Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Forward (+)

10918057 .. 10918854

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1062100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGAGCCGCCGCCGACCACGAATTCTCATCCCTCCGACCGCAGCACCTACGAGGCCACTACTTCTCCGGAGACGGTGGCGGTGACTCTCCCTCCCTCACTAGCTCCGAGTCCAGCTTCAAAGTCAACTCATCCAACGGCAGCCATAGGGACACCAGCACCACCAAGCCATTGCTCCAATCGCATGGTCTGAATGAGATTGGATCTTCCAACTTTTCTTCTTGTTCTTCGACGTCGTCGGCGGCTCTGGTTCGCCAACGAAGCTCTCTAGCTAGCTTCTTCAGCCATCTCACCGCCTCTGAGAATAATGGAGGATTCTCAGTTACAAGAGGAACTGGAAGCTATAGATCACAAGGGGGCAATAATGGTGGTCACGGAGTAACAAGATTAAAGTCGCAGTTGAGCTTAATTGGGCAAGATTCTCTTTCTCAAATCTCTGAGGTAAGTGAAAATGCTGGTAAAGGTGTTAGCACTGACAACGGCCACCATAGTGCCATGCATTCTTATCCCGCCACTAGCCTTGGGATGGAATCCTGGGATAATACAAATTCGGTTGTCTTTTCAGCTCCACCAAGTAAGCGAGCTAAAAATATGGATGGGGACATATTTAACTTCCTCAATGCTTTAGAATCTCAGTTTAGCCTTCCCCACACATCTTTAGAAATGGCAACAGTAGATAAGCTACTGCACATCCTTGAAGATTTTGTTCCTTGCAAAATCCGTGCTAAGCGTGGCTGTGCAACTCATCCCAGAAGCATTGCAGAGAGGGCAAGTGATCTGGGTTGTTTCGACGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

266

Amino Acids

28.05

Weight (kDa)

6.66

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	7 cut(s)	9, 12, 41, 81, 242, 294, 510
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	2 cut(s)	23, 547
AcuI	CTGAAG	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	2 cut(s)	121, 698
AjnI	CCWGG	1 cut(s)	533
AleI	CACNNNNGTG	1 cut(s)	489
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	211
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	2 cut(s)	55, 481
ApeKI	GCWGC	2 cut(s)	43, 141
ApoI	RAATTY	2 cut(s)	23, 547
AsuHPI	GGTGA	2 cut(s)	95, 283
AsuNHI	GCTAGC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	55, 153
BccI	CCATC	3 cut(s)	294, 520, 590
BceAI	ACGGC	2 cut(s)	154, 496
BciT130I	CCWGG	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	4 cut(s)	102, 269, 273, 516
BfmI	CTRYAG	1 cut(s)	343
BisI	GCNGC	5 cut(s)	9, 12, 44, 142, 243
BlpI	GCTNAGC	1 cut(s)	726
BlsI	GCNGC	5 cut(s)	10, 13, 45, 143, 244
Bme1390I	CCNGG	1 cut(s)	535
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	535
BmtI	GCTAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	726
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	520, 534
BsaWI	WCCGGW	1 cut(s)	68
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 77, 80, 107
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	2 cut(s)	170, 756
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	2 cut(s)	520, 534
BseGI	GGATG	6 cut(s)	29, 131, 531, 601, 690, 745
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMI	GCAATG	2 cut(s)	170, 756
BseMII	CTCAG	4 cut(s)	291, 333, 429, 647
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	55, 153
BsgI	GTGCAG	1 cut(s)	671
Bsh1285I	CGRYCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	57, 483
BsiEI	CGRYCG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	2 cut(s)	164, 614
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	164, 614
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	57, 483
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	203, 347, 775
Bsp1720I	GCTNAGC	1 cut(s)	726
BspACI	CCGC	7 cut(s)	9, 12, 41, 81, 242, 294, 510
BspANI	GGCC	2 cut(s)	57, 483
BspCNI	CTCAG	4 cut(s)	292, 332, 430, 646
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	7
BspOI	GCTAGC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	211
BsrDI	GCAATG	2 cut(s)	170, 756
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	520, 534
BssMI	GATC	3 cut(s)	203, 347, 775
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	3 cut(s)	77, 673, 794
BstACI	GRCGYC	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	274, 582
BstDEI	CTNAG	5 cut(s)	300, 319, 438, 633, 726
BstF5I	GGATG	6 cut(s)	29, 131, 531, 601, 690, 745
BstKTI	GATC	3 cut(s)	206, 350, 778
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	3 cut(s)	203, 347, 775
BstMCI	CGRYCG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	4 cut(s)	181, 261, 282, 767
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	2 cut(s)	55, 153
BstX2I	RGATCY	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	57, 483
BtsCI	GGATG	6 cut(s)	29, 131, 531, 601, 690, 745
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	274, 582
CspCI	CAANNNNNGTGG	4 cut(s)	349, 384, 502, 537
CviAII	CATG	2 cut(s)	185, 496
DdeI	CTNAG	5 cut(s)	300, 319, 438, 633, 726
DpnI	GATC	3 cut(s)	205, 349, 777
DpnII	GATC	3 cut(s)	203, 347, 775
EaeI	YGGCCR	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	2 cut(s)	188, 499
FaiI	YATR	7 cut(s)	147, 186, 345, 489, 497, 593, 605
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	2 cut(s)	164, 614
FatI	CATG	2 cut(s)	184, 495
FauI	CCCGC	1 cut(s)	517
Fnu4HI	GCNGC	5 cut(s)	9, 12, 44, 142, 243
FokI	GGATG	6 cut(s)	16, 118, 538, 608, 677, 732
Fsp4HI	GCNGC	5 cut(s)	9, 12, 44, 142, 243
FspBI	CTAG	4 cut(s)	102, 269, 273, 516
GluI	GCNGC	5 cut(s)	9, 12, 44, 142, 243
HaeIII	GGCC	2 cut(s)	57, 483
HapII	CCGG	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	188, 499
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	6 cut(s)	86, 110, 315, 419, 530, 629
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	2 cut(s)	95, 283
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	5 cut(s)	38, 109, 192, 301, 439
Hpy188III	TCNNGA	1 cut(s)	69
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	4 cut(s)	235, 238, 241, 794
HpyAV	CCTTC	1 cut(s)	653
HpyCH4III	ACNGT	3 cut(s)	77, 673, 794
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	5 cut(s)	499, 688, 714, 740, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	181, 261, 282, 767
HpyF3I	CTNAG	5 cut(s)	300, 319, 438, 633, 726
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	188, 499
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	203, 347, 775
LmnI	GCTCC	4 cut(s)	5, 110, 180, 571
Lsp1109I	GCAGC	2 cut(s)	55, 153
MaeI	CTAG	4 cut(s)	102, 269, 273, 516
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	4 cut(s)	83, 322, 371, 379
MalI	GATC	3 cut(s)	205, 349, 777
MboI	GATC	3 cut(s)	203, 347, 775
MboII	GAAGA	5 cut(s)	198, 210, 219, 271, 710
MflI	RGATCY	1 cut(s)	203
MluCI	AATT	3 cut(s)	23, 408, 547
MlyI	GAGTC	2 cut(s)	80, 119
MmeI	TCCRAC	3 cut(s)	61, 159, 234
Mph1103I	ATGCAT	1 cut(s)	501
MroI	TCCGGA	1 cut(s)	68
MseI	TTAA	4 cut(s)	389, 407, 609, 796
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	535
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	4 cut(s)	181, 261, 282, 767
NdeII	GATC	3 cut(s)	203, 347, 775
NheI	GCTAGC	1 cut(s)	272
NlaIII	CATG	2 cut(s)	188, 499
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	2 cut(s)	83, 371
NsiI	ATGCAT	1 cut(s)	501
OliI	CACNNNNGTG	1 cut(s)	489
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	4 cut(s)	315, 419, 530, 629
PflFI	GACNNNGTC	1 cut(s)	235
PkrI	GCNGC	5 cut(s)	10, 13, 45, 143, 244
PleI	GAGTC	2 cut(s)	80, 118
PpsI	GAGTC	2 cut(s)	80, 118
Psp6I	CCWGG	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	4 cut(s)	389, 407, 609, 796
SatI	GCNGC	5 cut(s)	9, 12, 44, 142, 243
Sau3AI	GATC	3 cut(s)	203, 347, 775
SchI	GAGTC	2 cut(s)	80, 119
ScrFI	CCNGG	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	343
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	3 cut(s)	23, 408, 547
SsiI	CCGC	7 cut(s)	9, 12, 41, 81, 242, 294, 510
SspMI	CTAG	4 cut(s)	102, 269, 273, 516
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	3 cut(s)	77, 673, 794
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	230, 789
TasI	AATT	3 cut(s)	23, 408, 547
TauI	GCSGC	3 cut(s)	11, 14, 245
TfiI	GAWTC	4 cut(s)	315, 419, 530, 629
Tru1I	TTAA	4 cut(s)	389, 407, 609, 796
Tru9I	TTAA	4 cut(s)	389, 407, 609, 796
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	2 cut(s)	83, 371
TseI	GCWGC	2 cut(s)	43, 141
Tsp45I	GTSAC	2 cut(s)	83, 371
TspGWI	ACGGA	2 cut(s)	390, 710
TspRI	CASTG	1 cut(s)	478
Tth111I	GACNNNGTC	1 cut(s)	235
XapI	RAATTY	2 cut(s)	23, 547
XspI	CTAG	4 cut(s)	102, 269, 273, 516
ZraI	GACGTC	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.