s)	287, 329
BarI	GAAGNNNNNNTAC	2 cut(s)	49, 81
BauI	CACGAG	2 cut(s)	583, 675
BbrPI	CACGTG	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	210, 510
BccI	CCATC	5 cut(s)	437, 499, 648, 868, 938
BceAI	ACGGC	2 cut(s)	328, 329
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BciT130I	CCWGG	1 cut(s)	883
BcnI	CCSGG	1 cut(s)	324
BfaI	CTAG	2 cut(s)	759, 861
BfmI	CTRYAG	2 cut(s)	108, 691
BfuAI	ACCTGC	3 cut(s)	101, 115, 406
BglI	GCCNNNNNGGC	1 cut(s)	297
BisI	GCNGC	7 cut(s)	224, 433, 436, 521, 524, 555, 558
BlpI	GCTNAGC	1 cut(s)	1074
BlsI	GCNGC	7 cut(s)	225, 434, 437, 522, 525, 556, 559
Bme1390I	CCNGG	2 cut(s)	324, 883
BmgT120I	GGNCC	3 cut(s)	283, 284, 707
BmiI	GGNNCC	4 cut(s)	28, 285, 316, 328
BmrFI	CCNGG	2 cut(s)	324, 883
BmrI	ACTGGG	1 cut(s)	739
BmsI	GCATC	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	739
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BpmI	CTGGAG	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	1074
BpuMI	CCSGG	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	43
BsaBI	GATNNNNATC	1 cut(s)	421
BsaJI	CCNNGG	3 cut(s)	279, 721, 882
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 716
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	745, 825
Bse3DI	GCAATG	1 cut(s)	1104
Bse8I	GATNNNNATC	1 cut(s)	421
BseAI	TCCGGA	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	883
BseDI	CCNNGG	3 cut(s)	279, 721, 882
BseGI	GGATG	7 cut(s)	251, 260, 491, 879, 949, 1038, 1093
BseJI	GATNNNNATC	1 cut(s)	421
BseLI	CCNNNNNNNGG	2 cut(s)	23, 716
BseMI	GCAATG	1 cut(s)	1104
BseMII	CTCAG	5 cut(s)	67, 142, 626, 995, 1101
BseNI	ACTGG	2 cut(s)	745, 825
BseRI	GAGGAG	3 cut(s)	323, 442, 445
BseSI	GKGCMC	1 cut(s)	287
BseX3I	CGGCCG	2 cut(s)	412, 555
BseXI	GCAGC	2 cut(s)	210, 510
Bsh1236I	CGCG	1 cut(s)	560
Bsh1285I	CGRYCG	2 cut(s)	415, 558
BshFI	GGCC	7 cut(s)	285, 414, 512, 557, 709, 720, 831
BsiEI	CGRYCG	2 cut(s)	415, 558
BsiSI	CCGG	3 cut(s)	297, 323, 426
BsiWI	CGTACG	1 cut(s)	534
BslFI	GGGAC	2 cut(s)	253, 727
BslI	CCNNNNNNNGG	2 cut(s)	23, 716
BsmFI	GGGAC	2 cut(s)	253, 727
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	7 cut(s)	285, 414, 512, 557, 709, 720, 831
Bsp120I	GGGCCC	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	287, 329
Bsp13I	TCCGGA	1 cut(s)	425
Bsp143I	GATC	2 cut(s)	530, 566
Bsp1720I	GCTNAGC	1 cut(s)	1074
Bsp19I	CCATGG	2 cut(s)	279, 721
BspACI	CCGC	9 cut(s)	307, 318, 342, 432, 435, 521, 554, 558, 858
BspANI	GGCC	7 cut(s)	285, 414, 512, 557, 709, 720, 831
BspCNI	CTCAG	5 cut(s)	66, 141, 627, 994, 1102
BspEI	TCCGGA	1 cut(s)	425
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	4 cut(s)	28, 285, 316, 328
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	3 cut(s)	101, 115, 406
BspPI	GGATC	1 cut(s)	574
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	1104
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	745, 825
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	279, 721, 882
BssMI	GATC	2 cut(s)	530, 566
BssSI	CACGAG	2 cut(s)	583, 675
BssT1I	CCWWGG	2 cut(s)	279, 721
Bst2BI	CACGAG	2 cut(s)	583, 675
Bst2UI	CCWGG	1 cut(s)	883
Bst4CI	ACNGT	3 cut(s)	102, 539, 1021
Bst6I	CTCTTC	1 cut(s)	193
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	628, 992
BstDEI	CTNAG	8 cut(s)	53, 69, 128, 635, 973, 981, 1074, 1110
BstDSI	CCRYGG	2 cut(s)	279, 721
BstENI	CCTNNNNNAGG	1 cut(s)	21
BstF5I	GGATG	7 cut(s)	251, 260, 491, 879, 949, 1038, 1093
BstFNI	CGCG	1 cut(s)	560
BstHHI	GCGC	2 cut(s)	48, 440
BstKTI	GATC	2 cut(s)	533, 569
BstMBI	GATC	2 cut(s)	530, 566
BstMCI	CGRYCG	2 cut(s)	415, 558
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 297, 306, 444, 615, 636
BstNI	CCWGG	1 cut(s)	883
BstSCI	CCNGG	2 cut(s)	322, 881
BstSFI	CTRYAG	2 cut(s)	108, 691
BstSLI	GKGCMC	1 cut(s)	287
BstUI	CGCG	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	210, 510
BstX2I	RGATCY	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	566
BstZI	CGGCCG	2 cut(s)	412, 555
BsuRI	GGCC	7 cut(s)	285, 414, 512, 557, 709, 720, 831
BtgI	CCRYGG	2 cut(s)	279, 721
BtsCI	GGATG	7 cut(s)	251, 260, 491, 879, 949, 1038, 1093
BtsIMutI	CAGTG	3 cut(s)	645, 832, 1026
BveI	ACCTGC	3 cut(s)	101, 115, 406
Cac8I	GCNNGC	2 cut(s)	628, 992
CciNI	GCGGCCGC	1 cut(s)	555
CfoI	GCGC	2 cut(s)	48, 440
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	3 cut(s)	283, 284, 707
Csp6I	GTAC	4 cut(s)	4, 236, 244, 535
CviAII	CATG	4 cut(s)	241, 280, 722, 844
CviQI	GTAC	4 cut(s)	4, 236, 244, 535
DdeI	CTNAG	8 cut(s)	53, 69, 128, 635, 973, 981, 1074, 1110
DpnI	GATC	2 cut(s)	532, 568
DpnII	GATC	2 cut(s)	530, 566
DraIII	CACNNNGTG	1 cut(s)	704
EaeI	YGGCCR	4 cut(s)	412, 555, 718, 829
EagI	CGGCCG	2 cut(s)	412, 555
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
EciI	GGCGGA	1 cut(s)	331
EclXI	CGGCCG	2 cut(s)	412, 555
Eco130I	CCWWGG	2 cut(s)	279, 721
Eco24I	GRGCYC	2 cut(s)	287, 329
Eco52I	CGGCCG	2 cut(s)	412, 555
Eco57I	CTGAAG	3 cut(s)	463, 807, 1065
Eco72I	CACGTG	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	881
EcoT14I	CCWWGG	2 cut(s)	279, 721
EcoT22I	ATGCAT	1 cut(s)	849
EcoT38I	GRGCYC	2 cut(s)	287, 329
ErhI	CCWWGG	2 cut(s)	279, 721
FaeI	CATG	4 cut(s)	244, 283, 725, 847
FaiI	YATR	9 cut(s)	242, 281, 693, 723, 837, 845, 941, 953, 1141
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	2 cut(s)	253, 727
FatI	CATG	4 cut(s)	240, 279, 721, 843
FauI	CCCGC	2 cut(s)	314, 865
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	7 cut(s)	224, 433, 436, 521, 524, 555, 558
FokI	GGATG	7 cut(s)	238, 247, 478, 886, 956, 1025, 1080
FriOI	GRGCYC	2 cut(s)	287, 329
Fsp4HI	GCNGC	7 cut(s)	224, 433, 436, 521, 524, 555, 558
FspBI	CTAG	2 cut(s)	759, 861
GlaI	GCGC	2 cut(s)	47, 439
GluI	GCNGC	7 cut(s)	224, 433, 436, 521, 524, 555, 558
GsuI	CTGGAG	1 cut(s)	606
HaeIII	GGCC	7 cut(s)	285, 414, 512, 557, 709, 720, 831
HapII	CCGG	3 cut(s)	297, 323, 426
HhaI	GCGC	2 cut(s)	48, 440
Hin1II	CATG	4 cut(s)	244, 283, 725, 847
Hin6I	GCGC	2 cut(s)	46, 438
HinP1I	GCGC	2 cut(s)	46, 438
HincII	GTYRAC	3 cut(s)	349, 474, 487
HindII	GTYRAC	3 cut(s)	349, 474, 487
HpaII	CCGG	3 cut(s)	297, 323, 426
HphI	GGTGA	7 cut(s)	96, 125, 148, 295, 328, 454, 959
Hpy166II	GTNNAC	5 cut(s)	59, 349, 474, 487, 926
Hpy188I	TCNGA	6 cut(s)	131, 395, 469, 482, 636, 787
Hpy188III	TCNNGA	1 cut(s)	426
Hpy8I	GTNNAC	5 cut(s)	59, 349, 474, 487, 926
Hpy99I	CGWCG	2 cut(s)	350, 413
HpyAV	CCTTC	5 cut(s)	17, 258, 415, 487, 803
HpyCH4III	ACNGT	3 cut(s)	102, 539, 1021
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	110, 847, 1062, 1088
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 297, 306, 444, 615, 636
HpyF3I	CTNAG	8 cut(s)	53, 69, 128, 635, 973, 981, 1074, 1110
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	244, 283, 725, 847
HspAI	GCGC	2 cut(s)	46, 438
Kpn2I	TCCGGA	1 cut(s)	425
Kzo9I	GATC	2 cut(s)	530, 566
LmnI	GCTCC	5 cut(s)	320, 325, 332, 362, 919
Lsp1109I	GCAGC	2 cut(s)	210, 510
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	2 cut(s)	759, 861
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	5 cut(s)	87, 102, 670, 947, 1121
MalI	GATC	2 cut(s)	532, 568
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	2 cut(s)	530, 566
MboII	GAAGA	7 cut(s)	57, 180, 561, 564, 567, 582, 1058
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	2 cut(s)	287, 329
MlsI	TGGCCA	2 cut(s)	720, 831
MluCI	AATT	4 cut(s)	11, 132, 380, 895
MluNI	TGGCCA	2 cut(s)	720, 831
MlyI	GAGTC	6 cut(s)	45, 344, 443, 479, 492, 872
MmeI	TCCRAC	3 cut(s)	418, 519, 941
Mox20I	TGGCCA	2 cut(s)	720, 831
Mph1103I	ATGCAT	1 cut(s)	849
MroI	TCCGGA	1 cut(s)	425
MroXI	GAANNNNTTC	1 cut(s)	12
MscI	TGGCCA	2 cut(s)	720, 831
MseI	TTAA	3 cut(s)	144, 957, 1128
Msp20I	TGGCCA	2 cut(s)	720, 831
MspA1I	CMGCKG	2 cut(s)	523, 626
MspI	CCGG	3 cut(s)	297, 323, 426
MspR9I	CCNGG	2 cut(s)	324, 883
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	1 cut(s)	883
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	6 cut(s)	43, 297, 306, 444, 615, 636
NciI	CCSGG	1 cut(s)	324
NcoI	CCATGG	2 cut(s)	279, 721
NdeII	GATC	2 cut(s)	530, 566
NlaIII	CATG	4 cut(s)	244, 283, 725, 847
NlaIV	GGNNCC	4 cut(s)	28, 285, 316, 328
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	2 cut(s)	102, 947
NotI	GCGGCCGC	1 cut(s)	555
NsiI	ATGCAT	1 cut(s)	849
PaqCI	CACCTGC	2 cut(s)	101, 115
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PctI	GAATGC	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	4 cut(s)	73, 767, 977, 1049
Pfl23II	CGTACG	1 cut(s)	534
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	7 cut(s)	225, 434, 437, 522, 525, 556, 559
PleI	GAGTC	6 cut(s)	45, 344, 443, 478, 491, 872
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
PpsI	GAGTC	6 cut(s)	45, 344, 443, 478, 491, 872
Ppu21I	YACGTR	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	881
PspCI	CACGTG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	881
PspLI	CGTACG	1 cut(s)	534
PspN4I	GGNNCC	4 cut(s)	28, 285, 316, 328
PspOMI	GGGCCC	1 cut(s)	283
PspPI	GGNCC	3 cut(s)	283, 284, 707
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	566
PsyI	GACNNNGTC	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	4 cut(s)	5, 237, 245, 536
RsaNI	GTAC	4 cut(s)	4, 236, 244, 535
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	3 cut(s)	144, 957, 1128
SatI	GCNGC	7 cut(s)	224, 433, 436, 521, 524, 555, 558
Sau3AI	GATC	2 cut(s)	530, 566
Sau96I	GGNCC	3 cut(s)	283, 284, 707
SbfI	CCTGCAGG	1 cut(s)	112
SchI	GAGTC	6 cut(s)	45, 344, 443, 479, 492, 872
ScrFI	CCNGG	2 cut(s)	324, 883
SdaI	CCTGCAGG	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	287, 329
SfaNI	GCATC	1 cut(s)	309
SfcI	CTRYAG	2 cut(s)	108, 691
Sse8387I	CCTGCAGG	1 cut(s)	112
Sse9I	AATT	4 cut(s)	11, 132, 380, 895
SsiI	CCGC	9 cut(s)	307, 318, 342, 432, 435, 521, 554, 558, 858
SspMI	CTAG	2 cut(s)	759, 861
StyD4I	CCNGG	2 cut(s)	322, 881
StyI	CCWWGG	2 cut(s)	279, 721
TaaI	ACNGT	3 cut(s)	102, 539, 1021
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	348, 807
TasI	AATT	4 cut(s)	11, 132, 380, 895
TauI	GCSGC	5 cut(s)	435, 438, 523, 557, 560
TfiI	GAWTC	4 cut(s)	73, 767, 977, 1049
Tru1I	TTAA	3 cut(s)	144, 957, 1128
Tru9I	TTAA	3 cut(s)	144, 957, 1128
TscAI	CASTG	3 cut(s)	652, 832, 1026
TseFI	GTSAC	2 cut(s)	102, 947
TseI	GCWGC	2 cut(s)	223, 523
Tsp45I	GTSAC	2 cut(s)	102, 947
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	3 cut(s)	185, 343, 1058
TspRI	CASTG	3 cut(s)	652, 832, 1026
Tth111I	GACNNNGTC	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	21
XapI	RAATTY	3 cut(s)	11, 132, 380
XmiI	GTMKAC	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	2 cut(s)	759, 861
Zsp2I	ATGCAT	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.