Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Forward (+)

13844990 .. 13846710

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0089500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCTTCAGCCAAGACGGTGTTATCGGTAATTGCAGCAACTGTGTTACTCACCTCTCTTCTCTGGAAACTCACATCTTCATCCTCATCTTCTTCCGCCGAGTCTATCGATTTCATCAAGAAGACCATCTCCTCCAACAAGATCGCCATCTTCTCCAAGTCCTATTGCCCATACTGTAGAAGGGCAAAGGCTGTTTTCAAAGAGTTGAAACAAGTGCCCTATGTGGTTGAGCTTGATGAGAGAGCTGATGGTCGGGACATCCAAGATGCTCTAAGTGAGGTTATTGGGAGGCGTACTGTTCCACAGGTGTTTGTAAATGGAAAGTACATTGGGGGATCTGATGATACTGTTGCAGCATATGAAAGTGGAGAACTGGCTAAGCTTCTAGGCCTTGAGGTCAGGCATAAGGATGATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

139

Amino Acids

15.18

Weight (kDa)

8.51

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	48 - 110	2.4e-18	Glutaredoxin
GST_N_2	PF13409	55 - 117	6.9e-06	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	343
AfaI	GTAC	2 cut(s)	295, 326
AgsI	TTSAA	2 cut(s)	199, 208
AluBI	AGCT	3 cut(s)	232, 245, 382
AluI	AGCT	3 cut(s)	232, 245, 382
AlwI	GGATC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	2 cut(s)	35, 353
AsuHPI	GGTGA	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	47, 365
BccI	CCATC	3 cut(s)	134, 155, 242
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	1 cut(s)	175
BisI	GCNGC	2 cut(s)	36, 354
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	2 cut(s)	37, 355
BmsI	GCATC	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	128
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	413
Bsa29I	ATCGAT	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	108
BseGI	GGATG	3 cut(s)	80, 258, 415
BseJI	GATNNNNATC	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	47, 365
BshFI	GGCC	1 cut(s)	390
BshVI	ATCGAT	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	141, 335, 412
Bsp1720I	GCTNAGC	1 cut(s)	378
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	390
BspDI	ATCGAT	1 cut(s)	108
BspPI	GGATC	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	378
BssMI	GATC	3 cut(s)	141, 335, 412
Bst4CI	ACNGT	5 cut(s)	19, 43, 176, 298, 349
Bst6I	CTCTTC	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	272, 378
BstF5I	GGATG	3 cut(s)	80, 258, 415
BstKTI	GATC	3 cut(s)	144, 338, 415
BstMBI	GATC	3 cut(s)	141, 335, 412
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	47, 365
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	390
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	80, 258, 415
CaiI	CAGNNNCTG	1 cut(s)	41
ClaI	ATCGAT	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	294, 325
CviJI	RGCY	8 cut(s)	5, 11, 191, 232, 245, 377, 382, 390
CviKI_1	RGCY	8 cut(s)	5, 11, 191, 232, 245, 377, 382, 390
CviQI	GTAC	2 cut(s)	294, 325
DdeI	CTNAG	2 cut(s)	272, 378
DpnI	GATC	3 cut(s)	143, 337, 414
DpnII	GATC	3 cut(s)	141, 335, 412
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	390
FaiI	YATR	5 cut(s)	172, 222, 358, 360, 405
FaqI	GGGAC	1 cut(s)	269
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	36, 354
FokI	GGATG	2 cut(s)	67, 245
Fsp4HI	GCNGC	2 cut(s)	36, 354
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	2 cut(s)	36, 354
HaeIII	GGCC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	3 cut(s)	64, 118, 254
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	5 cut(s)	19, 43, 176, 298, 349
HpyCH4V	TGCA	2 cut(s)	35, 353
HpyF3I	CTNAG	2 cut(s)	272, 378
Kzo9I	GATC	3 cut(s)	141, 335, 412
LpnPI	CCDG	4 cut(s)	49, 290, 359, 385
Lsp1109I	GCAGC	2 cut(s)	47, 365
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	3 cut(s)	143, 337, 414
MboI	GATC	3 cut(s)	141, 335, 412
MboII	GAAGA	6 cut(s)	50, 69, 81, 84, 133, 142
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	6 cut(s)	64, 94, 142, 271, 282, 388
MslI	CAYNNNNRTG	1 cut(s)	408
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	3 cut(s)	141, 335, 412
NmeAIII	GCCGAG	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	37, 355
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	2 cut(s)	295, 326
RsaNI	GTAC	2 cut(s)	294, 325
RseI	CAYNNNNRTG	1 cut(s)	408
SatI	GCNGC	2 cut(s)	36, 354
Sau3AI	GATC	3 cut(s)	141, 335, 412
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	7 cut(s)	56, 234, 247, 282, 309, 384, 399
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	1 cut(s)	30
SseBI	AGGCCT	1 cut(s)	390
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	386
StuI	AGGCCT	1 cut(s)	390
TaaI	ACNGT	5 cut(s)	19, 43, 176, 298, 349
TaqI	TCGA	1 cut(s)	108
TasI	AATT	1 cut(s)	30
TatI	WGTACW	1 cut(s)	324
TseI	GCWGC	2 cut(s)	35, 353
TspDTI	ATGAA	3 cut(s)	69, 103, 375
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.