Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Reverse (-)

54505507 .. 54506575

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGGTGGTTCTTGTGTTGGCGATACGACAAGAAAGCCACAACGAGTCCCCCGAGACCTCCACAAGTTCATCGGCTTCAATTCGGACCAAACCAGAAAAAGTAAAGCACGAACCTCTAACTTTTGCTTCGAGGAAACCAAGCGAGGCAGCAGGAATTGACCGCCGATTTGGTGATGGCGGAAGGCTACGAGTCGTTCTTCTCTGCACCCGGACCTCCGAACGAGGCCTTGCCGGGTATTCGGTGTGGCTACATTTTGTCCGGTCAAGTCGGCGTTTATTAGTGATGAGATGGCGGCCGCGATTGGATCTTCTTCTTCTACCTCGTGTTCTTCCTCGGCTCGGTTCGCCGCAGAAGCTCTCCACTGGCTTCCCGAGCCATCTCACCGATAACAATGGAGGATTTTCGGTTACACGGGGAAGTGGAAGCTATAGCTCACAAGGTGGGCCTAATGGTGGCCATGGAGGAACAAGGTTGAAGTCCCGGTTGAGCTTCACTAGGCAAGATTCTCTTTCTCAAATCTGCGAAGTTAGTGAAGATGCTTGTAGAAGGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

185

Amino Acids

20.4

Weight (kDa)

10.76

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	301
AciI	CCGC	5 cut(s)	163, 180, 295, 299, 350
AclWI	GGATC	1 cut(s)	315
AcoI	YGGCCR	2 cut(s)	296, 457
AdeI	CACNNNGTG	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	341, 455
AgsI	TTSAA	2 cut(s)	81, 478
AluBI	AGCT	4 cut(s)	358, 429, 435, 492
AluI	AGCT	4 cut(s)	358, 429, 435, 492
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	315
Ama87I	CYCGRG	2 cut(s)	53, 373
AoxI	GGCC	4 cut(s)	226, 296, 446, 457
ApeKI	GCWGC	1 cut(s)	149
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspS9I	GGNCC	3 cut(s)	87, 213, 446
AsuC2I	CCSGG	3 cut(s)	211, 235, 484
AsuHPI	GGTGA	2 cut(s)	185, 376
AvaI	CYCGRG	2 cut(s)	53, 373
AvaII	GGWCC	2 cut(s)	87, 213
BalI	TGGCCA	1 cut(s)	459
BauI	CACGAG	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	3 cut(s)	170, 285, 387
BcnI	CCSGG	3 cut(s)	211, 235, 484
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	430
BisI	GCNGC	4 cut(s)	150, 296, 299, 350
BlsI	GCNGC	4 cut(s)	151, 297, 300, 351
Bme1390I	CCNGG	3 cut(s)	211, 235, 484
Bme18I	GGWCC	2 cut(s)	87, 213
BmeT110I	CYCGRG	2 cut(s)	53, 373
BmgT120I	GGNCC	3 cut(s)	87, 213, 446
BmrFI	CCNGG	3 cut(s)	211, 235, 484
BmsI	GCATC	1 cut(s)	529
BpuMI	CCSGG	3 cut(s)	211, 235, 484
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	335, 460
BsaWI	WCCGGW	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 455
Bse1I	ACTGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	335, 460
BseLI	CCNNNNNNNGG	2 cut(s)	341, 455
BseNI	ACTGG	1 cut(s)	370
BseX3I	CGGCCG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	161
BsgI	GTGCAG	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	301
Bsh1285I	CGRYCG	1 cut(s)	299
BshFI	GGCC	4 cut(s)	228, 298, 448, 459
BsiEI	CGRYCG	1 cut(s)	299
BsiHKCI	CYCGRG	2 cut(s)	53, 373
BsiSI	CCGG	4 cut(s)	211, 234, 262, 484
BslFI	GGGAC	2 cut(s)	34, 466
BslI	CCNNNNNNNGG	2 cut(s)	341, 455
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	2 cut(s)	34, 466
BsnI	GGCC	4 cut(s)	228, 298, 448, 459
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	2 cut(s)	53, 373
Bsp143I	GATC	1 cut(s)	307
Bsp19I	CCATGG	1 cut(s)	460
BspACI	CCGC	5 cut(s)	163, 180, 295, 299, 350
BspANI	GGCC	4 cut(s)	228, 298, 448, 459
BspFNI	CGCG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	315
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	335, 460
BssMI	GATC	1 cut(s)	307
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	460
Bst2BI	CACGAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	301
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	307
BstMCI	CGRYCG	1 cut(s)	299
BstMWI	GCNNNNNNNGC	3 cut(s)	346, 355, 375
BstSCI	CCNGG	3 cut(s)	209, 233, 482
BstSFI	CTRYAG	1 cut(s)	430
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BstZI	CGGCCG	1 cut(s)	296
BsuRI	GGCC	4 cut(s)	228, 298, 448, 459
BtgI	CCRYGG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	363
CciNI	GCGGCCGC	1 cut(s)	296
Cfr13I	GGNCC	3 cut(s)	87, 213, 446
CviAII	CATG	1 cut(s)	461
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
DraIII	CACNNNGTG	1 cut(s)	443
EaeI	YGGCCR	2 cut(s)	296, 457
EagI	CGGCCG	1 cut(s)	296
EciI	GGCGGA	1 cut(s)	195
EclXI	CGGCCG	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	460
Eco147I	AGGCCT	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	87, 213
Eco52I	CGGCCG	1 cut(s)	296
Eco88I	CYCGRG	2 cut(s)	53, 373
EcoT14I	CCWWGG	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	1 cut(s)	464
FaiI	YATR	2 cut(s)	432, 462
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FaqI	GGGAC	2 cut(s)	34, 466
FatI	CATG	1 cut(s)	460
Fnu4HI	GCNGC	4 cut(s)	150, 296, 299, 350
Fsp4HI	GCNGC	4 cut(s)	150, 296, 299, 350
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	4 cut(s)	150, 296, 299, 350
HaeIII	GGCC	4 cut(s)	228, 298, 448, 459
HapII	CCGG	4 cut(s)	211, 234, 262, 484
Hin1II	CATG	1 cut(s)	464
HinfI	GANTC	3 cut(s)	47, 192, 506
HpaII	CCGG	4 cut(s)	211, 234, 262, 484
HphI	GGTGA	2 cut(s)	185, 376
Hpy188I	TCNGA	2 cut(s)	87, 220
Hpy188III	TCNNGA	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	177, 543
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	3 cut(s)	346, 355, 375
Hsp92II	CATG	1 cut(s)	464
Kzo9I	GATC	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	108, 138, 224, 247, 275, 351, 497
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	6 cut(s)	191, 302, 305, 308, 323, 548
MflI	RGATCY	1 cut(s)	307
MlsI	TGGCCA	1 cut(s)	459
MluCI	AATT	2 cut(s)	81, 156
MluNI	TGGCCA	1 cut(s)	459
MlyI	GAGTC	2 cut(s)	56, 201
Mox20I	TGGCCA	1 cut(s)	459
MscI	TGGCCA	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	459
MspI	CCGG	4 cut(s)	211, 234, 262, 484
MspR9I	CCNGG	3 cut(s)	211, 235, 484
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	3 cut(s)	346, 355, 375
NciI	CCSGG	3 cut(s)	211, 235, 484
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	464
NmeAIII	GCCGAG	1 cut(s)	316
NotI	GCGGCCGC	1 cut(s)	296
PceI	AGGCCT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	4 cut(s)	151, 297, 300, 351
PleI	GAGTC	2 cut(s)	55, 200
PpsI	GAGTC	2 cut(s)	55, 200
PspPI	GGNCC	3 cut(s)	87, 213, 446
PsuI	RGATCY	1 cut(s)	307
SatI	GCNGC	4 cut(s)	150, 296, 299, 350
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	3 cut(s)	87, 213, 446
SchI	GAGTC	2 cut(s)	56, 201
ScrFI	CCNGG	3 cut(s)	211, 235, 484
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	430
SinI	GGWCC	2 cut(s)	87, 213
Sse9I	AATT	2 cut(s)	81, 156
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	5 cut(s)	163, 180, 295, 299, 350
SspMI	CTAG	1 cut(s)	498
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	3 cut(s)	209, 233, 482
StyI	CCWWGG	1 cut(s)	460
TaqI	TCGA	1 cut(s)	131
TasI	AATT	2 cut(s)	81, 156
TauI	GCSGC	3 cut(s)	298, 301, 352
TfiI	GAWTC	1 cut(s)	506
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	87, 213
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.