Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Forward (+)

15482031 .. 15489340

Gene Structure 7310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTACCCTTCATCCTCGTCATCCTCGTCCCAGAACCCCATGGGCCCAAGCCCAACCGGCCTCACCCGCTACGGCTCCGCCCCTGGCTCCCTCATCACCTCCGCCGTCGACTCCGTCATCGCCGAACGTGAATTCTCCTCCCTCCGGCCGCATCCTCCTTCTTCCTTCGTCGGCCGCTACTTCCCCGGAGGAGACGGCGACTCCTCCTCCCTCACCTCCTCCGAGTCAACCTTCAAAATCAACGGCAAGGAGACCGCCACGAAGAAGCCGCTGGTCAGATCGTACGGCTTGGGCGAGATGGCGGCGGCGATTGGATCTTCTTCTTCTACTTCTTGCTCTTCGTCGGCTCTGGTTCGCCAGAGAAGCTCGCCAGCTGGCTTTCTCAGCCATCTCACTGATAACAATGGAGGATTTTCAGTTACACGGGGAACTGGAAGCTATAGCTCACAAGGTGGCCCTAATGGTGGCCATGGAGTGACAAGGTTGAAGTCCCAGTTGAGTTTCACTAGGCAAGATTCTCTTTCACAAATCTCTGAAGTTAGTGAAAATGCTGGCGAAGGTGTTAGCTCTAACAGTGGCCACCATAGTTCCATGCATTCTTATCCTGCTACTAGCTTTGGGATGGAGTCCTGGGATAATACCAATTCTATTGTCTTTTCTGCTCCACCAAGTAAACGAGCCAAAAATATGGATGGTGACATATTTAACTGCCTCAATACCTTAGAATCGCAGTTTAGCCTGCCCCAGACAACTTTAGAAATGGCAACGGTAGAGAAACTACTACACATCCCTGAAGATTCAGTTCCTTGCAAAATCCGTGCTAAGCGTGGCTGTGCGACACATCCCAGAAGCATTGCTGAGAGGGAGAGAAGAACTAGAATAAGTGGGAAGTTAAAGAAACTGCAAGACCTTGTTCCTAACATGGATAAGCAAACAAGCTATGCCGACATGTTGGACTTGGCTGTGCAACATATCAAGGGCCTACAAAATCAAGTTCAGAATCTTTACAAAGATCTTGAAGGCTGCACTTGCGGGTGCAAACCATCCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

351

Amino Acids

37.27

Weight (kDa)

8.78

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	284 - 329	3.7e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	4 cut(s)	146, 172, 466, 577
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	2 cut(s)	555, 813
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	2 cut(s)	5, 284
AfiI	CCNNNNNNNGG	2 cut(s)	144, 464
AflIII	ACRYGT	1 cut(s)	948
AgsI	TTSAA	3 cut(s)	235, 487, 1019
AjnI	CCWGG	2 cut(s)	82, 629
AluBI	AGCT	7 cut(s)	366, 374, 438, 444, 567, 615, 939
AluI	AGCT	7 cut(s)	366, 374, 438, 444, 567, 615, 939
Alw26I	GTCTC	2 cut(s)	186, 245
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	8 cut(s)	43, 58, 146, 172, 454, 466, 577, 979
ApaI	GGGCCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	1023
ApoI	RAATTY	1 cut(s)	131
AspS9I	GGNCC	4 cut(s)	43, 44, 455, 979
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	4 cut(s)	55, 88, 205, 707
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	2 cut(s)	468, 579
BanII	GRGCYC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	1010
BccI	CCATC	5 cut(s)	292, 396, 616, 686, 1051
BceAI	ACGGC	5 cut(s)	88, 89, 211, 259, 301
BciT130I	CCWGG	2 cut(s)	84, 631
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	186, 245
BfaI	CTAG	3 cut(s)	507, 612, 876
BfmI	CTRYAG	1 cut(s)	439
BglI	GCCNNNNNGGC	1 cut(s)	57
BglII	AGATCT	1 cut(s)	1012
BisI	GCNGC	6 cut(s)	149, 175, 269, 303, 306, 1024
BlpI	GCTNAGC	1 cut(s)	822
BlsI	GCNGC	6 cut(s)	150, 176, 270, 304, 307, 1025
Bme1390I	CCNGG	3 cut(s)	84, 186, 631
BmgT120I	GGNCC	4 cut(s)	43, 44, 455, 979
BmiI	GGNNCC	3 cut(s)	45, 76, 88
BmrFI	CCNGG	3 cut(s)	84, 186, 631
BmrI	ACTGGG	1 cut(s)	487
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	487
Bpu1102I	GCTNAGC	1 cut(s)	822
BpuMI	CCSGG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	1050
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	5 cut(s)	39, 82, 184, 469, 630
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 191, 215, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 464
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	436, 493
Bse3DI	GCAATG	1 cut(s)	852
BseBI	CCWGG	2 cut(s)	84, 631
BseDI	CCNNGG	5 cut(s)	39, 82, 184, 469, 630
BseGI	GGATG	8 cut(s)	11, 20, 151, 627, 697, 786, 841, 1043
BseLI	CCNNNNNNNGG	2 cut(s)	144, 464
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	2 cut(s)	397, 849
BseNI	ACTGG	2 cut(s)	436, 493
BseRI	GAGGAG	5 cut(s)	127, 193, 196, 204, 208
BseSI	GKGCMC	1 cut(s)	47
BseX3I	CGGCCG	2 cut(s)	146, 172
BseXI	GCAGC	1 cut(s)	1010
BsgI	GTGCAG	1 cut(s)	1009
Bsh1285I	CGRYCG	2 cut(s)	149, 175
BshFI	GGCC	8 cut(s)	45, 60, 148, 174, 456, 468, 579, 981
BsiEI	CGRYCG	2 cut(s)	149, 175
BsiSI	CCGG	3 cut(s)	57, 145, 186
BsiWI	CGTACG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	13, 475
BslI	CCNNNNNNNGG	2 cut(s)	144, 464
BsmAI	GTCTC	2 cut(s)	186, 245
BsmBI	CGTCTC	1 cut(s)	186
BsmFI	GGGAC	2 cut(s)	13, 475
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	8 cut(s)	45, 60, 148, 174, 456, 468, 579, 981
Bso31I	GGTCTC	1 cut(s)	245
Bsp120I	GGGCCC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	278, 314, 1012
Bsp1720I	GCTNAGC	1 cut(s)	822
Bsp19I	CCATGG	2 cut(s)	39, 469
BspANI	GGCC	8 cut(s)	45, 60, 148, 174, 456, 468, 579, 981
BspCNI	CTCAG	2 cut(s)	396, 850
BspLI	GGNNCC	3 cut(s)	45, 76, 88
BspPI	GGATC	1 cut(s)	322
BspQI	GCTCTTC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	852
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	436, 493
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	5 cut(s)	39, 82, 184, 469, 630
BssMI	GATC	3 cut(s)	278, 314, 1012
BssT1I	CCWWGG	2 cut(s)	39, 469
Bst2UI	CCWGG	2 cut(s)	84, 631
Bst4CI	ACNGT	2 cut(s)	575, 769
Bst6I	CTCTTC	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	1050
BstC8I	GCNNGC	5 cut(s)	368, 372, 376, 553, 740
BstDEI	CTNAG	4 cut(s)	383, 721, 822, 858
BstDSI	CCRYGG	2 cut(s)	39, 469
BstF5I	GGATG	8 cut(s)	11, 20, 151, 627, 697, 786, 841, 1043
BstKTI	GATC	3 cut(s)	281, 317, 1015
BstMAI	GTCTC	2 cut(s)	186, 245
BstMBI	GATC	3 cut(s)	278, 314, 1012
BstMCI	CGRYCG	2 cut(s)	149, 175
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 66, 363, 384, 1029
BstNI	CCWGG	2 cut(s)	84, 631
BstNSI	RCATGY	1 cut(s)	952
BstSCI	CCNGG	3 cut(s)	82, 184, 629
BstSFI	CTRYAG	1 cut(s)	439
BstSLI	GKGCMC	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	1010
BstX2I	RGATCY	2 cut(s)	314, 1012
BstXI	CCANNNNNNTGG	1 cut(s)	688
BstYI	RGATCY	2 cut(s)	314, 1012
BstZI	CGGCCG	2 cut(s)	146, 172
BsuRI	GGCC	8 cut(s)	45, 60, 148, 174, 456, 468, 579, 981
BtgI	CCRYGG	2 cut(s)	39, 469
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	8 cut(s)	11, 20, 151, 627, 697, 786, 841, 1043
BtsIMutI	CAGTG	2 cut(s)	393, 580
Cac8I	GCNNGC	5 cut(s)	368, 372, 376, 553, 740
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	4 cut(s)	43, 44, 455, 979
Csp6I	GTAC	2 cut(s)	4, 283
CviAII	CATG	5 cut(s)	40, 470, 592, 922, 949
CviQI	GTAC	2 cut(s)	4, 283
DdeI	CTNAG	4 cut(s)	383, 721, 822, 858
DpnI	GATC	3 cut(s)	280, 316, 1014
DpnII	GATC	3 cut(s)	278, 314, 1012
DraIII	CACNNNGTG	1 cut(s)	452
EaeI	YGGCCR	4 cut(s)	146, 172, 466, 577
EagI	CGGCCG	2 cut(s)	146, 172
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
EciI	GGCGGA	2 cut(s)	67, 91
EclXI	CGGCCG	2 cut(s)	146, 172
Eco130I	CCWWGG	2 cut(s)	39, 469
Eco24I	GRGCYC	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	245
Eco52I	CGGCCG	2 cut(s)	146, 172
Eco57I	CTGAAG	2 cut(s)	555, 813
EcoO109I	RGGNCCY	1 cut(s)	979
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	82, 629
EcoT14I	CCWWGG	2 cut(s)	39, 469
EcoT22I	ATGCAT	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	47
ErhI	CCWWGG	2 cut(s)	39, 469
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	5 cut(s)	43, 473, 595, 925, 952
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FaqI	GGGAC	2 cut(s)	13, 475
FatI	CATG	5 cut(s)	39, 469, 591, 921, 948
FauI	CCCGC	2 cut(s)	74, 1025
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	6 cut(s)	149, 175, 269, 303, 306, 1024
FokI	GGATG	7 cut(s)	7, 138, 634, 704, 773, 828, 1030
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	6 cut(s)	149, 175, 269, 303, 306, 1024
FspBI	CTAG	3 cut(s)	507, 612, 876
GluI	GCNGC	6 cut(s)	149, 175, 269, 303, 306, 1024
HaeIII	GGCC	8 cut(s)	45, 60, 148, 174, 456, 468, 579, 981
HapII	CCGG	3 cut(s)	57, 145, 186
Hin1II	CATG	5 cut(s)	43, 473, 595, 925, 952
HincII	GTYRAC	2 cut(s)	109, 228
HindII	GTYRAC	2 cut(s)	109, 228
HinfI	GANTC	8 cut(s)	110, 200, 224, 515, 626, 725, 797, 1000
HpaII	CCGG	3 cut(s)	57, 145, 186
HphI	GGTGA	4 cut(s)	55, 88, 205, 707
Hpy166II	GTNNAC	3 cut(s)	109, 228, 674
Hpy188I	TCNGA	4 cut(s)	223, 278, 535, 999
Hpy188III	TCNNGA	1 cut(s)	1016
Hpy8I	GTNNAC	3 cut(s)	109, 228, 674
Hpy99I	CGWCG	3 cut(s)	110, 173, 346
HpyAV	CCTTC	6 cut(s)	18, 168, 175, 241, 551, 1013
HpyCH4III	ACNGT	2 cut(s)	575, 769
HpyCH4IV	ACGT	2 cut(s)	127, 1049
HpyCH4V	TGCA	6 cut(s)	595, 810, 904, 967, 1026, 1038
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 66, 363, 384, 1029
HpyF3I	CTNAG	4 cut(s)	383, 721, 822, 858
HpySE526I	ACGT	2 cut(s)	127, 1049
Hsp92II	CATG	5 cut(s)	43, 473, 595, 925, 952
Kzo9I	GATC	3 cut(s)	278, 314, 1012
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	3 cut(s)	80, 92, 667
Lsp1109I	GCAGC	1 cut(s)	1010
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	3 cut(s)	507, 612, 876
MaeII	ACGT	2 cut(s)	127, 1049
MaeIII	GTNAC	3 cut(s)	418, 475, 695
MalI	GATC	3 cut(s)	280, 316, 1014
MboI	GATC	3 cut(s)	278, 314, 1012
MboII	GAAGA	8 cut(s)	153, 274, 309, 312, 315, 330, 806, 882
MflI	RGATCY	2 cut(s)	314, 1012
MhlI	GDGCHC	1 cut(s)	47
MlsI	TGGCCA	2 cut(s)	468, 579
MluCI	AATT	2 cut(s)	131, 643
MluNI	TGGCCA	2 cut(s)	468, 579
MlyI	GAGTC	4 cut(s)	104, 194, 233, 635
MmeI	TCCRAC	1 cut(s)	933
Mox20I	TGGCCA	2 cut(s)	468, 579
Mph1103I	ATGCAT	1 cut(s)	597
MscI	TGGCCA	2 cut(s)	468, 579
MseI	TTAA	2 cut(s)	705, 893
Msp20I	TGGCCA	2 cut(s)	468, 579
MspA1I	CMGCKG	2 cut(s)	271, 374
MspI	CCGG	3 cut(s)	57, 145, 186
MspR9I	CCNGG	3 cut(s)	84, 186, 631
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	2 cut(s)	84, 631
MwoI	GCNNNNNNNGC	5 cut(s)	57, 66, 363, 384, 1029
NciI	CCSGG	1 cut(s)	186
NcoI	CCATGG	2 cut(s)	39, 469
NdeII	GATC	3 cut(s)	278, 314, 1012
NlaIII	CATG	5 cut(s)	43, 473, 595, 925, 952
NlaIV	GGNNCC	3 cut(s)	45, 76, 88
NmuCI	GTSAC	2 cut(s)	475, 695
NsiI	ATGCAT	1 cut(s)	597
NspI	RCATGY	1 cut(s)	952
PciI	ACATGT	1 cut(s)	948
PciSI	GCTCTTC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	2 cut(s)	23, 291
PctI	GAATGC	1 cut(s)	595
PfeI	GAWTC	4 cut(s)	515, 725, 797, 1000
Pfl23II	CGTACG	1 cut(s)	282
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	6 cut(s)	150, 176, 270, 304, 307, 1025
PleI	GAGTC	4 cut(s)	104, 194, 232, 634
PpsI	GAGTC	4 cut(s)	104, 194, 232, 634
Ppu21I	YACGTR	1 cut(s)	1050
PscI	ACATGT	1 cut(s)	948
Psp6I	CCWGG	2 cut(s)	82, 629
PspGI	CCWGG	2 cut(s)	82, 629
PspLI	CGTACG	1 cut(s)	282
PspN4I	GGNNCC	3 cut(s)	45, 76, 88
PspOMI	GGGCCC	1 cut(s)	43
PspPI	GGNCC	4 cut(s)	43, 44, 455, 979
PsuI	RGATCY	2 cut(s)	314, 1012
PsyI	GACNNNGTC	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	2 cut(s)	5, 284
RsaNI	GTAC	2 cut(s)	4, 283
SalI	GTCGAC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	705, 893
SatI	GCNGC	6 cut(s)	149, 175, 269, 303, 306, 1024
Sau3AI	GATC	3 cut(s)	278, 314, 1012
Sau96I	GGNCC	4 cut(s)	43, 44, 455, 979
SchI	GAGTC	4 cut(s)	104, 194, 233, 635
ScrFI	CCNGG	3 cut(s)	84, 186, 631
SduI	GDGCHC	1 cut(s)	47
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	439
Sse9I	AATT	2 cut(s)	131, 643
SspMI	CTAG	3 cut(s)	507, 612, 876
StyD4I	CCNGG	3 cut(s)	82, 184, 629
StyI	CCWWGG	2 cut(s)	39, 469
TaaI	ACNGT	2 cut(s)	575, 769
TaiI	ACGT	2 cut(s)	130, 1052
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	131, 643
TauI	GCSGC	5 cut(s)	151, 177, 271, 305, 308
TfiI	GAWTC	4 cut(s)	515, 725, 797, 1000
Tru1I	TTAA	2 cut(s)	705, 893
Tru9I	TTAA	2 cut(s)	705, 893
TscAI	CASTG	2 cut(s)	400, 580
TseFI	GTSAC	2 cut(s)	475, 695
TseI	GCWGC	1 cut(s)	1023
Tsp45I	GTSAC	2 cut(s)	475, 695
TspGWI	ACGGA	2 cut(s)	103, 806
TspRI	CASTG	2 cut(s)	400, 580
Tth111I	GACNNNGTC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	952
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	3 cut(s)	507, 612, 876
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.