Prupe.1G181300_v2.0.a1

Transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
15892648 .. 15900021
7374 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G181300.1

Sequence Viewer

Length: 1125 bp
ATGTATCCCTCAACCTCATCCTCCTCATCCCAAAATCCCATGGGCCCAGGCCCAAGTGCAACCGGGCTGACCCGCTACGGCTCCGCCCCGGGCTCCCTCCTAACCTCGGCCGTCGATTCCGTCATCGGCGCCGTCGCAGACCGCGAATTCTCAGCCCTCCGATCGCAGCCCCACCTCGGCCACTACTTCTCTGGCGACGGCCACGGCGACGACTCCTCTCTCACCAGCTCCGAGTCAACCTTCAAAGTCAACTCATCCAACGGTGGCACGGACGCAACCAAGCCATTGATCCGATCGTACGGCCTGAATGAGATGGCGAACGCGATTGGATCTCCTACTTCTTCTTCTTCTTGCTCTTCGCCGTCAGCCCTGGTTCGCCAGAGAAGCTCTCCAGCTGGCTTCCTCAGCCATCTCACCGCTCCTGATAACAATGGAGGATTTTCTGTTACAAGGGGAGCTGGAATCTATAGCTCACAAGGTGGCACTAATGGCGGCCATGGACATGGAGTAACGAGGTTAAAGTCTCAGTTGAGCTTCACTGGGCAAGATTCTCTTTCTCAAATATCTGAAGTAAGTGAAAATGCCATGGAAGGTGTTAGCTCCAACAATGGCCACCATAGGGCCATGCATTCTTATCCCACTACTAGCTTTGGGATGGAATCCTGGGATAATACCAATTCTATTGTCTTTTCGGCTCCACCAAGCAAACGAGCTAAAAATATGGATGGTGACTTATTTAACTGCCTCAATGCTTTAGAATCTCAGTTTAGCCTTCCCCAGACATCTTTAGAAATGGCTACAGTAGAGAAGCTACTGCACATCCCTGAGGATTCTGTTCCTTGCAAAATTCGGGCAAAACGTGGCTGCGCAACTCATCCCAGAAGCATAGCGGAGAGGGAGAGAAGAACTAGAATAAGCGGGAAGTTGAAGAAACTACAAGACCTTGTTCCAAACATGGATAAGGTGATAACCGATGGCTCTTATAAATATGGATTGGTGAAGCAAACAAGCTATGCGGACATGTTGGACTTGGCTGTACAACATATCAAAGGCCTTCAAAATCAAGTCGAGGATCTTCACAAGGATCTTGATAATTGCACTTGTGGCTGCAAACCAAACACATAA

Protein Analysis

375

Amino Acids

39.7

Weight (kDa)

7.21

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 984
Acc16I TGCGCA 1 cut(s) 868
AccB1I GGYRCC 1 cut(s) 128
AccBSI CCGCTC 1 cut(s) 419
AccII CGCG 2 cut(s) 144, 323
AciI CCGC 8 cut(s) 73, 84, 142, 417, 492, 890, 918, 1016
AclWI GGATC 4 cut(s) 283, 337, 1080, 1092
AcoI YGGCCR 5 cut(s) 108, 178, 199, 493, 610
AcsI RAATTY 2 cut(s) 146, 846
AcuI CTGAAG 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 479
AfaI GTAC 2 cut(s) 299, 1038
AfiI CCNNNNNNNGG 3 cut(s) 106, 176, 619
AflIII ACRYGT 1 cut(s) 1020
AgsI TTSAA 3 cut(s) 244, 928, 1058
AjnI CCWGG 3 cut(s) 46, 369, 662
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 4 cut(s) 283, 337, 1080, 1092
Ama87I CYCGRG 1 cut(s) 88
ApaI GGGCCC 1 cut(s) 47
ApeKI GCWGC 3 cut(s) 166, 864, 1107
ApoI RAATTY 2 cut(s) 146, 846
AspLEI GCGC 2 cut(s) 131, 869
AspS9I GGNCC 4 cut(s) 43, 44, 50, 621
AsuC2I CCSGG 3 cut(s) 64, 89, 90
AsuHPI GGTGA 5 cut(s) 214, 406, 740, 976, 1009
AvaI CYCGRG 1 cut(s) 88
AxyI CCTNAGG 1 cut(s) 825
BaeGI GKGCMC 1 cut(s) 47
BalI TGGCCA 1 cut(s) 612
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 2 cut(s) 47, 95
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 3 cut(s) 178, 851, 1094
BccI CCATC 5 cut(s) 307, 417, 649, 719, 968
BceAI ACGGC 7 cut(s) 94, 95, 116, 214, 220, 316, 346
BciT130I CCWGG 3 cut(s) 48, 371, 664
BciVI GTATCC 1 cut(s) 15
BcnI CCSGG 3 cut(s) 64, 89, 90
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 2 cut(s) 645, 909
BfmI CTRYAG 2 cut(s) 466, 798
BfoI RGCGCY 1 cut(s) 132
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 4 cut(s) 167, 493, 865, 1108
BlsI GCNGC 4 cut(s) 168, 494, 866, 1109
Bme1390I CCNGG 6 cut(s) 48, 64, 89, 90, 371, 664
BmeT110I CYCGRG 1 cut(s) 88
BmgT120I GGNCC 4 cut(s) 43, 44, 50, 621
BmiI GGNNCC 5 cut(s) 45, 82, 94, 130, 696
BmrFI CCNGG 6 cut(s) 48, 64, 89, 90, 371, 664
BmrI ACTGGG 1 cut(s) 549
BmuI ACTGGG 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 373, 405
BpmI CTGGAG 1 cut(s) 375
Bpu10I CCTNAGC 1 cut(s) 404
BpuMI CCSGG 3 cut(s) 64, 89, 90
BsaHI GRCGYC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 176, 619
Bse1I ACTGG 1 cut(s) 544
Bse21I CCTNAGG 1 cut(s) 825
BseBI CCWGG 3 cut(s) 48, 371, 664
BseGI GGATG 7 cut(s) 17, 26, 254, 660, 730, 819, 874
BseLI CCNNNNNNNGG 3 cut(s) 106, 176, 619
BseMII CTCAG 5 cut(s) 165, 418, 539, 776, 816
BseNI ACTGG 1 cut(s) 544
BseRI GAGGAG 2 cut(s) 13, 205
BseSI GKGCMC 1 cut(s) 47
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 3 cut(s) 178, 851, 1094
BsgI GTGCAG 1 cut(s) 800
Bsh1236I CGCG 2 cut(s) 144, 323
Bsh1285I CGRYCG 3 cut(s) 111, 164, 296
BshNI GGYRCC 1 cut(s) 128
BsiEI CGRYCG 3 cut(s) 111, 164, 296
BsiHKCI CYCGRG 1 cut(s) 88
BsiSI CCGG 2 cut(s) 63, 89
BsiWI CGTACG 1 cut(s) 297
BslI CCNNNNNNNGG 3 cut(s) 106, 176, 619
BsmAI GTCTC 1 cut(s) 528
BsmI GAATGC 1 cut(s) 628
BsoBI CYCGRG 1 cut(s) 88
Bsp120I GGGCCC 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 47, 95
Bsp1407I TGTACA 1 cut(s) 1036
Bsp143I GATC 6 cut(s) 161, 288, 293, 329, 1072, 1084
Bsp19I CCATGG 3 cut(s) 39, 496, 585
BspACI CCGC 8 cut(s) 73, 84, 142, 417, 492, 890, 918, 1016
BspCNI CTCAG 5 cut(s) 164, 417, 538, 775, 817
BspFNI CGCG 2 cut(s) 144, 323
BspLI GGNNCC 5 cut(s) 45, 82, 94, 130, 696
BspPI GGATC 4 cut(s) 283, 337, 1080, 1092
BspQI GCTCTTC 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 419
BsrGI TGTACA 1 cut(s) 1036
BsrI ACTGG 1 cut(s) 544
BssMI GATC 6 cut(s) 161, 288, 293, 329, 1072, 1084
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 3 cut(s) 39, 496, 585
Bst2UI CCWGG 3 cut(s) 48, 371, 664
Bst4CI ACNGT 2 cut(s) 263, 802
Bst6I CTCTTC 1 cut(s) 361
BstACI GRCGYC 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 1036
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 5 cut(s) 151, 404, 525, 762, 825
BstDSI CCRYGG 4 cut(s) 39, 202, 496, 585
BstF5I GGATG 7 cut(s) 17, 26, 254, 660, 730, 819, 874
BstFNI CGCG 2 cut(s) 144, 323
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 2 cut(s) 131, 869
BstKTI GATC 6 cut(s) 164, 291, 296, 332, 1075, 1087
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 6 cut(s) 161, 288, 293, 329, 1072, 1084
BstMCI CGRYCG 3 cut(s) 111, 164, 296
BstMWI GCNNNNNNNGC 4 cut(s) 384, 405, 489, 1104
BstNI CCWGG 3 cut(s) 48, 371, 664
BstNSI RCATGY 1 cut(s) 1024
BstSCI CCNGG 6 cut(s) 46, 62, 87, 88, 369, 662
BstSFI CTRYAG 2 cut(s) 466, 798
BstSLI GKGCMC 1 cut(s) 47
BstUI CGCG 2 cut(s) 144, 323
BstV1I GCAGC 3 cut(s) 178, 851, 1094
BstX2I RGATCY 3 cut(s) 329, 1072, 1084
BstXI CCANNNNNNTGG 1 cut(s) 503
BstYI RGATCY 3 cut(s) 329, 1072, 1084
BstZI CGGCCG 1 cut(s) 108
Bsu36I CCTNAGG 1 cut(s) 825
BsuI GTATCC 1 cut(s) 15
BtgI CCRYGG 4 cut(s) 39, 202, 496, 585
BtsCI GGATG 7 cut(s) 17, 26, 254, 660, 730, 819, 874
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 1 cut(s) 397
CfoI GCGC 2 cut(s) 131, 869
Cfr13I GGNCC 4 cut(s) 43, 44, 50, 621
Cfr9I CCCGGG 1 cut(s) 88
CseI GACGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 298, 1037
CviAII CATG 7 cut(s) 40, 497, 503, 586, 625, 955, 1021
CviQI GTAC 2 cut(s) 298, 1037
DdeI CTNAG 5 cut(s) 151, 404, 525, 762, 825
DinI GGCGCC 1 cut(s) 130
DpnI GATC 6 cut(s) 163, 290, 295, 331, 1074, 1086
DpnII GATC 6 cut(s) 161, 288, 293, 329, 1072, 1084
DraIII CACNNNGTG 1 cut(s) 479
EaeI YGGCCR 5 cut(s) 108, 178, 199, 493, 610
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
EciI GGCGGA 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 108
Eco130I CCWWGG 3 cut(s) 39, 496, 585
Eco147I AGGCCT 1 cut(s) 1053
Eco24I GRGCYC 2 cut(s) 47, 95
Eco52I CGGCCG 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 588
Eco81I CCTNAGG 1 cut(s) 825
Eco88I CYCGRG 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 3 cut(s) 46, 369, 662
EcoT14I CCWWGG 3 cut(s) 39, 496, 585
EcoT22I ATGCAT 1 cut(s) 630
EcoT38I GRGCYC 2 cut(s) 47, 95
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
ErhI CCWWGG 3 cut(s) 39, 496, 585
FaeI CATG 7 cut(s) 43, 500, 506, 589, 628, 958, 1024
FalI AAGNNNNNCTT 2 cut(s) 537, 569
FatI CATG 7 cut(s) 39, 496, 502, 585, 624, 954, 1020
FauI CCCGC 2 cut(s) 80, 911
Fnu4HI GCNGC 4 cut(s) 167, 493, 865, 1108
FokI GGATG 7 cut(s) 4, 13, 241, 667, 737, 806, 861
FriOI GRGCYC 2 cut(s) 47, 95
Fsp4HI GCNGC 4 cut(s) 167, 493, 865, 1108
FspBI CTAG 2 cut(s) 645, 909
FspI TGCGCA 1 cut(s) 868
GlaI GCGC 2 cut(s) 130, 868
GluI GCNGC 4 cut(s) 167, 493, 865, 1108
GsuI CTGGAG 1 cut(s) 375
HaeII RGCGCY 1 cut(s) 132
HapII CCGG 2 cut(s) 63, 89
HgaI GACGC 1 cut(s) 281
HhaI GCGC 2 cut(s) 131, 869
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 7 cut(s) 43, 500, 506, 589, 628, 958, 1024
Hin6I GCGC 2 cut(s) 129, 867
HinP1I GCGC 2 cut(s) 129, 867
HincII GTYRAC 2 cut(s) 237, 250
HindII GTYRAC 2 cut(s) 237, 250
HinfI GANTC 8 cut(s) 116, 212, 233, 462, 548, 659, 758, 830
HpaII CCGG 2 cut(s) 63, 89
HphI GGTGA 5 cut(s) 214, 406, 740, 976, 1009
Hpy166II GTNNAC 2 cut(s) 237, 250
Hpy188I TCNGA 4 cut(s) 161, 232, 293, 568
Hpy188III TCNNGA 2 cut(s) 422, 1088
Hpy8I GTNNAC 2 cut(s) 237, 250
Hpy99I CGWCG 4 cut(s) 116, 137, 200, 212
HpyAV CCTTC 4 cut(s) 250, 584, 782, 1064
HpyCH4III ACNGT 2 cut(s) 263, 802
HpyCH4IV ACGT 1 cut(s) 859
HpyCH4V TGCA 6 cut(s) 59, 628, 817, 843, 1098, 1110
HpyF10VI GCNNNNNNNGC 4 cut(s) 384, 405, 489, 1104
HpyF3I CTNAG 5 cut(s) 151, 404, 525, 762, 825
HpySE526I ACGT 1 cut(s) 859
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 7 cut(s) 43, 500, 506, 589, 628, 958, 1024
HspAI GCGC 2 cut(s) 129, 867
KasI GGCGCC 1 cut(s) 128
Kzo9I GATC 6 cut(s) 161, 288, 293, 329, 1072, 1084
LguI GCTCTTC 1 cut(s) 361
LmnI GCTCC 7 cut(s) 86, 98, 233, 424, 455, 605, 700
Lsp1109I GCAGC 3 cut(s) 178, 851, 1094
MaeI CTAG 2 cut(s) 645, 909
MaeII ACGT 1 cut(s) 859
MaeIII GTNAC 3 cut(s) 445, 508, 728
MalI GATC 6 cut(s) 163, 290, 295, 331, 1074, 1086
MbiI CCGCTC 1 cut(s) 419
MboI GATC 6 cut(s) 161, 288, 293, 329, 1072, 1084
MboII GAAGA 7 cut(s) 333, 336, 339, 348, 915, 940, 1067
MflI RGATCY 3 cut(s) 329, 1072, 1084
MhlI GDGCHC 2 cut(s) 47, 95
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 4 cut(s) 146, 676, 846, 1093
MluNI TGGCCA 1 cut(s) 612
Mly113I GGCGCC 1 cut(s) 129
MlyI GAGTC 2 cut(s) 206, 242
MmeI TCCRAC 3 cut(s) 282, 627, 1005
Mox20I TGGCCA 1 cut(s) 612
Mph1103I ATGCAT 1 cut(s) 630
MscI TGGCCA 1 cut(s) 612
MseI TTAA 2 cut(s) 518, 738
MslI CAYNNNNRTG 1 cut(s) 501
Msp20I TGGCCA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 2 cut(s) 63, 89
MspR9I CCNGG 6 cut(s) 48, 64, 89, 90, 371, 664
Mva1269I GAATGC 1 cut(s) 628
MvaI CCWGG 3 cut(s) 48, 371, 664
MvnI CGCG 2 cut(s) 144, 323
MwoI GCNNNNNNNGC 4 cut(s) 384, 405, 489, 1104
NarI GGCGCC 1 cut(s) 129
NciI CCSGG 3 cut(s) 64, 89, 90
NcoI CCATGG 3 cut(s) 39, 496, 585
NdeII GATC 6 cut(s) 161, 288, 293, 329, 1072, 1084
NlaIII CATG 7 cut(s) 43, 500, 506, 589, 628, 958, 1024
NlaIV GGNNCC 5 cut(s) 45, 82, 94, 130, 696
NmeAIII GCCGAG 2 cut(s) 86, 156
NmuCI GTSAC 1 cut(s) 728
NsbI TGCGCA 1 cut(s) 868
NsiI ATGCAT 1 cut(s) 630
NspI RCATGY 1 cut(s) 1024
PceI AGGCCT 1 cut(s) 1053
PciI ACATGT 1 cut(s) 1020
PciSI GCTCTTC 1 cut(s) 361
PcsI WCGNNNNNNNCGW 3 cut(s) 141, 204, 856
PctI GAATGC 1 cut(s) 628
PfeI GAWTC 6 cut(s) 116, 462, 548, 659, 758, 830
Pfl23II CGTACG 1 cut(s) 297
PkrI GCNGC 4 cut(s) 168, 494, 866, 1109
Ple19I CGATCG 2 cut(s) 164, 296
PleI GAGTC 2 cut(s) 206, 241
PluTI GGCGCC 1 cut(s) 132
PpsI GAGTC 2 cut(s) 206, 241
PscI ACATGT 1 cut(s) 1020
PsiI TTATAA 1 cut(s) 984
Psp6I CCWGG 3 cut(s) 46, 369, 662
PspGI CCWGG 3 cut(s) 46, 369, 662
PspLI CGTACG 1 cut(s) 297
PspN4I GGNNCC 5 cut(s) 45, 82, 94, 130, 696
PspOMI GGGCCC 1 cut(s) 43
PspPI GGNCC 4 cut(s) 43, 44, 50, 621
PsuI RGATCY 3 cut(s) 329, 1072, 1084
PvuI CGATCG 2 cut(s) 164, 296
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 299, 1038
RsaNI GTAC 2 cut(s) 298, 1037
RseI CAYNNNNRTG 1 cut(s) 501
SapI GCTCTTC 1 cut(s) 361
SaqAI TTAA 2 cut(s) 518, 738
SatI GCNGC 4 cut(s) 167, 493, 865, 1108
Sau3AI GATC 6 cut(s) 161, 288, 293, 329, 1072, 1084
Sau96I GGNCC 4 cut(s) 43, 44, 50, 621
SchI GAGTC 2 cut(s) 206, 242
ScrFI CCNGG 6 cut(s) 48, 64, 89, 90, 371, 664
SduI GDGCHC 2 cut(s) 47, 95
SfcI CTRYAG 2 cut(s) 466, 798
SfoI GGCGCC 1 cut(s) 130
SmaI CCCGGG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 4 cut(s) 146, 676, 846, 1093
SseBI AGGCCT 1 cut(s) 1053
SsiI CCGC 8 cut(s) 73, 84, 142, 417, 492, 890, 918, 1016
SspDI GGCGCC 1 cut(s) 128
SspMI CTAG 2 cut(s) 645, 909
StuI AGGCCT 1 cut(s) 1053
StyD4I CCNGG 6 cut(s) 46, 62, 87, 88, 369, 662
StyI CCWWGG 3 cut(s) 39, 496, 585
TaaI ACNGT 2 cut(s) 263, 802
TaiI ACGT 1 cut(s) 862
TaqI TCGA 2 cut(s) 114, 1068
TasI AATT 4 cut(s) 146, 676, 846, 1093
TatI WGTACW 1 cut(s) 1036
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 6 cut(s) 116, 462, 548, 659, 758, 830
Tru1I TTAA 2 cut(s) 518, 738
Tru9I TTAA 2 cut(s) 518, 738
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 3 cut(s) 166, 864, 1107
Tsp45I GTSAC 1 cut(s) 728
TspGWI ACGGA 2 cut(s) 109, 284
TspMI CCCGGG 1 cut(s) 88
TspRI CASTG 1 cut(s) 544
XapI RAATTY 2 cut(s) 146, 846
XceI RCATGY 1 cut(s) 1024
XcmI CCANNNNNNNNNTGG 1 cut(s) 188
XmaI CCCGGG 1 cut(s) 88
XspI CTAG 2 cut(s) 645, 909
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.