Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Forward (+)

27105012 .. 27113027

Gene Structure 8016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG151400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTACCCTTCATCCTCATCATCCTCGTCCCAAAAGCCCATGGGCCCAAGCCCAACCGGCATCACCCGCTACGTCTCCGCTCCGGGCTCCCTCCTCACTTCCGCCGTCGACTCCGTCATTGGAGCAGTCGCCGAGCGTGAATTCTCCGCCCTCCGACCTGCTTCCTTCGTCGGCCGATACTTCTCCGGCGGCGGCGGCGGCGCAGATGGCGACTCCTCCTCCCTCACCTCCGAGTCAACCTTCAAAGTCAACCCATCCAACGCTGACAAGGAGGCCGCGAAGCCGCTGCCCAGATCGTACGGTTTGGGCGAGATGGCGGCCGCGATTGGATCTTCTTCTTCTACCTCGTGTTCTTCCTCGGCTTTGGTTCGCCAGAGAAGCTCTCCAGCTGGCTTCCTGAGCCATCTCACTGACAACAATGGAGGATTTTCAGTTACACGGGGAAGTGGAAGCTATAGCTCACAAGGTGGGCCTAATGGTGGCCATGGAGGAACAAGGTTGAAGTCCCAGTTGAGCTTCACTAGGCAAGATTCTCTTTCTCAAATCTCTGAAGTTAGTGAAAATGCTGTCGAAGGTGTTAGCTCTACCAGTGGCCAACATAGTGCCATGCATTCTTATCCCGCTAGTAGCTTTGGGATGGACTCCTGGGATAATACCAACTCTATTGTCTTTTCTGCTCCAACAAGTAAACGAGCTAAAAATATGGATGGTGACATATTTAACTGCCTCAATACCTTAGAATCTCAGTTTAGCCTGCCCCAGACAACTTTAGAAATGGCAACAGTGGAGAAGCTACTACACATCCCTGAAGATTCAGTTCCTTGCAAAATCCGTGCTAAGCGTGGCTGTGCAACTCATCCCAGAAGCATTGCTGAGAGGGTTAGTAACACTAAAGAGATAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

301

Amino Acids

31.29

Weight (kDa)

7.71

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AccBSI	CCGCTC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	2 cut(s)	278, 323
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	4 cut(s)	172, 318, 481, 592
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	2 cut(s)	570, 828
AdeI	CACNNNGTG	1 cut(s)	467
AfaI	GTAC	2 cut(s)	5, 299
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	2 cut(s)	244, 502
AjnI	CCWGG	1 cut(s)	644
AluBI	AGCT	9 cut(s)	381, 389, 453, 459, 516, 582, 630, 695, 793
AluI	AGCT	9 cut(s)	381, 389, 453, 459, 516, 582, 630, 695, 793
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	337
AoxI	GGCC	7 cut(s)	43, 172, 273, 318, 470, 481, 592
ApaI	GGGCCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	43, 44, 470
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	3 cut(s)	55, 217, 722
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	2 cut(s)	483, 594
BanII	GRGCYC	2 cut(s)	47, 89
BauI	CACGAG	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	6 cut(s)	200, 262, 307, 411, 631, 701
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	2 cut(s)	522, 624
BfmI	CTRYAG	1 cut(s)	454
BfuAI	ACCTGC	1 cut(s)	166
BglI	GCCNNNNNGGC	1 cut(s)	57
BisI	GCNGC	9 cut(s)	190, 193, 196, 199, 276, 284, 287, 318, 321
BlpI	GCTNAGC	1 cut(s)	837
BlsI	GCNGC	9 cut(s)	191, 194, 197, 200, 277, 285, 288, 319, 322
Bme1390I	CCNGG	2 cut(s)	84, 646
BmgT120I	GGNCC	3 cut(s)	43, 44, 470
BmiI	GGNNCC	2 cut(s)	45, 88
BmrFI	CCNGG	2 cut(s)	84, 646
BmrI	ACTGGG	1 cut(s)	502
BmsI	GCATC	1 cut(s)	69
BmuI	ACTGGG	1 cut(s)	502
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
BpmI	CTGGAG	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	398
Bpu1102I	GCTNAGC	1 cut(s)	837
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	39, 357, 484, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	508, 588
Bse3DI	GCAATG	1 cut(s)	867
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	4 cut(s)	39, 357, 484, 645
BseGI	GGATG	7 cut(s)	11, 20, 254, 642, 712, 801, 856
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	3 cut(s)	389, 758, 864
BseNI	ACTGG	2 cut(s)	508, 588
BseRI	GAGGAG	3 cut(s)	83, 205, 208
BseSI	GKGCMC	1 cut(s)	47
BseX3I	CGGCCG	2 cut(s)	172, 318
BseXI	GCAGC	1 cut(s)	273
Bsh1236I	CGCG	2 cut(s)	278, 323
Bsh1285I	CGRYCG	2 cut(s)	175, 321
BshFI	GGCC	7 cut(s)	45, 174, 275, 320, 472, 483, 594
BsiEI	CGRYCG	2 cut(s)	175, 321
BsiSI	CCGG	3 cut(s)	57, 83, 186
BsiWI	CGTACG	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	13, 490
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	2 cut(s)	13, 490
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	7 cut(s)	45, 174, 275, 320, 472, 483, 594
Bsp120I	GGGCCC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	47, 89
Bsp143I	GATC	2 cut(s)	293, 329
Bsp1720I	GCTNAGC	1 cut(s)	837
Bsp19I	CCATGG	2 cut(s)	39, 484
BspANI	GGCC	7 cut(s)	45, 174, 275, 320, 472, 483, 594
BspCNI	CTCAG	3 cut(s)	390, 757, 865
BspFNI	CGCG	2 cut(s)	278, 323
BspLI	GGNNCC	2 cut(s)	45, 88
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	867
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	508, 588
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	4 cut(s)	39, 357, 484, 645
BssMI	GATC	2 cut(s)	293, 329
BssSI	CACGAG	1 cut(s)	346
BssT1I	CCWWGG	2 cut(s)	39, 484
Bst2BI	CACGAG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	2 cut(s)	302, 784
BstC8I	GCNNGC	2 cut(s)	391, 755
BstDEI	CTNAG	5 cut(s)	398, 736, 744, 837, 873
BstDSI	CCRYGG	2 cut(s)	39, 484
BstF5I	GGATG	7 cut(s)	11, 20, 254, 642, 712, 801, 856
BstFNI	CGCG	2 cut(s)	278, 323
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	296, 332
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	2 cut(s)	293, 329
BstMCI	CGRYCG	2 cut(s)	175, 321
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 66, 195, 198, 207, 378, 399
BstNI	CCWGG	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	82, 644
BstSFI	CTRYAG	1 cut(s)	454
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	2 cut(s)	278, 323
BstV1I	GCAGC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BstZI	CGGCCG	2 cut(s)	172, 318
BsuRI	GGCC	7 cut(s)	45, 174, 275, 320, 472, 483, 594
BtgI	CCRYGG	2 cut(s)	39, 484
BtsCI	GGATG	7 cut(s)	11, 20, 254, 642, 712, 801, 856
BtsIMutI	CAGTG	3 cut(s)	408, 595, 789
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	391, 755
CciNI	GCGGCCGC	1 cut(s)	318
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	3 cut(s)	43, 44, 470
Csp6I	GTAC	2 cut(s)	4, 298
CviAII	CATG	3 cut(s)	40, 485, 607
CviQI	GTAC	2 cut(s)	4, 298
DdeI	CTNAG	5 cut(s)	398, 736, 744, 837, 873
DpnI	GATC	2 cut(s)	295, 331
DpnII	GATC	2 cut(s)	293, 329
DraIII	CACNNNGTG	1 cut(s)	467
EaeI	YGGCCR	4 cut(s)	172, 318, 481, 592
EagI	CGGCCG	2 cut(s)	172, 318
EciI	GGCGGA	2 cut(s)	91, 136
EclXI	CGGCCG	2 cut(s)	172, 318
Eco130I	CCWWGG	2 cut(s)	39, 484
Eco24I	GRGCYC	2 cut(s)	47, 89
Eco52I	CGGCCG	2 cut(s)	172, 318
Eco57I	CTGAAG	2 cut(s)	570, 828
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	644
EcoT14I	CCWWGG	2 cut(s)	39, 484
EcoT22I	ATGCAT	1 cut(s)	612
EcoT38I	GRGCYC	2 cut(s)	47, 89
ErhI	CCWWGG	2 cut(s)	39, 484
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	3 cut(s)	43, 488, 610
FaiI	YATR	8 cut(s)	41, 456, 486, 600, 608, 704, 716, 904
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	2 cut(s)	13, 490
FatI	CATG	3 cut(s)	39, 484, 606
FauI	CCCGC	2 cut(s)	74, 628
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	9 cut(s)	190, 193, 196, 199, 276, 284, 287, 318, 321
FokI	GGATG	6 cut(s)	7, 241, 649, 719, 788, 843
FriOI	GRGCYC	2 cut(s)	47, 89
Fsp4HI	GCNGC	9 cut(s)	190, 193, 196, 199, 276, 284, 287, 318, 321
FspBI	CTAG	2 cut(s)	522, 624
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	9 cut(s)	190, 193, 196, 199, 276, 284, 287, 318, 321
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	7 cut(s)	45, 174, 275, 320, 472, 483, 594
HapII	CCGG	3 cut(s)	57, 83, 186
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	43, 488, 610
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	3 cut(s)	109, 237, 250
HindII	GTYRAC	3 cut(s)	109, 237, 250
HinfI	GANTC	7 cut(s)	110, 212, 233, 530, 641, 740, 812
HpaII	CCGG	3 cut(s)	57, 83, 186
HphI	GGTGA	3 cut(s)	55, 217, 722
Hpy166II	GTNNAC	4 cut(s)	109, 237, 250, 689
Hpy188I	TCNGA	3 cut(s)	155, 232, 550
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	4 cut(s)	109, 237, 250, 689
Hpy99I	CGWCG	2 cut(s)	110, 173
HpyAV	CCTTC	4 cut(s)	18, 175, 250, 566
HpyCH4III	ACNGT	2 cut(s)	302, 784
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	610, 825, 851
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 66, 195, 198, 207, 378, 399
HpyF3I	CTNAG	5 cut(s)	398, 736, 744, 837, 873
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	43, 488, 610
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	293, 329
LmnI	GCTCC	4 cut(s)	85, 92, 122, 682
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	522, 624
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	433, 710, 884
MalI	GATC	2 cut(s)	295, 331
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	2 cut(s)	293, 329
MboII	GAAGA	5 cut(s)	324, 327, 330, 345, 821
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	2 cut(s)	47, 89
MlsI	TGGCCA	2 cut(s)	483, 594
MluCI	AATT	1 cut(s)	140
MluNI	TGGCCA	2 cut(s)	483, 594
MlyI	GAGTC	4 cut(s)	104, 206, 242, 635
MmeI	TCCRAC	3 cut(s)	178, 282, 704
Mox20I	TGGCCA	2 cut(s)	483, 594
Mph1103I	ATGCAT	1 cut(s)	612
MscI	TGGCCA	2 cut(s)	483, 594
MseI	TTAA	1 cut(s)	720
Msp20I	TGGCCA	2 cut(s)	483, 594
MspA1I	CMGCKG	2 cut(s)	286, 389
MspI	CCGG	3 cut(s)	57, 83, 186
MspR9I	CCNGG	2 cut(s)	84, 646
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	646
MvnI	CGCG	2 cut(s)	278, 323
MwoI	GCNNNNNNNGC	7 cut(s)	57, 66, 195, 198, 207, 378, 399
NciI	CCSGG	1 cut(s)	84
NcoI	CCATGG	2 cut(s)	39, 484
NdeII	GATC	2 cut(s)	293, 329
NlaIII	CATG	3 cut(s)	43, 488, 610
NlaIV	GGNNCC	2 cut(s)	45, 88
NmeAIII	GCCGAG	2 cut(s)	157, 338
NmuCI	GTSAC	1 cut(s)	710
NotI	GCGGCCGC	1 cut(s)	318
NsiI	ATGCAT	1 cut(s)	612
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	610
PfeI	GAWTC	3 cut(s)	530, 740, 812
Pfl23II	CGTACG	1 cut(s)	297
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	9 cut(s)	191, 194, 197, 200, 277, 285, 288, 319, 322
PleI	GAGTC	4 cut(s)	104, 206, 241, 635
PpsI	GAGTC	4 cut(s)	104, 206, 241, 635
Psp6I	CCWGG	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	644
PspLI	CGTACG	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	45, 88
PspOMI	GGGCCC	1 cut(s)	43
PspPI	GGNCC	3 cut(s)	43, 44, 470
PsuI	RGATCY	1 cut(s)	329
PsyI	GACNNNGTC	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	5, 299
RsaNI	GTAC	2 cut(s)	4, 298
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	720
SatI	GCNGC	9 cut(s)	190, 193, 196, 199, 276, 284, 287, 318, 321
Sau3AI	GATC	2 cut(s)	293, 329
Sau96I	GGNCC	3 cut(s)	43, 44, 470
SchI	GAGTC	4 cut(s)	104, 206, 242, 635
ScrFI	CCNGG	2 cut(s)	84, 646
SduI	GDGCHC	2 cut(s)	47, 89
SfaNI	GCATC	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	454
Sse9I	AATT	1 cut(s)	140
SspMI	CTAG	2 cut(s)	522, 624
StyD4I	CCNGG	2 cut(s)	82, 644
StyI	CCWWGG	2 cut(s)	39, 484
TaaI	ACNGT	2 cut(s)	302, 784
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	108, 570
TasI	AATT	1 cut(s)	140
TauI	GCSGC	8 cut(s)	192, 195, 198, 201, 278, 286, 320, 323
TfiI	GAWTC	3 cut(s)	530, 740, 812
Tru1I	TTAA	1 cut(s)	720
Tru9I	TTAA	1 cut(s)	720
TscAI	CASTG	3 cut(s)	415, 595, 789
TseFI	GTSAC	1 cut(s)	710
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	710
TspGWI	ACGGA	2 cut(s)	103, 821
TspRI	CASTG	3 cut(s)	415, 595, 789
Tth111I	GACNNNGTC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	522, 624
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.