Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Forward (+)

35526687 .. 35534334

Gene Structure 7648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG161700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTACCCTTCATCCTCATCATCCTCGTCCCAAAAGCCCATGGGCCCAAGCCCAACCGGCATCACCCGCTACGGCTCCGCTCCGGGCTCCCTCCTCACCTCCGCCGTCGACTCCGTCATTGGAGCAGTCGCCGAGCGTGAATTCTCCCCCCTCCGACCTGCTTCCTTCGTCGGCCGATACTTATCCGGCGGCGGCGGCGCAGATGGCGACTCCTCCTCCCTCACCTCCGAGTCAACCTTCAGAGTCAACCCATCCAACGCTAACAAGGAGGCCACGAAGCCGCTGCCCAGATCGTACGGTTTGGGCGAGATGGCGGCCGCGATTGGATCTTCGTCTTCTACCTCGTGTTCTTCCTCGGCTTTGGTTCGCCAGAGAAGCTCTCCAGCTGGCTTTCTGAGCCATCTCACTGACAACAATGGAGGATTTTCAGTTACACGGGGAAGTGGAAGCTATAGCTCACAAGGTGGGCCTAATGGTGGCCATGGAGGAACAAGGTTGAAGTCCCAGTTGAGCTTCACTAGGCAAGATTCTCTTTCTCAAATCTCTGAAGTTAGTGAAAATGCTGTCGAAGGTGTTAGCTCTACCAGTGGCCAACATAGTGCCATGCATTCTTATCCCGCTAGTAGCTTTGGGATGGACTCCTGGGATAATACCAATTCTATTGTCTTTTCTGCTCCAACAAGTAAACGAGCTAAAAATATGGATGGTGACATATTTAACTGCCTCAATACCTTAGAATCTCAGGTAATTTGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

252

Amino Acids

25.87

Weight (kDa)

6.9

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AccBSI	CCGCTC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	320
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	4 cut(s)	172, 315, 478, 589
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	2 cut(s)	223, 567
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	5, 296
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	8 cut(s)	378, 386, 450, 456, 513, 579, 627, 692
AluI	AGCT	8 cut(s)	378, 386, 450, 456, 513, 579, 627, 692
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	7 cut(s)	43, 172, 270, 315, 467, 478, 589
ApaI	GGGCCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	43, 44, 467
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	4 cut(s)	55, 88, 214, 719
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	2 cut(s)	480, 591
BanII	GRGCYC	2 cut(s)	47, 89
BauI	CACGAG	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	6 cut(s)	197, 259, 304, 408, 628, 698
BceAI	ACGGC	2 cut(s)	88, 89
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	2 cut(s)	519, 621
BfmI	CTRYAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	166
BglI	GCCNNNNNGGC	1 cut(s)	57
BisI	GCNGC	7 cut(s)	190, 193, 196, 281, 284, 315, 318
BlsI	GCNGC	7 cut(s)	191, 194, 197, 282, 285, 316, 319
Bme1390I	CCNGG	2 cut(s)	84, 643
BmgT120I	GGNCC	3 cut(s)	43, 44, 467
BmiI	GGNNCC	3 cut(s)	45, 76, 88
BmrFI	CCNGG	2 cut(s)	84, 643
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	1 cut(s)	69
BmuI	ACTGGG	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
BpmI	CTGGAG	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	181
BsaJI	CCNNGG	4 cut(s)	39, 354, 481, 642
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	505, 585
Bse8I	GATNNNNATC	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	643
BseDI	CCNNGG	4 cut(s)	39, 354, 481, 642
BseGI	GGATG	5 cut(s)	11, 20, 251, 639, 709
BseJI	GATNNNNATC	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	2 cut(s)	386, 755
BseNI	ACTGG	2 cut(s)	505, 585
BseRI	GAGGAG	3 cut(s)	83, 202, 205
BseSI	GKGCMC	1 cut(s)	47
BseX3I	CGGCCG	2 cut(s)	172, 315
BseXI	GCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	320
Bsh1285I	CGRYCG	2 cut(s)	175, 318
BshFI	GGCC	7 cut(s)	45, 174, 272, 317, 469, 480, 591
BsiEI	CGRYCG	2 cut(s)	175, 318
BsiSI	CCGG	3 cut(s)	57, 83, 186
BsiWI	CGTACG	1 cut(s)	294
BslFI	GGGAC	2 cut(s)	13, 487
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	13, 487
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	7 cut(s)	45, 174, 272, 317, 469, 480, 591
Bsp120I	GGGCCC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	47, 89
Bsp143I	GATC	2 cut(s)	290, 326
Bsp19I	CCATGG	2 cut(s)	39, 481
BspANI	GGCC	7 cut(s)	45, 174, 272, 317, 469, 480, 591
BspCNI	CTCAG	2 cut(s)	387, 754
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	45, 76, 88
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	505, 585
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	4 cut(s)	39, 354, 481, 642
BssMI	GATC	2 cut(s)	290, 326
BssSI	CACGAG	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	39, 481
Bst2BI	CACGAG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	395, 733, 741
BstDSI	CCRYGG	2 cut(s)	39, 481
BstF5I	GGATG	5 cut(s)	11, 20, 251, 639, 709
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	2 cut(s)	293, 329
BstMBI	GATC	2 cut(s)	290, 326
BstMCI	CGRYCG	2 cut(s)	175, 318
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 66, 195, 204, 375, 396
BstNI	CCWGG	1 cut(s)	643
BstSCI	CCNGG	2 cut(s)	82, 641
BstSFI	CTRYAG	1 cut(s)	451
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BstZI	CGGCCG	2 cut(s)	172, 315
BsuRI	GGCC	7 cut(s)	45, 174, 272, 317, 469, 480, 591
BtgI	CCRYGG	2 cut(s)	39, 481
BtsCI	GGATG	5 cut(s)	11, 20, 251, 639, 709
BtsIMutI	CAGTG	2 cut(s)	405, 592
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	388
CciNI	GCGGCCGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	3 cut(s)	43, 44, 467
Csp6I	GTAC	2 cut(s)	4, 295
CviAII	CATG	3 cut(s)	40, 482, 604
CviQI	GTAC	2 cut(s)	4, 295
DdeI	CTNAG	3 cut(s)	395, 733, 741
DpnI	GATC	2 cut(s)	292, 328
DpnII	GATC	2 cut(s)	290, 326
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	4 cut(s)	172, 315, 478, 589
EagI	CGGCCG	2 cut(s)	172, 315
EciI	GGCGGA	1 cut(s)	91
EclXI	CGGCCG	2 cut(s)	172, 315
Eco130I	CCWWGG	2 cut(s)	39, 481
Eco24I	GRGCYC	2 cut(s)	47, 89
Eco52I	CGGCCG	2 cut(s)	172, 315
Eco57I	CTGAAG	2 cut(s)	223, 567
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	641
EcoT14I	CCWWGG	2 cut(s)	39, 481
EcoT22I	ATGCAT	1 cut(s)	609
EcoT38I	GRGCYC	2 cut(s)	47, 89
ErhI	CCWWGG	2 cut(s)	39, 481
FaeI	CATG	3 cut(s)	43, 485, 607
FaiI	YATR	7 cut(s)	41, 453, 483, 597, 605, 701, 713
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	2 cut(s)	13, 487
FatI	CATG	3 cut(s)	39, 481, 603
FauI	CCCGC	2 cut(s)	74, 625
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	7 cut(s)	190, 193, 196, 281, 284, 315, 318
FokI	GGATG	4 cut(s)	7, 238, 646, 716
FriOI	GRGCYC	2 cut(s)	47, 89
Fsp4HI	GCNGC	7 cut(s)	190, 193, 196, 281, 284, 315, 318
FspBI	CTAG	2 cut(s)	519, 621
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	7 cut(s)	190, 193, 196, 281, 284, 315, 318
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	7 cut(s)	45, 174, 272, 317, 469, 480, 591
HapII	CCGG	3 cut(s)	57, 83, 186
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	43, 485, 607
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	3 cut(s)	109, 234, 247
HindII	GTYRAC	3 cut(s)	109, 234, 247
HinfI	GANTC	7 cut(s)	110, 209, 230, 243, 527, 638, 737
HpaII	CCGG	3 cut(s)	57, 83, 186
HphI	GGTGA	4 cut(s)	55, 88, 214, 719
Hpy166II	GTNNAC	4 cut(s)	109, 234, 247, 686
Hpy188I	TCNGA	5 cut(s)	155, 229, 242, 396, 547
Hpy8I	GTNNAC	4 cut(s)	109, 234, 247, 686
Hpy99I	CGWCG	2 cut(s)	110, 173
HpyAV	CCTTC	4 cut(s)	18, 175, 247, 563
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	2 cut(s)	607, 753
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 66, 195, 204, 375, 396
HpyF3I	CTNAG	3 cut(s)	395, 733, 741
Hsp92II	CATG	3 cut(s)	43, 485, 607
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	290, 326
LmnI	GCTCC	5 cut(s)	80, 85, 92, 122, 679
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	519, 621
MaeIII	GTNAC	2 cut(s)	430, 707
MalI	GATC	2 cut(s)	292, 328
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	2 cut(s)	290, 326
MboII	GAAGA	3 cut(s)	321, 327, 342
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	47, 89
MlsI	TGGCCA	2 cut(s)	480, 591
MluCI	AATT	3 cut(s)	140, 655, 747
MluNI	TGGCCA	2 cut(s)	480, 591
MlyI	GAGTC	5 cut(s)	104, 203, 239, 252, 632
MmeI	TCCRAC	3 cut(s)	178, 279, 701
Mox20I	TGGCCA	2 cut(s)	480, 591
Mph1103I	ATGCAT	1 cut(s)	609
MscI	TGGCCA	2 cut(s)	480, 591
MseI	TTAA	2 cut(s)	717, 757
Msp20I	TGGCCA	2 cut(s)	480, 591
MspA1I	CMGCKG	2 cut(s)	283, 386
MspI	CCGG	3 cut(s)	57, 83, 186
MspR9I	CCNGG	2 cut(s)	84, 643
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	1 cut(s)	643
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	6 cut(s)	57, 66, 195, 204, 375, 396
NciI	CCSGG	1 cut(s)	84
NcoI	CCATGG	2 cut(s)	39, 481
NdeII	GATC	2 cut(s)	290, 326
NlaIII	CATG	3 cut(s)	43, 485, 607
NlaIV	GGNNCC	3 cut(s)	45, 76, 88
NmeAIII	GCCGAG	2 cut(s)	157, 335
NmuCI	GTSAC	1 cut(s)	707
NotI	GCGGCCGC	1 cut(s)	315
NsiI	ATGCAT	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	527, 737
Pfl23II	CGTACG	1 cut(s)	294
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	7 cut(s)	191, 194, 197, 282, 285, 316, 319
PleI	GAGTC	5 cut(s)	104, 203, 238, 251, 632
PpsI	GAGTC	5 cut(s)	104, 203, 238, 251, 632
Psp6I	CCWGG	1 cut(s)	641
PspGI	CCWGG	1 cut(s)	641
PspLI	CGTACG	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	45, 76, 88
PspOMI	GGGCCC	1 cut(s)	43
PspPI	GGNCC	3 cut(s)	43, 44, 467
PsuI	RGATCY	1 cut(s)	326
PsyI	GACNNNGTC	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	2 cut(s)	5, 296
RsaNI	GTAC	2 cut(s)	4, 295
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	717, 757
SatI	GCNGC	7 cut(s)	190, 193, 196, 281, 284, 315, 318
Sau3AI	GATC	2 cut(s)	290, 326
Sau96I	GGNCC	3 cut(s)	43, 44, 467
SchI	GAGTC	5 cut(s)	104, 203, 239, 252, 632
ScrFI	CCNGG	2 cut(s)	84, 643
SduI	GDGCHC	2 cut(s)	47, 89
SfaNI	GCATC	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	451
Sse9I	AATT	3 cut(s)	140, 655, 747
SspMI	CTAG	2 cut(s)	519, 621
StyD4I	CCNGG	2 cut(s)	82, 641
StyI	CCWWGG	2 cut(s)	39, 481
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	108, 567
TasI	AATT	3 cut(s)	140, 655, 747
TauI	GCSGC	6 cut(s)	192, 195, 198, 283, 317, 320
TfiI	GAWTC	2 cut(s)	527, 737
Tru1I	TTAA	2 cut(s)	717, 757
Tru9I	TTAA	2 cut(s)	717, 757
TscAI	CASTG	2 cut(s)	412, 592
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	707
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	412, 592
Tth111I	GACNNNGTC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	519, 621
Zsp2I	ATGCAT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.