Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Forward (+)

41528471 .. 41529193

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGGAAGGCTACGAGTCGTTCTTCTCCTGCACCGGGACCTCCGAACGAGGCAGTGCTGGGTATTCCGGTGTGGCTACGTTTTGTCGGGTCAAGTCGGCGTTTATTAGTGATGAGATGGCGGCCGCGATTGGATCTTCTTCTTCTACCTCGTGTTCTTCCTCGGCTCTGGTTCGCCAGAGAAGGTCTCCAGCTGGCTTCCTGAGCCATCTCACTGATAACAATGGAGGATTTTCAGTTACACGGGGAAGTGGAAGCTATAGCTCACAAGGTGGGCCTAATGGTGGCCATGGAGGAACAAGGTTGAAGTCCCAGTTGAGCTTCACTAGGCAAGATTCTCTTTCTCAAATCTCTGAAGTTAGTGAAGATGCTGTCGAAGGTGTTAGCTCTACCAGTGGCCAACATAGTGCCATGCATTCTTATCCCGCTACTAGCTGTGGGATGGACTCCTGGGATAATACCAATTCTATTGTCTTTTCTGCTCCAACAAGTAAACGAGCTAAAAATATGGATGATGACATATTTAACTGCCTCAATACCTTAGAATCTCAGTTTAGCCTGCCCAAGAGAACTTTAGAAATGGCAACAGTGGAGAAGCTACTACACATCCTTGAAGATTCAGTTCCTTGCAAAATCCGTGCTAAGCGTGGCTGTGCAACTTATCCCAGAAGCATTGCTGAGAGGGATCGGATTGTAGGACTTTCACACCCATTCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

240

Amino Acids

25.53

Weight (kDa)

6.99

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	716
AccII	CGCG	1 cut(s)	128
AciI	CCGC	4 cut(s)	5, 122, 126, 426
AclWI	GGATC	2 cut(s)	142, 693
AcoI	YGGCCR	3 cut(s)	123, 286, 397
AcuI	CTGAAG	1 cut(s)	375
AdeI	CACNNNGTG	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	36, 284, 716
AgsI	TTSAA	2 cut(s)	307, 614
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	8 cut(s)	194, 258, 264, 321, 387, 435, 500, 598
AluI	AGCT	8 cut(s)	194, 258, 264, 321, 387, 435, 500, 598
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	142, 693
AoxI	GGCC	4 cut(s)	123, 275, 286, 397
AspS9I	GGNCC	2 cut(s)	39, 275
AsuC2I	CCSGG	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	39
BalI	TGGCCA	2 cut(s)	288, 399
BauI	CACGAG	1 cut(s)	151
BccI	CCATC	3 cut(s)	112, 216, 436
BciT130I	CCWGG	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	2 cut(s)	327, 432
BfmI	CTRYAG	1 cut(s)	259
BisI	GCNGC	2 cut(s)	123, 126
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	2 cut(s)	124, 127
Bme1390I	CCNGG	2 cut(s)	37, 451
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	39, 275
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	37, 451
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	203
Bpu1102I	GCTNAGC	1 cut(s)	642
BpuMI	CCSGG	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	162, 289, 450
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 284, 716
Bse1I	ACTGG	2 cut(s)	313, 393
Bse3DI	GCAATG	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	3 cut(s)	162, 289, 450
BseGI	GGATG	3 cut(s)	447, 517, 606
BseLI	CCNNNNNNNGG	3 cut(s)	36, 284, 716
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	3 cut(s)	194, 563, 669
BseNI	ACTGG	2 cut(s)	313, 393
BseX3I	CGGCCG	1 cut(s)	123
BseYI	CCCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	4 cut(s)	125, 277, 288, 399
BsiEI	CGRYCG	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	36, 69
BslFI	GGGAC	2 cut(s)	52, 295
BslI	CCNNNNNNNGG	3 cut(s)	36, 284, 716
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	2 cut(s)	52, 295
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	4 cut(s)	125, 277, 288, 399
Bso31I	GGTCTC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	134, 685
Bsp1720I	GCTNAGC	1 cut(s)	642
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	4 cut(s)	5, 122, 126, 426
BspANI	GGCC	4 cut(s)	125, 277, 288, 399
BspCNI	CTCAG	3 cut(s)	195, 562, 670
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	2 cut(s)	142, 693
BspTNI	GGTCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	2 cut(s)	313, 393
BssECI	CCNNGG	3 cut(s)	162, 289, 450
BssMI	GATC	2 cut(s)	134, 685
BssSI	CACGAG	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	589
BstC8I	GCNNGC	2 cut(s)	196, 560
BstDEI	CTNAG	5 cut(s)	203, 541, 549, 642, 678
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	3 cut(s)	447, 517, 606
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	2 cut(s)	137, 688
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	2 cut(s)	134, 685
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNI	CCWGG	1 cut(s)	451
BstSCI	CCNGG	2 cut(s)	35, 449
BstSFI	CTRYAG	1 cut(s)	259
BstUI	CGCG	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BstZI	CGGCCG	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	125, 277, 288, 399
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	3 cut(s)	447, 517, 606
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	4 cut(s)	61, 213, 400, 594
Cac8I	GCNNGC	2 cut(s)	196, 560
CciNI	GCGGCCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	39, 275
CviAII	CATG	2 cut(s)	290, 412
DdeI	CTNAG	5 cut(s)	203, 541, 549, 642, 678
DpnI	GATC	2 cut(s)	136, 687
DpnII	GATC	2 cut(s)	134, 685
DraIII	CACNNNGTG	1 cut(s)	272
EaeI	YGGCCR	3 cut(s)	123, 286, 397
EagI	CGGCCG	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	39
Eco52I	CGGCCG	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	2 cut(s)	293, 415
FaiI	YATR	6 cut(s)	261, 291, 405, 413, 509, 521
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	2 cut(s)	52, 295
FatI	CATG	2 cut(s)	289, 411
FauI	CCCGC	1 cut(s)	433
Fnu4HI	GCNGC	2 cut(s)	123, 126
FokI	GGATG	3 cut(s)	454, 524, 593
Fsp4HI	GCNGC	2 cut(s)	123, 126
FspBI	CTAG	2 cut(s)	327, 432
GluI	GCNGC	2 cut(s)	123, 126
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	4 cut(s)	125, 277, 288, 399
HapII	CCGG	2 cut(s)	36, 69
Hin1II	CATG	2 cut(s)	293, 415
HinfI	GANTC	5 cut(s)	17, 335, 446, 545, 617
HpaII	CCGG	2 cut(s)	36, 69
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	3 cut(s)	46, 355, 690
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	494
HpyAV	CCTTC	2 cut(s)	177, 371
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	4 cut(s)	33, 415, 630, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	5 cut(s)	203, 541, 549, 642, 678
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	293, 415
Kzo9I	GATC	2 cut(s)	134, 685
LmnI	GCTCC	1 cut(s)	487
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	327, 432
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	136, 687
MboI	GATC	2 cut(s)	134, 685
MboII	GAAGA	7 cut(s)	16, 129, 132, 135, 150, 377, 626
MflI	RGATCY	1 cut(s)	134
MlsI	TGGCCA	2 cut(s)	288, 399
MluCI	AATT	1 cut(s)	463
MluNI	TGGCCA	2 cut(s)	288, 399
MlyI	GAGTC	2 cut(s)	26, 440
MmeI	TCCRAC	1 cut(s)	509
MnlI	CCTC	8 cut(s)	44, 52, 160, 172, 221, 287, 542, 675
Mox20I	TGGCCA	2 cut(s)	288, 399
Mph1103I	ATGCAT	1 cut(s)	417
MscI	TGGCCA	2 cut(s)	288, 399
MseI	TTAA	1 cut(s)	525
Msp20I	TGGCCA	2 cut(s)	288, 399
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	2 cut(s)	36, 69
MspR9I	CCNGG	2 cut(s)	37, 451
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	451
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	134, 685
NlaIII	CATG	2 cut(s)	293, 415
NlaIV	GGNNCC	1 cut(s)	40
NmeAIII	GCCGAG	1 cut(s)	143
NotI	GCGGCCGC	1 cut(s)	123
NsiI	ATGCAT	1 cut(s)	417
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	335, 545, 617
PflMI	CCANNNNNTGG	1 cut(s)	716
PkrI	GCNGC	2 cut(s)	124, 127
PleI	GAGTC	2 cut(s)	25, 440
PpsI	GAGTC	2 cut(s)	25, 440
PpuMI	RGGWCCY	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	449
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	39, 275
PspPPI	RGGWCCY	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	2 cut(s)	123, 126
Sau3AI	GATC	2 cut(s)	134, 685
Sau96I	GGNCC	2 cut(s)	39, 275
SchI	GAGTC	2 cut(s)	26, 440
ScrFI	CCNGG	2 cut(s)	37, 451
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	39
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	4 cut(s)	5, 122, 126, 426
SspMI	CTAG	2 cut(s)	327, 432
StyD4I	CCNGG	2 cut(s)	35, 449
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	589
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	1 cut(s)	375
TasI	AATT	1 cut(s)	463
TauI	GCSGC	2 cut(s)	125, 128
TfiI	GAWTC	3 cut(s)	335, 545, 617
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	4 cut(s)	61, 220, 400, 594
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	4 cut(s)	61, 220, 400, 594
Van91I	CCANNNNNTGG	1 cut(s)	716
VpaK11BI	GGWCC	1 cut(s)	39
XspI	CTAG	2 cut(s)	327, 432
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.