Rmu_sc0006766.1_g000012

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006766.1
Physical Location & Seq
Reverse (-)
49721 .. 57868
8148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006766.1_g000012.1.cds

Sequence Viewer

Length: 1278 bp
atgcttagtcgaagactgactactgatgtcttgaaccgatttcaggacttgagtaccatcaccttgtacttctgctgcgactcctcgtactcatgtacccttcatcctcatcatcctcgtcccaaaagcccatgggcccaagcccaaccggcatcacccgctacggctccgctccgggctccctcctcacctccgccgtcgactccgtcattggagcagtcgccgagcgtgaattctcccccctccgacctgcttccttcgtcggccgatacttctccgggctacggctccgctccgggctccctcctcacctccgccgtcgactccgtcattggagcagtcgccgagcgtgaattctcccctctccgacctgcttccttcgtcggccgatacttctccggcggcggcggcggcgcagatggcgactcctcctccctcacctccgagtcaaccttcaaagtcaacccatccaacgctgacaaggaggccacgaagccgctgcccagatcgtacggtttgggcgagatggcggccgctattggatcttcgtcatctacctcgtgttcttcctcggctttggttcgccagagaagctctccagctggctttctgagccatctcactgacaacaatggaggattttcagttacacggggaagtggaagctatagctcacaaggtgggcctaatggtggccatggaggaacaaggttgaagtcccagttgagcttcactaggcaagattctctttctcaaatctctgaagttagtgaaaatgctgtcgaaggtgttagctctaccagtggtcaacatagtgccatgcattcttatcccgctagtagctttgggatggactcctgggataataccaattctattgtcttttctgctccaacaagtaaacgagctaaaaatatggatggtgacatatttaactgcctcaataccttagaatctcagtttagcctgccccagacaactttagaaatggcaacagtggagaagctactacacatccctgaagattcagttccttgcaaaatccgtgctaagcgtggctgtgcaactcatcccagaagcattgctgagagggagagaagaactagaataagtgggaagttaaagaaactgcaagaccttgtccctaacatggataagcaaacaagctatgcagacatgttggatttggctgtgcaacacatcaagggtctacaaaatcaagtccagaatcttcacaaagatcttgaaggttgcacttgcggctgcaaacccacataa

Protein Analysis

425

Amino Acids

44.99

Weight (kDa)

8.01

Isoelectric Point (pI)

60.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 258, 379
AccBSI CCGCTC 2 cut(s) 172, 293
AccI GTMKAC 3 cut(s) 200, 321, 1210
AclWI GGATC 1 cut(s) 550
AcoI YGGCCR 4 cut(s) 264, 385, 531, 694
AcsI RAATTY 2 cut(s) 232, 353
AcuI CTGAAG 2 cut(s) 783, 1041
AdeI CACNNNGTG 1 cut(s) 680
AfaI GTAC 5 cut(s) 55, 68, 89, 97, 512
AfiI CCNNNNNNNGG 4 cut(s) 43, 284, 692, 1150
AflIII ACRYGT 1 cut(s) 1176
AgsI TTSAA 4 cut(s) 34, 457, 715, 1247
AjnI CCWGG 1 cut(s) 857
AlwI GGATC 1 cut(s) 550
AoxI GGCC 7 cut(s) 135, 264, 385, 486, 531, 683, 694
ApaI GGGCCC 1 cut(s) 139
ApeKI GCWGC 3 cut(s) 75, 499, 1263
ApoI RAATTY 2 cut(s) 232, 353
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 3 cut(s) 135, 136, 683
AsuC2I CCSGG 3 cut(s) 176, 279, 297
AsuHPI GGTGA 6 cut(s) 52, 147, 180, 301, 430, 935
BaeGI GKGCMC 1 cut(s) 139
BaeI ACNNNNGTAYC 4 cut(s) 37, 70, 79, 112
BalI TGGCCA 1 cut(s) 696
BanII GRGCYC 3 cut(s) 139, 181, 302
BarI GAAGNNNNNNTAC 1 cut(s) 36
BauI CACGAG 1 cut(s) 559
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 3 cut(s) 62, 486, 1250
BccI CCATC 7 cut(s) 65, 413, 475, 520, 624, 844, 914
BceAI ACGGC 4 cut(s) 180, 181, 301, 302
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 1 cut(s) 859
BcnI CCSGG 3 cut(s) 176, 279, 297
BfaI CTAG 3 cut(s) 735, 837, 1104
BfmI CTRYAG 1 cut(s) 667
BfuAI ACCTGC 2 cut(s) 258, 379
BglI GCCNNNNNGGC 1 cut(s) 149
BglII AGATCT 1 cut(s) 1240
BlpI GCTNAGC 1 cut(s) 1050
Bme1390I CCNGG 4 cut(s) 176, 279, 297, 859
BmgT120I GGNCC 3 cut(s) 135, 136, 683
BmiI GGNNCC 5 cut(s) 137, 168, 180, 289, 301
BmrFI CCNGG 4 cut(s) 176, 279, 297, 859
BmrI ACTGGG 1 cut(s) 715
BmsI GCATC 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 715
BpiI GAAGAC 1 cut(s) 19
BplI GAGNNNNNCTC 2 cut(s) 580, 612
BpmI CTGGAG 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 1050
BpuEI CTTGAG 1 cut(s) 70
BpuMI CCSGG 3 cut(s) 176, 279, 297
BsaJI CCNNGG 4 cut(s) 131, 570, 697, 858
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 284, 692, 1150
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 2 cut(s) 721, 801
Bse3DI GCAATG 1 cut(s) 1080
BseBI CCWGG 1 cut(s) 859
BseDI CCNNGG 4 cut(s) 131, 570, 697, 858
BseGI GGATG 7 cut(s) 103, 112, 467, 855, 925, 1014, 1069
BseLI CCNNNNNNNGG 4 cut(s) 43, 284, 692, 1150
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 3 cut(s) 602, 971, 1077
BseNI ACTGG 2 cut(s) 721, 801
BseRI GAGGAG 5 cut(s) 73, 175, 296, 418, 421
BseSI GKGCMC 1 cut(s) 139
BseX3I CGGCCG 3 cut(s) 264, 385, 531
BseXI GCAGC 3 cut(s) 62, 486, 1250
Bsh1285I CGRYCG 3 cut(s) 267, 388, 534
BshFI GGCC 7 cut(s) 137, 266, 387, 488, 533, 685, 696
BsiEI CGRYCG 3 cut(s) 267, 388, 534
BsiSI CCGG 5 cut(s) 149, 175, 278, 296, 399
BsiWI CGTACG 1 cut(s) 510
BslFI GGGAC 3 cut(s) 105, 703, 1127
BslI CCNNNNNNNGG 4 cut(s) 43, 284, 692, 1150
BsmFI GGGAC 3 cut(s) 105, 703, 1127
BsmI GAATGC 1 cut(s) 823
BsnI GGCC 7 cut(s) 137, 266, 387, 488, 533, 685, 696
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 3 cut(s) 139, 181, 302
Bsp143I GATC 3 cut(s) 506, 542, 1240
Bsp1720I GCTNAGC 1 cut(s) 1050
Bsp19I CCATGG 2 cut(s) 131, 697
BspANI GGCC 7 cut(s) 137, 266, 387, 488, 533, 685, 696
BspCNI CTCAG 3 cut(s) 603, 970, 1078
BspLI GGNNCC 5 cut(s) 137, 168, 180, 289, 301
BspMI ACCTGC 2 cut(s) 258, 379
BspPI GGATC 1 cut(s) 550
BsrBI CCGCTC 2 cut(s) 172, 293
BsrDI GCAATG 1 cut(s) 1080
BsrFI RCCGGY 1 cut(s) 148
BsrI ACTGG 2 cut(s) 721, 801
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 4 cut(s) 131, 570, 697, 858
BssMI GATC 3 cut(s) 506, 542, 1240
BssSI CACGAG 1 cut(s) 559
BssT1I CCWWGG 2 cut(s) 131, 697
Bst2BI CACGAG 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 859
Bst4CI ACNGT 2 cut(s) 515, 997
BstC8I GCNNGC 2 cut(s) 604, 968
BstDEI CTNAG 6 cut(s) 5, 611, 949, 957, 1050, 1086
BstDSI CCRYGG 2 cut(s) 131, 697
BstF5I GGATG 7 cut(s) 103, 112, 467, 855, 925, 1014, 1069
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 3 cut(s) 509, 545, 1243
BstMBI GATC 3 cut(s) 506, 542, 1240
BstMCI CGRYCG 3 cut(s) 267, 388, 534
BstMWI GCNNNNNNNGC 8 cut(s) 149, 158, 408, 411, 420, 591, 612, 1260
BstNI CCWGG 1 cut(s) 859
BstNSI RCATGY 1 cut(s) 1180
BstSCI CCNGG 4 cut(s) 174, 277, 295, 857
BstSFI CTRYAG 1 cut(s) 667
BstSLI GKGCMC 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 62, 486, 1250
BstV2I GAAGAC 1 cut(s) 19
BstX2I RGATCY 2 cut(s) 542, 1240
BstYI RGATCY 2 cut(s) 542, 1240
BstZI CGGCCG 3 cut(s) 264, 385, 531
BsuRI GGCC 7 cut(s) 137, 266, 387, 488, 533, 685, 696
BtgI CCRYGG 2 cut(s) 131, 697
BtsCI GGATG 7 cut(s) 103, 112, 467, 855, 925, 1014, 1069
BtsIMutI CAGTG 3 cut(s) 621, 808, 1002
BveI ACCTGC 2 cut(s) 258, 379
Cac8I GCNNGC 2 cut(s) 604, 968
CciNI GCGGCCGC 1 cut(s) 531
CfoI GCGC 1 cut(s) 416
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 3 cut(s) 135, 136, 683
Csp6I GTAC 5 cut(s) 54, 67, 88, 96, 511
CviAII CATG 6 cut(s) 93, 132, 698, 820, 1150, 1177
CviQI GTAC 5 cut(s) 54, 67, 88, 96, 511
DdeI CTNAG 6 cut(s) 5, 611, 949, 957, 1050, 1086
DpnI GATC 3 cut(s) 508, 544, 1242
DpnII GATC 3 cut(s) 506, 542, 1240
DraIII CACNNNGTG 1 cut(s) 680
EaeI YGGCCR 4 cut(s) 264, 385, 531, 694
EagI CGGCCG 3 cut(s) 264, 385, 531
EciI GGCGGA 2 cut(s) 183, 304
EclXI CGGCCG 3 cut(s) 264, 385, 531
Eco130I CCWWGG 2 cut(s) 131, 697
Eco24I GRGCYC 3 cut(s) 139, 181, 302
Eco52I CGGCCG 3 cut(s) 264, 385, 531
Eco57I CTGAAG 2 cut(s) 783, 1041
EcoRI GAATTC 2 cut(s) 232, 353
EcoRII CCWGG 1 cut(s) 857
EcoT14I CCWWGG 2 cut(s) 131, 697
EcoT22I ATGCAT 1 cut(s) 825
EcoT38I GRGCYC 3 cut(s) 139, 181, 302
ErhI CCWWGG 2 cut(s) 131, 697
FaeI CATG 6 cut(s) 96, 135, 701, 823, 1153, 1180
FalI AAGNNNNNCTT 2 cut(s) 732, 764
FaqI GGGAC 3 cut(s) 105, 703, 1127
FatI CATG 6 cut(s) 92, 131, 697, 819, 1149, 1176
FauI CCCGC 2 cut(s) 166, 841
FblI GTMKAC 3 cut(s) 200, 321, 1210
FokI GGATG 7 cut(s) 90, 99, 454, 862, 932, 1001, 1056
FriOI GRGCYC 3 cut(s) 139, 181, 302
FspBI CTAG 3 cut(s) 735, 837, 1104
GlaI GCGC 1 cut(s) 415
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 7 cut(s) 137, 266, 387, 488, 533, 685, 696
HapII CCGG 5 cut(s) 149, 175, 278, 296, 399
HhaI GCGC 1 cut(s) 416
Hin1II CATG 6 cut(s) 96, 135, 701, 823, 1153, 1180
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HincII GTYRAC 5 cut(s) 201, 322, 450, 463, 809
HindII GTYRAC 5 cut(s) 201, 322, 450, 463, 809
HpaII CCGG 5 cut(s) 149, 175, 278, 296, 399
HphI GGTGA 6 cut(s) 52, 147, 180, 301, 430, 935
Hpy166II GTNNAC 7 cut(s) 201, 322, 450, 463, 809, 902, 1211
Hpy188I TCNGA 5 cut(s) 247, 368, 445, 612, 763
Hpy188III TCNNGA 4 cut(s) 31, 44, 1225, 1244
Hpy8I GTNNAC 7 cut(s) 201, 322, 450, 463, 809, 902, 1211
Hpy99I CGWCG 4 cut(s) 202, 265, 323, 386
HpyAV CCTTC 6 cut(s) 110, 267, 388, 463, 779, 1241
HpyCH4III ACNGT 2 cut(s) 515, 997
HpyCH4V TGCA 8 cut(s) 823, 1038, 1064, 1132, 1172, 1195, 1254, 1266
HpyF10VI GCNNNNNNNGC 8 cut(s) 149, 158, 408, 411, 420, 591, 612, 1260
HpyF3I CTNAG 6 cut(s) 5, 611, 949, 957, 1050, 1086
Hsp92II CATG 6 cut(s) 96, 135, 701, 823, 1153, 1180
HspAI GCGC 1 cut(s) 414
Kzo9I GATC 3 cut(s) 506, 542, 1240
LmnI GCTCC 9 cut(s) 172, 177, 184, 214, 293, 298, 305, 335, 895
Lsp1109I GCAGC 3 cut(s) 62, 486, 1250
LweI GCATC 1 cut(s) 161
MaeI CTAG 3 cut(s) 735, 837, 1104
MaeIII GTNAC 2 cut(s) 646, 923
MalI GATC 3 cut(s) 508, 544, 1242
MbiI CCGCTC 2 cut(s) 172, 293
MboI GATC 3 cut(s) 506, 542, 1240
MboII GAAGA 6 cut(s) 24, 537, 558, 1034, 1110, 1223
MflI RGATCY 2 cut(s) 542, 1240
MhlI GDGCHC 3 cut(s) 139, 181, 302
MlsI TGGCCA 1 cut(s) 696
MluCI AATT 3 cut(s) 232, 353, 871
MluNI TGGCCA 1 cut(s) 696
MlyI GAGTC 6 cut(s) 74, 196, 317, 419, 455, 848
MmeI TCCRAC 5 cut(s) 270, 391, 495, 917, 1161
Mox20I TGGCCA 1 cut(s) 696
Mph1103I ATGCAT 1 cut(s) 825
MscI TGGCCA 1 cut(s) 696
MseI TTAA 2 cut(s) 933, 1121
Msp20I TGGCCA 1 cut(s) 696
MspA1I CMGCKG 2 cut(s) 499, 602
MspI CCGG 5 cut(s) 149, 175, 278, 296, 399
MspR9I CCNGG 4 cut(s) 176, 279, 297, 859
Mva1269I GAATGC 1 cut(s) 823
MvaI CCWGG 1 cut(s) 859
MwoI GCNNNNNNNGC 8 cut(s) 149, 158, 408, 411, 420, 591, 612, 1260
NciI CCSGG 3 cut(s) 176, 279, 297
NcoI CCATGG 2 cut(s) 131, 697
NdeII GATC 3 cut(s) 506, 542, 1240
NlaIII CATG 6 cut(s) 96, 135, 701, 823, 1153, 1180
NlaIV GGNNCC 5 cut(s) 137, 168, 180, 289, 301
NmeAIII GCCGAG 3 cut(s) 249, 370, 551
NmuCI GTSAC 1 cut(s) 923
NotI GCGGCCGC 1 cut(s) 531
NsiI ATGCAT 1 cut(s) 825
NspI RCATGY 1 cut(s) 1180
PciI ACATGT 1 cut(s) 1176
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PctI GAATGC 1 cut(s) 823
PfeI GAWTC 4 cut(s) 743, 953, 1025, 1228
Pfl23II CGTACG 1 cut(s) 510
PflFI GACNNNGTC 3 cut(s) 205, 326, 1139
PleI GAGTC 6 cut(s) 74, 196, 317, 419, 454, 848
PpsI GAGTC 6 cut(s) 74, 196, 317, 419, 454, 848
PscI ACATGT 1 cut(s) 1176
Psp6I CCWGG 1 cut(s) 857
PspGI CCWGG 1 cut(s) 857
PspLI CGTACG 1 cut(s) 510
PspN4I GGNNCC 5 cut(s) 137, 168, 180, 289, 301
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 3 cut(s) 135, 136, 683
PsuI RGATCY 2 cut(s) 542, 1240
PsyI GACNNNGTC 3 cut(s) 205, 326, 1139
PvuII CAGCTG 1 cut(s) 602
RsaI GTAC 5 cut(s) 55, 68, 89, 97, 512
RsaNI GTAC 5 cut(s) 54, 67, 88, 96, 511
SalI GTCGAC 2 cut(s) 199, 320
SaqAI TTAA 2 cut(s) 933, 1121
Sau3AI GATC 3 cut(s) 506, 542, 1240
Sau96I GGNCC 3 cut(s) 135, 136, 683
SchI GAGTC 6 cut(s) 74, 196, 317, 419, 455, 848
ScrFI CCNGG 4 cut(s) 176, 279, 297, 859
SduI GDGCHC 3 cut(s) 139, 181, 302
SfaNI GCATC 1 cut(s) 161
SfcI CTRYAG 1 cut(s) 667
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 3 cut(s) 232, 353, 871
SspMI CTAG 3 cut(s) 735, 837, 1104
StyD4I CCNGG 4 cut(s) 174, 277, 295, 857
StyI CCWWGG 2 cut(s) 131, 697
TaaI ACNGT 2 cut(s) 515, 997
TaqI TCGA 4 cut(s) 10, 200, 321, 783
TasI AATT 3 cut(s) 232, 353, 871
TatI WGTACW 1 cut(s) 66
TauI GCSGC 8 cut(s) 405, 408, 411, 414, 499, 533, 536, 1263
TfiI GAWTC 4 cut(s) 743, 953, 1025, 1228
Tru1I TTAA 2 cut(s) 933, 1121
Tru9I TTAA 2 cut(s) 933, 1121
TscAI CASTG 3 cut(s) 628, 808, 1002
TseFI GTSAC 1 cut(s) 923
TseI GCWGC 3 cut(s) 75, 499, 1263
Tsp45I GTSAC 1 cut(s) 923
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 3 cut(s) 195, 316, 1034
TspRI CASTG 3 cut(s) 628, 808, 1002
Tth111I GACNNNGTC 3 cut(s) 205, 326, 1139
XapI RAATTY 2 cut(s) 232, 353
XceI RCATGY 1 cut(s) 1180
XmiI GTMKAC 3 cut(s) 200, 321, 1210
XspI CTAG 3 cut(s) 735, 837, 1104
Zsp2I ATGCAT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.