Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Reverse (-)

13815908 .. 13818023

Gene Structure 2116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0089200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAACTTAAAAACAAGATTCTTCTTCGAAACATTTTTTTGGAAGACTACTGAAAATATAAATATCTTAATTAAGTCCACCCATCGTCATTCGCTTTGGGAGAAACATCAAACTATTCAACTTGGACATAATGATGCTATATTTGAATTGAAAACCATTGTCAATTGTAAAGGGTATGTGCTTGGGAACCCAGCAACTGATTCTGTCATTGATATGAATGCAAGAGTTACTTATGCTCACAGGATGTCTCTTGTGTCGGATAAACTGTATAAGGCTGCTAAAACAAGTTGCAATGGAGATTATGTAAATGTAGATTCAAGCAATGATGCATGCATAGCAGATATTGATGCCATTTCTGAGCTCACCAATGACATAAATTTGGTACACATCTTGGAACCATATTGTAGTAATGCATTGCCTACAGCAAAGGAGATGTGTCAAGCTCGTAGATACCTCAAAGACTTGTCCAAAGGTTTACTAAGTTCACCACCTAACGGTCCTGCACTTTGGTGTCGAAGTTATAATCACATGCTCGCCTCAGTTTGGGCAAACAACAAAGGTGTCCAAGATGCTCTTGGTGTCCGAAGGGGCACCAAACAGTTTTGGCAGTACTGTAATACCACATTGGCTTACACTAAAGTTGCCACAAGTGTAGTGAGTTATCATCAAATTCTCTCAAAGAGGGCTGACCTTCGTGCTCTGATATACAGTGGTGACCATGACATGGCAATTCCTCATATTGGTACACAAGAATGGATAAAGACTCTGAATTTGACTGTGGACGAGTCCTGGAGGACATGGTCAATTGATGGCCAAACTGCAGGATACACAAAGAAGTTAATCAATGAGGTTTTCAGTTTGACGTTCGTCACTATAAAGGCCACTTTGCGGCAGAGTATAAAGTCAAGGAATGTGCTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

307

Amino Acids

34.79

Weight (kDa)

9.05

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	51 - 293	1.6e-40	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
AccB1I	GGYRCC	1 cut(s)	590
AccB7I	CCANNNNNTGG	1 cut(s)	724
AciI	CCGC	1 cut(s)	889
AcoI	YGGCCR	1 cut(s)	811
AcsI	RAATTY	3 cut(s)	376, 669, 769
AfaI	GTAC	3 cut(s)	384, 611, 745
AfiI	CCNNNNNNNGG	5 cut(s)	494, 543, 724, 740, 888
AgsI	TTSAA	4 cut(s)	119, 146, 151, 318
AjnI	CCWGG	1 cut(s)	788
AleI	CACNNNNGTG	1 cut(s)	508
AluBI	AGCT	2 cut(s)	361, 443
AluI	AGCT	2 cut(s)	361, 443
Alw21I	GWGCWC	2 cut(s)	363, 700
Alw26I	GTCTC	1 cut(s)	252
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	811, 879
ApeKI	GCWGC	2 cut(s)	275, 916
ApoI	RAATTY	3 cut(s)	376, 669, 769
ArsI	GACNNNNNNTTYG	2 cut(s)	754, 786
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	3 cut(s)	355, 477, 725
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	593
BalI	TGGCCA	1 cut(s)	813
BanI	GGYRCC	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	2 cut(s)	363, 700
BbvI	GCAGC	2 cut(s)	262, 903
BccI	CCATC	2 cut(s)	90, 803
BciT130I	CCWGG	1 cut(s)	790
BciVI	GTATCC	1 cut(s)	818
BcoDI	GTCTC	1 cut(s)	252
BfmI	CTRYAG	2 cut(s)	420, 819
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	3 cut(s)	276, 890, 917
BlsI	GCNGC	3 cut(s)	277, 891, 918
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	1 cut(s)	790
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	3 cut(s)	188, 396, 592
BmrFI	CCNGG	1 cut(s)	790
BmsI	GCATC	4 cut(s)	124, 316, 337, 559
BoxI	GACNNNNGTC	1 cut(s)	866
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	811
Bpu14I	TTCGAA	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	5 cut(s)	494, 543, 724, 740, 888
Bse3DI	GCAATG	3 cut(s)	298, 328, 413
BseBI	CCWGG	1 cut(s)	790
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	5 cut(s)	494, 543, 724, 740, 888
BseMI	GCAATG	3 cut(s)	298, 328, 413
BseMII	CTCAG	2 cut(s)	348, 552
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	2 cut(s)	262, 903
BseYI	CCCAGC	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	2 cut(s)	813, 881
BshNI	GGYRCC	1 cut(s)	590
BsiHKAI	GWGCWC	2 cut(s)	363, 700
BslI	CCNNNNNNNGG	5 cut(s)	494, 543, 724, 740, 888
BsmAI	GTCTC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	813, 881
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	3 cut(s)	363, 593, 700
BspACI	CCGC	1 cut(s)	889
BspANI	GGCC	2 cut(s)	813, 881
BspCNI	CTCAG	2 cut(s)	349, 551
BspLI	GGNNCC	3 cut(s)	188, 396, 592
BspMAI	CTGCAG	1 cut(s)	823
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	590
BsrDI	GCAATG	3 cut(s)	298, 328, 413
Bst2UI	CCWGG	1 cut(s)	790
Bst4CI	ACNGT	6 cut(s)	267, 497, 600, 614, 710, 778
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	331, 534
BstDEI	CTNAG	3 cut(s)	357, 479, 538
BstEII	GGTNACC	1 cut(s)	713
BstF5I	GGATG	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	790
BstNSI	RCATGY	2 cut(s)	333, 532
BstPAI	GACNNNNGTC	1 cut(s)	866
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	788
BstSFI	CTRYAG	2 cut(s)	420, 819
BstSLI	GKGCMC	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	262, 903
BstV2I	GAAGAC	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	2 cut(s)	813, 881
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	715
Cac8I	GCNNGC	2 cut(s)	331, 534
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	3 cut(s)	383, 610, 744
CviAII	CATG	6 cut(s)	330, 529, 719, 724, 798, 921
CviJI	RGCY	7 cut(s)	275, 361, 443, 629, 686, 813, 881
CviKI_1	RGCY	7 cut(s)	275, 361, 443, 629, 686, 813, 881
CviQI	GTAC	3 cut(s)	383, 610, 744
DdeI	CTNAG	3 cut(s)	357, 479, 538
EaeI	YGGCCR	1 cut(s)	811
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	361
Eco91I	GGTNACC	1 cut(s)	713
EcoICRI	GAGCTC	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	788
EcoT22I	ATGCAT	3 cut(s)	331, 335, 415
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	6 cut(s)	333, 532, 722, 727, 801, 924
FalI	AAGNNNNNCTT	4 cut(s)	214, 246, 558, 590
FatI	CATG	6 cut(s)	329, 528, 718, 723, 797, 920
Fnu4HI	GCNGC	3 cut(s)	276, 890, 917
FokI	GGATG	1 cut(s)	256
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	3 cut(s)	276, 890, 917
GluI	GCNGC	3 cut(s)	276, 890, 917
GsaI	CCCAGC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	811
HaeIII	GGCC	2 cut(s)	813, 881
Hin1II	CATG	6 cut(s)	333, 532, 722, 727, 801, 924
HinfI	GANTC	5 cut(s)	18, 200, 314, 763, 785
HphI	GGTGA	3 cut(s)	355, 477, 725
Hpy166II	GTNNAC	6 cut(s)	78, 385, 476, 485, 746, 781
Hpy188I	TCNGA	5 cut(s)	259, 358, 584, 702, 768
Hpy8I	GTNNAC	6 cut(s)	78, 385, 476, 485, 746, 781
HpyAV	CCTTC	2 cut(s)	579, 701
HpyCH4III	ACNGT	6 cut(s)	267, 497, 600, 614, 710, 778
HpyCH4IV	ACGT	1 cut(s)	863
HpyCH4V	TGCA	7 cut(s)	221, 291, 329, 333, 413, 503, 821
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	357, 479, 538
HpySE526I	ACGT	1 cut(s)	863
Hsp92II	CATG	6 cut(s)	333, 532, 722, 727, 801, 924
LpnPI	CCDG	6 cut(s)	204, 226, 513, 775, 802, 807
Lsp1109I	GCAGC	2 cut(s)	262, 903
LweI	GCATC	4 cut(s)	124, 316, 337, 559
MaeII	ACGT	1 cut(s)	863
MaeIII	GTNAC	3 cut(s)	226, 713, 868
MboII	GAAGA	3 cut(s)	13, 16, 55
MfeI	CAATTG	2 cut(s)	163, 804
MhlI	GDGCHC	3 cut(s)	363, 593, 700
MlsI	TGGCCA	1 cut(s)	813
MluCI	AATT	8 cut(s)	69, 146, 163, 376, 669, 729, 769, 804
MluNI	TGGCCA	1 cut(s)	813
MlyI	GAGTC	2 cut(s)	757, 794
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	6 cut(s)	464, 547, 675, 744, 786, 841
Mox20I	TGGCCA	1 cut(s)	813
Mph1103I	ATGCAT	3 cut(s)	331, 335, 415
MscI	TGGCCA	1 cut(s)	813
MseI	TTAA	4 cut(s)	8, 68, 72, 839
MslI	CAYNNNNRTG	4 cut(s)	132, 212, 508, 751
Msp20I	TGGCCA	1 cut(s)	813
MspR9I	CCNGG	1 cut(s)	790
MunI	CAATTG	2 cut(s)	163, 804
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	790
MwoI	GCNNNNNNNGC	1 cut(s)	335
NlaIII	CATG	6 cut(s)	333, 532, 722, 727, 801, 924
NlaIV	GGNNCC	3 cut(s)	188, 396, 592
NmuCI	GTSAC	2 cut(s)	713, 868
NsiI	ATGCAT	3 cut(s)	331, 335, 415
NspI	RCATGY	2 cut(s)	333, 532
NspV	TTCGAA	1 cut(s)	27
OliI	CACNNNNGTG	1 cut(s)	508
PacI	TTAATTAA	1 cut(s)	72
PaeI	GCATGC	1 cut(s)	333
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	3 cut(s)	18, 200, 314
PflFI	GACNNNGTC	1 cut(s)	799
PflMI	CCANNNNNTGG	1 cut(s)	724
PfoI	TCCNGGA	1 cut(s)	788
PkrI	GCNGC	3 cut(s)	277, 891, 918
PleI	GAGTC	2 cut(s)	757, 793
PpsI	GAGTC	2 cut(s)	757, 793
PshAI	GACNNNNGTC	1 cut(s)	866
PsiI	TTATAA	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	788
PspEI	GGTNACC	1 cut(s)	713
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	788
PspN4I	GGNNCC	3 cut(s)	188, 396, 592
PspPI	GGNCC	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	823
PstNI	CAGNNNCTG	1 cut(s)	197
PsyI	GACNNNGTC	1 cut(s)	799
RsaI	GTAC	3 cut(s)	384, 611, 745
RsaNI	GTAC	3 cut(s)	383, 610, 744
RseI	CAYNNNNRTG	4 cut(s)	132, 212, 508, 751
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	4 cut(s)	8, 68, 72, 839
SatI	GCNGC	3 cut(s)	276, 890, 917
Sau96I	GGNCC	1 cut(s)	497
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	2 cut(s)	757, 794
ScrFI	CCNGG	1 cut(s)	790
SduI	GDGCHC	3 cut(s)	363, 593, 700
SetI	ASST	9 cut(s)	363, 445, 456, 475, 493, 562, 693, 852, 866
SfaNI	GCATC	4 cut(s)	124, 316, 337, 559
SfcI	CTRYAG	2 cut(s)	420, 819
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	4 cut(s)	132, 212, 508, 751
SphI	GCATGC	1 cut(s)	333
Sse9I	AATT	8 cut(s)	69, 146, 163, 376, 669, 729, 769, 804
SsiI	CCGC	1 cut(s)	889
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	788
TaaI	ACNGT	6 cut(s)	267, 497, 600, 614, 710, 778
TaiI	ACGT	1 cut(s)	866
TaqI	TCGA	2 cut(s)	27, 514
TasI	AATT	8 cut(s)	69, 146, 163, 376, 669, 729, 769, 804
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	892
TfiI	GAWTC	3 cut(s)	18, 200, 314
Tru1I	TTAA	4 cut(s)	8, 68, 72, 839
Tru9I	TTAA	4 cut(s)	8, 68, 72, 839
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	2 cut(s)	713, 868
TseI	GCWGC	2 cut(s)	275, 916
Tsp45I	GTSAC	2 cut(s)	713, 868
TspDTI	ATGAA	2 cut(s)	17, 230
TspRI	CASTG	1 cut(s)	715
Tth111I	GACNNNGTC	1 cut(s)	799
Van91I	CCANNNNNTGG	1 cut(s)	724
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	3 cut(s)	376, 669, 769
XceI	RCATGY	2 cut(s)	333, 532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
ZrmI	AGTACT	1 cut(s)	611
Zsp2I	ATGCAT	3 cut(s)	331, 335, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.