Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G05805 |
| fragaria_vesca | FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740 |
| malus_domestica | MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1 |
| prunus_persica | Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1 |
| pyrus_communis | pycom04g02710 pycom16g26360 |
| rosa_chinensis | RchiOBHm_Chr4g0409001 |
| rosa_laevigata | RLG00000008598 |
| rosa_multiflora | Rmu_sc0006766.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350 |
| rosa_rugosa | Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500 |
| rosa_samantha | Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 258, 379 |
| AccBSI | CCGCTC | 2 cut(s) | 172, 293 |
| AccI | GTMKAC | 3 cut(s) | 200, 321, 1210 |
| AclWI | GGATC | 1 cut(s) | 550 |
| AcoI | YGGCCR | 4 cut(s) | 264, 385, 531, 694 |
| AcsI | RAATTY | 2 cut(s) | 232, 353 |
| AcuI | CTGAAG | 2 cut(s) | 783, 1041 |
| AdeI | CACNNNGTG | 1 cut(s) | 680 |
| AfaI | GTAC | 5 cut(s) | 55, 68, 89, 97, 512 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 43, 284, 692, 1150 |
| AflIII | ACRYGT | 1 cut(s) | 1176 |
| AgsI | TTSAA | 4 cut(s) | 34, 457, 715, 1247 |
| AjnI | CCWGG | 1 cut(s) | 857 |
| AlwI | GGATC | 1 cut(s) | 550 |
| AoxI | GGCC | 7 cut(s) | 135, 264, 385, 486, 531, 683, 694 |
| ApaI | GGGCCC | 1 cut(s) | 139 |
| ApeKI | GCWGC | 3 cut(s) | 75, 499, 1263 |
| ApoI | RAATTY | 2 cut(s) | 232, 353 |
| AspLEI | GCGC | 1 cut(s) | 416 |
| AspS9I | GGNCC | 3 cut(s) | 135, 136, 683 |
| AsuC2I | CCSGG | 3 cut(s) | 176, 279, 297 |
| AsuHPI | GGTGA | 6 cut(s) | 52, 147, 180, 301, 430, 935 |
| BaeGI | GKGCMC | 1 cut(s) | 139 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 37, 70, 79, 112 |
| BalI | TGGCCA | 1 cut(s) | 696 |
| BanII | GRGCYC | 3 cut(s) | 139, 181, 302 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 36 |
| BauI | CACGAG | 1 cut(s) | 559 |
| BbsI | GAAGAC | 1 cut(s) | 19 |
| BbvI | GCAGC | 3 cut(s) | 62, 486, 1250 |
| BccI | CCATC | 7 cut(s) | 65, 413, 475, 520, 624, 844, 914 |
| BceAI | ACGGC | 4 cut(s) | 180, 181, 301, 302 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 481, 515 |
| BciT130I | CCWGG | 1 cut(s) | 859 |
| BcnI | CCSGG | 3 cut(s) | 176, 279, 297 |
| BfaI | CTAG | 3 cut(s) | 735, 837, 1104 |
| BfmI | CTRYAG | 1 cut(s) | 667 |
| BfuAI | ACCTGC | 2 cut(s) | 258, 379 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 149 |
| BglII | AGATCT | 1 cut(s) | 1240 |
| BlpI | GCTNAGC | 1 cut(s) | 1050 |
| Bme1390I | CCNGG | 4 cut(s) | 176, 279, 297, 859 |
| BmgT120I | GGNCC | 3 cut(s) | 135, 136, 683 |
| BmiI | GGNNCC | 5 cut(s) | 137, 168, 180, 289, 301 |
| BmrFI | CCNGG | 4 cut(s) | 176, 279, 297, 859 |
| BmrI | ACTGGG | 1 cut(s) | 715 |
| BmsI | GCATC | 1 cut(s) | 161 |
| BmuI | ACTGGG | 1 cut(s) | 715 |
| BpiI | GAAGAC | 1 cut(s) | 19 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 580, 612 |
| BpmI | CTGGAG | 1 cut(s) | 582 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1050 |
| BpuEI | CTTGAG | 1 cut(s) | 70 |
| BpuMI | CCSGG | 3 cut(s) | 176, 279, 297 |
| BsaJI | CCNNGG | 4 cut(s) | 131, 570, 697, 858 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 416, 446 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 43, 284, 692, 1150 |
| Bse118I | RCCGGY | 1 cut(s) | 148 |
| Bse1I | ACTGG | 2 cut(s) | 721, 801 |
| Bse3DI | GCAATG | 1 cut(s) | 1080 |
| BseBI | CCWGG | 1 cut(s) | 859 |
| BseDI | CCNNGG | 4 cut(s) | 131, 570, 697, 858 |
| BseGI | GGATG | 7 cut(s) | 103, 112, 467, 855, 925, 1014, 1069 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 43, 284, 692, 1150 |
| BseMI | GCAATG | 1 cut(s) | 1080 |
| BseMII | CTCAG | 3 cut(s) | 602, 971, 1077 |
| BseNI | ACTGG | 2 cut(s) | 721, 801 |
| BseRI | GAGGAG | 5 cut(s) | 73, 175, 296, 418, 421 |
| BseSI | GKGCMC | 1 cut(s) | 139 |
| BseX3I | CGGCCG | 3 cut(s) | 264, 385, 531 |
| BseXI | GCAGC | 3 cut(s) | 62, 486, 1250 |
| Bsh1285I | CGRYCG | 3 cut(s) | 267, 388, 534 |
| BshFI | GGCC | 7 cut(s) | 137, 266, 387, 488, 533, 685, 696 |
| BsiEI | CGRYCG | 3 cut(s) | 267, 388, 534 |
| BsiSI | CCGG | 5 cut(s) | 149, 175, 278, 296, 399 |
| BsiWI | CGTACG | 1 cut(s) | 510 |
| BslFI | GGGAC | 3 cut(s) | 105, 703, 1127 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 43, 284, 692, 1150 |
| BsmFI | GGGAC | 3 cut(s) | 105, 703, 1127 |
| BsmI | GAATGC | 1 cut(s) | 823 |
| BsnI | GGCC | 7 cut(s) | 137, 266, 387, 488, 533, 685, 696 |
| Bsp120I | GGGCCC | 1 cut(s) | 135 |
| Bsp1286I | GDGCHC | 3 cut(s) | 139, 181, 302 |
| Bsp143I | GATC | 3 cut(s) | 506, 542, 1240 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1050 |
| Bsp19I | CCATGG | 2 cut(s) | 131, 697 |
| BspANI | GGCC | 7 cut(s) | 137, 266, 387, 488, 533, 685, 696 |
| BspCNI | CTCAG | 3 cut(s) | 603, 970, 1078 |
| BspLI | GGNNCC | 5 cut(s) | 137, 168, 180, 289, 301 |
| BspMI | ACCTGC | 2 cut(s) | 258, 379 |
| BspPI | GGATC | 1 cut(s) | 550 |
| BsrBI | CCGCTC | 2 cut(s) | 172, 293 |
| BsrDI | GCAATG | 1 cut(s) | 1080 |
| BsrFI | RCCGGY | 1 cut(s) | 148 |
| BsrI | ACTGG | 2 cut(s) | 721, 801 |
| BssAI | RCCGGY | 1 cut(s) | 148 |
| BssECI | CCNNGG | 4 cut(s) | 131, 570, 697, 858 |
| BssMI | GATC | 3 cut(s) | 506, 542, 1240 |
| BssSI | CACGAG | 1 cut(s) | 559 |
| BssT1I | CCWWGG | 2 cut(s) | 131, 697 |
| Bst2BI | CACGAG | 1 cut(s) | 559 |
| Bst2UI | CCWGG | 1 cut(s) | 859 |
| Bst4CI | ACNGT | 2 cut(s) | 515, 997 |
| BstC8I | GCNNGC | 2 cut(s) | 604, 968 |
| BstDEI | CTNAG | 6 cut(s) | 5, 611, 949, 957, 1050, 1086 |
| BstDSI | CCRYGG | 2 cut(s) | 131, 697 |
| BstF5I | GGATG | 7 cut(s) | 103, 112, 467, 855, 925, 1014, 1069 |
| BstHHI | GCGC | 1 cut(s) | 416 |
| BstKTI | GATC | 3 cut(s) | 509, 545, 1243 |
| BstMBI | GATC | 3 cut(s) | 506, 542, 1240 |
| BstMCI | CGRYCG | 3 cut(s) | 267, 388, 534 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 149, 158, 408, 411, 420, 591, 612, 1260 |
| BstNI | CCWGG | 1 cut(s) | 859 |
| BstNSI | RCATGY | 1 cut(s) | 1180 |
| BstSCI | CCNGG | 4 cut(s) | 174, 277, 295, 857 |
| BstSFI | CTRYAG | 1 cut(s) | 667 |
| BstSLI | GKGCMC | 1 cut(s) | 139 |
| BstV1I | GCAGC | 3 cut(s) | 62, 486, 1250 |
| BstV2I | GAAGAC | 1 cut(s) | 19 |
| BstX2I | RGATCY | 2 cut(s) | 542, 1240 |
| BstYI | RGATCY | 2 cut(s) | 542, 1240 |
| BstZI | CGGCCG | 3 cut(s) | 264, 385, 531 |
| BsuRI | GGCC | 7 cut(s) | 137, 266, 387, 488, 533, 685, 696 |
| BtgI | CCRYGG | 2 cut(s) | 131, 697 |
| BtsCI | GGATG | 7 cut(s) | 103, 112, 467, 855, 925, 1014, 1069 |
| BtsIMutI | CAGTG | 3 cut(s) | 621, 808, 1002 |
| BveI | ACCTGC | 2 cut(s) | 258, 379 |
| Cac8I | GCNNGC | 2 cut(s) | 604, 968 |
| CciNI | GCGGCCGC | 1 cut(s) | 531 |
| CfoI | GCGC | 1 cut(s) | 416 |
| Cfr10I | RCCGGY | 1 cut(s) | 148 |
| Cfr13I | GGNCC | 3 cut(s) | 135, 136, 683 |
| Csp6I | GTAC | 5 cut(s) | 54, 67, 88, 96, 511 |
| CviAII | CATG | 6 cut(s) | 93, 132, 698, 820, 1150, 1177 |
| CviQI | GTAC | 5 cut(s) | 54, 67, 88, 96, 511 |
| DdeI | CTNAG | 6 cut(s) | 5, 611, 949, 957, 1050, 1086 |
| DpnI | GATC | 3 cut(s) | 508, 544, 1242 |
| DpnII | GATC | 3 cut(s) | 506, 542, 1240 |
| DraIII | CACNNNGTG | 1 cut(s) | 680 |
| EaeI | YGGCCR | 4 cut(s) | 264, 385, 531, 694 |
| EagI | CGGCCG | 3 cut(s) | 264, 385, 531 |
| EciI | GGCGGA | 2 cut(s) | 183, 304 |
| EclXI | CGGCCG | 3 cut(s) | 264, 385, 531 |
| Eco130I | CCWWGG | 2 cut(s) | 131, 697 |
| Eco24I | GRGCYC | 3 cut(s) | 139, 181, 302 |
| Eco52I | CGGCCG | 3 cut(s) | 264, 385, 531 |
| Eco57I | CTGAAG | 2 cut(s) | 783, 1041 |
| EcoRI | GAATTC | 2 cut(s) | 232, 353 |
| EcoRII | CCWGG | 1 cut(s) | 857 |
| EcoT14I | CCWWGG | 2 cut(s) | 131, 697 |
| EcoT22I | ATGCAT | 1 cut(s) | 825 |
| EcoT38I | GRGCYC | 3 cut(s) | 139, 181, 302 |
| ErhI | CCWWGG | 2 cut(s) | 131, 697 |
| FaeI | CATG | 6 cut(s) | 96, 135, 701, 823, 1153, 1180 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 732, 764 |
| FaqI | GGGAC | 3 cut(s) | 105, 703, 1127 |
| FatI | CATG | 6 cut(s) | 92, 131, 697, 819, 1149, 1176 |
| FauI | CCCGC | 2 cut(s) | 166, 841 |
| FblI | GTMKAC | 3 cut(s) | 200, 321, 1210 |
| FokI | GGATG | 7 cut(s) | 90, 99, 454, 862, 932, 1001, 1056 |
| FriOI | GRGCYC | 3 cut(s) | 139, 181, 302 |
| FspBI | CTAG | 3 cut(s) | 735, 837, 1104 |
| GlaI | GCGC | 1 cut(s) | 415 |
| GsuI | CTGGAG | 1 cut(s) | 582 |
| HaeIII | GGCC | 7 cut(s) | 137, 266, 387, 488, 533, 685, 696 |
| HapII | CCGG | 5 cut(s) | 149, 175, 278, 296, 399 |
| HhaI | GCGC | 1 cut(s) | 416 |
| Hin1II | CATG | 6 cut(s) | 96, 135, 701, 823, 1153, 1180 |
| Hin6I | GCGC | 1 cut(s) | 414 |
| HinP1I | GCGC | 1 cut(s) | 414 |
| HincII | GTYRAC | 5 cut(s) | 201, 322, 450, 463, 809 |
| HindII | GTYRAC | 5 cut(s) | 201, 322, 450, 463, 809 |
| HpaII | CCGG | 5 cut(s) | 149, 175, 278, 296, 399 |
| HphI | GGTGA | 6 cut(s) | 52, 147, 180, 301, 430, 935 |
| Hpy166II | GTNNAC | 7 cut(s) | 201, 322, 450, 463, 809, 902, 1211 |
| Hpy188I | TCNGA | 5 cut(s) | 247, 368, 445, 612, 763 |
| Hpy188III | TCNNGA | 4 cut(s) | 31, 44, 1225, 1244 |
| Hpy8I | GTNNAC | 7 cut(s) | 201, 322, 450, 463, 809, 902, 1211 |
| Hpy99I | CGWCG | 4 cut(s) | 202, 265, 323, 386 |
| HpyAV | CCTTC | 6 cut(s) | 110, 267, 388, 463, 779, 1241 |
| HpyCH4III | ACNGT | 2 cut(s) | 515, 997 |
| HpyCH4V | TGCA | 8 cut(s) | 823, 1038, 1064, 1132, 1172, 1195, 1254, 1266 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 149, 158, 408, 411, 420, 591, 612, 1260 |
| HpyF3I | CTNAG | 6 cut(s) | 5, 611, 949, 957, 1050, 1086 |
| Hsp92II | CATG | 6 cut(s) | 96, 135, 701, 823, 1153, 1180 |
| HspAI | GCGC | 1 cut(s) | 414 |
| Kzo9I | GATC | 3 cut(s) | 506, 542, 1240 |
| LmnI | GCTCC | 9 cut(s) | 172, 177, 184, 214, 293, 298, 305, 335, 895 |
| Lsp1109I | GCAGC | 3 cut(s) | 62, 486, 1250 |
| LweI | GCATC | 1 cut(s) | 161 |
| MaeI | CTAG | 3 cut(s) | 735, 837, 1104 |
| MaeIII | GTNAC | 2 cut(s) | 646, 923 |
| MalI | GATC | 3 cut(s) | 508, 544, 1242 |
| MbiI | CCGCTC | 2 cut(s) | 172, 293 |
| MboI | GATC | 3 cut(s) | 506, 542, 1240 |
| MboII | GAAGA | 6 cut(s) | 24, 537, 558, 1034, 1110, 1223 |
| MflI | RGATCY | 2 cut(s) | 542, 1240 |
| MhlI | GDGCHC | 3 cut(s) | 139, 181, 302 |
| MlsI | TGGCCA | 1 cut(s) | 696 |
| MluCI | AATT | 3 cut(s) | 232, 353, 871 |
| MluNI | TGGCCA | 1 cut(s) | 696 |
| MlyI | GAGTC | 6 cut(s) | 74, 196, 317, 419, 455, 848 |
| MmeI | TCCRAC | 5 cut(s) | 270, 391, 495, 917, 1161 |
| Mox20I | TGGCCA | 1 cut(s) | 696 |
| Mph1103I | ATGCAT | 1 cut(s) | 825 |
| MscI | TGGCCA | 1 cut(s) | 696 |
| MseI | TTAA | 2 cut(s) | 933, 1121 |
| Msp20I | TGGCCA | 1 cut(s) | 696 |
| MspA1I | CMGCKG | 2 cut(s) | 499, 602 |
| MspI | CCGG | 5 cut(s) | 149, 175, 278, 296, 399 |
| MspR9I | CCNGG | 4 cut(s) | 176, 279, 297, 859 |
| Mva1269I | GAATGC | 1 cut(s) | 823 |
| MvaI | CCWGG | 1 cut(s) | 859 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 149, 158, 408, 411, 420, 591, 612, 1260 |
| NciI | CCSGG | 3 cut(s) | 176, 279, 297 |
| NcoI | CCATGG | 2 cut(s) | 131, 697 |
| NdeII | GATC | 3 cut(s) | 506, 542, 1240 |
| NlaIII | CATG | 6 cut(s) | 96, 135, 701, 823, 1153, 1180 |
| NlaIV | GGNNCC | 5 cut(s) | 137, 168, 180, 289, 301 |
| NmeAIII | GCCGAG | 3 cut(s) | 249, 370, 551 |
| NmuCI | GTSAC | 1 cut(s) | 923 |
| NotI | GCGGCCGC | 1 cut(s) | 531 |
| NsiI | ATGCAT | 1 cut(s) | 825 |
| NspI | RCATGY | 1 cut(s) | 1180 |
| PciI | ACATGT | 1 cut(s) | 1176 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 519 |
| PctI | GAATGC | 1 cut(s) | 823 |
| PfeI | GAWTC | 4 cut(s) | 743, 953, 1025, 1228 |
| Pfl23II | CGTACG | 1 cut(s) | 510 |
| PflFI | GACNNNGTC | 3 cut(s) | 205, 326, 1139 |
| PleI | GAGTC | 6 cut(s) | 74, 196, 317, 419, 454, 848 |
| PpsI | GAGTC | 6 cut(s) | 74, 196, 317, 419, 454, 848 |
| PscI | ACATGT | 1 cut(s) | 1176 |
| Psp6I | CCWGG | 1 cut(s) | 857 |
| PspGI | CCWGG | 1 cut(s) | 857 |
| PspLI | CGTACG | 1 cut(s) | 510 |
| PspN4I | GGNNCC | 5 cut(s) | 137, 168, 180, 289, 301 |
| PspOMI | GGGCCC | 1 cut(s) | 135 |
| PspPI | GGNCC | 3 cut(s) | 135, 136, 683 |
| PsuI | RGATCY | 2 cut(s) | 542, 1240 |
| PsyI | GACNNNGTC | 3 cut(s) | 205, 326, 1139 |
| PvuII | CAGCTG | 1 cut(s) | 602 |
| RsaI | GTAC | 5 cut(s) | 55, 68, 89, 97, 512 |
| RsaNI | GTAC | 5 cut(s) | 54, 67, 88, 96, 511 |
| SalI | GTCGAC | 2 cut(s) | 199, 320 |
| SaqAI | TTAA | 2 cut(s) | 933, 1121 |
| Sau3AI | GATC | 3 cut(s) | 506, 542, 1240 |
| Sau96I | GGNCC | 3 cut(s) | 135, 136, 683 |
| SchI | GAGTC | 6 cut(s) | 74, 196, 317, 419, 455, 848 |
| ScrFI | CCNGG | 4 cut(s) | 176, 279, 297, 859 |
| SduI | GDGCHC | 3 cut(s) | 139, 181, 302 |
| SfaNI | GCATC | 1 cut(s) | 161 |
| SfcI | CTRYAG | 1 cut(s) | 667 |
| SmlI | CTYRAG | 1 cut(s) | 49 |
| SmoI | CTYRAG | 1 cut(s) | 49 |
| Sse9I | AATT | 3 cut(s) | 232, 353, 871 |
| SspMI | CTAG | 3 cut(s) | 735, 837, 1104 |
| StyD4I | CCNGG | 4 cut(s) | 174, 277, 295, 857 |
| StyI | CCWWGG | 2 cut(s) | 131, 697 |
| TaaI | ACNGT | 2 cut(s) | 515, 997 |
| TaqI | TCGA | 4 cut(s) | 10, 200, 321, 783 |
| TasI | AATT | 3 cut(s) | 232, 353, 871 |
| TatI | WGTACW | 1 cut(s) | 66 |
| TauI | GCSGC | 8 cut(s) | 405, 408, 411, 414, 499, 533, 536, 1263 |
| TfiI | GAWTC | 4 cut(s) | 743, 953, 1025, 1228 |
| Tru1I | TTAA | 2 cut(s) | 933, 1121 |
| Tru9I | TTAA | 2 cut(s) | 933, 1121 |
| TscAI | CASTG | 3 cut(s) | 628, 808, 1002 |
| TseFI | GTSAC | 1 cut(s) | 923 |
| TseI | GCWGC | 3 cut(s) | 75, 499, 1263 |
| Tsp45I | GTSAC | 1 cut(s) | 923 |
| TspDTI | ATGAA | 1 cut(s) | 92 |
| TspGWI | ACGGA | 3 cut(s) | 195, 316, 1034 |
| TspRI | CASTG | 3 cut(s) | 628, 808, 1002 |
| Tth111I | GACNNNGTC | 3 cut(s) | 205, 326, 1139 |
| XapI | RAATTY | 2 cut(s) | 232, 353 |
| XceI | RCATGY | 1 cut(s) | 1180 |
| XmiI | GTMKAC | 3 cut(s) | 200, 321, 1210 |
| XspI | CTAG | 3 cut(s) | 735, 837, 1104 |
| Zsp2I | ATGCAT | 1 cut(s) | 825 |