Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Forward (+)

13826405 .. 13830021

Gene Structure 3617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0089400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCAGGGACTGTGGACCAAGGTCCACCTGCACTGAGCCGAAAATCGGCGCCTGACCGACACGCTCGGTTACTTAACCGCAGCCGCTCCCGGAATCCTAAATTAGAAGGTGTTGTTTCGAATAAGTCACTCGATTGGCGGCGGCGGCGTATTGGGTTTGGTTGCGAGTTCCTGCTGCGAGTAGCTTTGGGATCTGCAGGAGATCTAATGTTGTCATCTCGTATCCGGAATACCAGCTCTGATGGGAAGCCATTTAAATTCACGTTTGCGTATTACACTTATTATTCTGTTTCAGATATCAGTGAAGTTCATGTAGAAGGCTTGGAGACCCTCGATTATCTGGACAACATGCAGAACAGGAAAAGTAGTACTGAGCAAGGAGATGCTATAACATTTGAATCGGAGGTGGACAAGATATATCTTAGAACTCCTACAAAGATTGCAATTCTGGATCATGAGAAGCGAGAAGAGCAAAGAGTCTTTTGTGTGACTAGAGTTGTTGGAGGGGGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

171

Amino Acids

19.34

Weight (kDa)

9.44

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	56 - 156	9.7e-14	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc36I	ACCTGC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	49
AccBSI	CCGCTC	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	225
AciI	CCGC	5 cut(s)	79, 85, 139, 142, 145
AclWI	GGATC	2 cut(s)	199, 459
AcsI	RAATTY	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	398
AluBI	AGCT	2 cut(s)	185, 237
AluI	AGCT	2 cut(s)	185, 237
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	2 cut(s)	199, 459
AlwNI	CAGNNNCTG	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	81, 175
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	2 cut(s)	16, 23
AsuC2I	CCSGG	1 cut(s)	91
AsuII	TTCGAA	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	16, 23
BanI	GGYRCC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	93, 162
BccI	CCATC	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	233
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	6 cut(s)	82, 85, 140, 143, 146, 176
BlsI	GCNGC	6 cut(s)	83, 86, 141, 144, 147, 177
BmcAI	AGTACT	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	2 cut(s)	16, 23
BmgT120I	GGNCC	2 cut(s)	16, 23
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	373
BoxI	GACNNNNGTC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	19
BsaWI	WCCGGW	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
BseAI	TCCGGA	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	2 cut(s)	26, 363
BseXI	GCAGC	2 cut(s)	93, 162
BsgI	GTGCAG	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	91, 226
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	22
Bso31I	GGTCTC	1 cut(s)	320
Bsp119I	TTCGAA	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	191, 202, 451
BspACI	CCGC	5 cut(s)	79, 85, 139, 142, 145
BspCNI	CTCAG	2 cut(s)	27, 364
BspEI	TCCGGA	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	2 cut(s)	199, 459
BspQI	GCTCTTC	1 cut(s)	462
BspT104I	TTCGAA	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	3 cut(s)	191, 202, 451
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	35, 372, 422
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	3 cut(s)	194, 205, 454
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	3 cut(s)	191, 202, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 469
BstNSI	RCATGY	1 cut(s)	352
BstPAI	GACNNNNGTC	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	93, 162
BstX2I	RGATCY	2 cut(s)	191, 202
BstYI	RGATCY	2 cut(s)	191, 202
BsuI	GTATCC	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	32, 307
BveI	ACCTGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	16, 23
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	3 cut(s)	311, 349, 455
CviJI	RGCY	6 cut(s)	39, 84, 185, 237, 250, 321
CviKI_1	RGCY	6 cut(s)	39, 84, 185, 237, 250, 321
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	3 cut(s)	35, 372, 422
DinI	GGCGCC	1 cut(s)	51
DpnI	GATC	3 cut(s)	193, 204, 453
DpnII	GATC	3 cut(s)	191, 202, 451
DraI	TTTAAA	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	16, 23
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	19
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	3 cut(s)	314, 352, 458
FaiI	YATR	5 cut(s)	312, 350, 389, 418, 456
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	310, 348, 454
Fnu4HI	GCNGC	6 cut(s)	82, 85, 140, 143, 146, 176
Fsp4HI	GCNGC	6 cut(s)	82, 85, 140, 143, 146, 176
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	6 cut(s)	82, 85, 140, 143, 146, 176
HaeII	RGCGCY	1 cut(s)	53
HapII	CCGG	2 cut(s)	91, 226
HhaI	GCGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	3 cut(s)	314, 352, 458
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	3 cut(s)	94, 398, 477
HpaII	CCGG	2 cut(s)	91, 226
Hpy166II	GTNNAC	3 cut(s)	16, 26, 409
Hpy188I	TCNGA	3 cut(s)	241, 295, 403
Hpy188III	TCNNGA	4 cut(s)	226, 341, 449, 455
Hpy8I	GTNNAC	3 cut(s)	16, 26, 409
HpyAV	CCTTC	2 cut(s)	101, 311
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	32, 197, 352, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 469
HpyF3I	CTNAG	3 cut(s)	35, 372, 422
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	314, 352, 458
HspAI	GCGC	1 cut(s)	50
KasI	GGCGCC	1 cut(s)	49
Kpn2I	TCCGGA	1 cut(s)	225
Kzo9I	GATC	3 cut(s)	191, 202, 451
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	2 cut(s)	93, 162
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	3 cut(s)	69, 126, 487
MalI	GATC	3 cut(s)	193, 204, 453
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	3 cut(s)	191, 202, 451
MboII	GAAGA	1 cut(s)	479
MflI	RGATCY	2 cut(s)	191, 202
MluCI	AATT	3 cut(s)	101, 257, 444
Mly113I	GGCGCC	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	486
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	3 cut(s)	341, 397, 497
MroI	TCCGGA	1 cut(s)	225
MseI	TTAA	2 cut(s)	75, 255
MspI	CCGG	2 cut(s)	91, 226
MspR9I	CCNGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	2 cut(s)	145, 469
NarI	GGCGCC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	3 cut(s)	191, 202, 451
NlaIII	CATG	3 cut(s)	314, 352, 458
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	126, 487
NspI	RCATGY	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	119
PagI	TCATGA	1 cut(s)	454
PaqCI	CACCTGC	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	94, 398
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	6 cut(s)	83, 86, 141, 144, 147, 177
PleI	GAGTC	1 cut(s)	485
PluTI	GGCGCC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	485
PshAI	GACNNNNGTC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	16, 23
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	2 cut(s)	191, 202
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	75, 255
SatI	GCNGC	6 cut(s)	82, 85, 140, 143, 146, 176
Sau3AI	GATC	3 cut(s)	191, 202, 451
Sau96I	GGNCC	2 cut(s)	16, 23
ScaI	AGTACT	1 cut(s)	370
SchI	GAGTC	1 cut(s)	486
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	7 cut(s)	25, 31, 112, 187, 239, 266, 408
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	195
SfoI	GGCGCC	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	119
SinI	GGWCC	2 cut(s)	16, 23
SmiI	ATTTAAAT	1 cut(s)	256
Sse9I	AATT	3 cut(s)	101, 257, 444
SsiI	CCGC	5 cut(s)	79, 85, 139, 142, 145
SspDI	GGCGCC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	19
SwaI	ATTTAAAT	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	3 cut(s)	119, 132, 333
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	101, 257, 444
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	4 cut(s)	87, 142, 145, 148
TfiI	GAWTC	2 cut(s)	94, 398
Tru1I	TTAA	2 cut(s)	75, 255
Tru9I	TTAA	2 cut(s)	75, 255
TscAI	CASTG	2 cut(s)	39, 307
TseFI	GTSAC	2 cut(s)	126, 487
TseI	GCWGC	2 cut(s)	81, 175
Tsp45I	GTSAC	2 cut(s)	126, 487
TspDTI	ATGAA	1 cut(s)	299
TspRI	CASTG	2 cut(s)	39, 307
VpaK11BI	GGWCC	2 cut(s)	16, 23
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	352
XspI	CTAG	1 cut(s)	492
ZrmI	AGTACT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.