Rh4DG146600

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
29242254 .. 29249400
7147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG146600.1

Sequence Viewer

Length: 1053 bp
ATGTACCCTTCATCCTCATCATCCTCGTCCCAAAAGCCCATGGGCCCGAGCCCAACCGGCATCACCCGCTACGGCTCCGCTCCGGGCTCCCTCCTCACCTCCGCCGTCGACTCCGTCATTGGAGCAGTCGCCGAGCGTGAATTCTCCCCCCTCCGACCTGCTTCCTTCGTCGGCCGATACTTATCCGGCGGCGGCGGCGGCGCAGATGGCGACTCCTCCTCCCTCACCTCCGAGTCAACCTTCAGAGTCAACCCATCCAACGCTGACAAGGAGGCCACGAAGCCGCTGCCCAGATCGTACGGTTTGGGCGAGATGGCGGCCGCTATTGGATCTTCGTCTTCTACCTCGTGTTCTTCCTCGGCTTTGGTTCGCCAGAGAAGCTCTCCAGCTGGCTTTCTGAGCCATCTCACTGACAACAATGGAGGATTTTCAGTTACACGGGGAAGTGGAAGCTATAGCTCACAAGGTGGGCCTAATGGTGGCCATGGAGGAACAAGGTTGAAGTCCCAGTTGAGCTTCACTAGGCAAGATTCTCTTTCTCAAATCTCTGAAGTTAGTGAAAATGCTGTCGAAGGTGTTAGCTCTACCAGTGGCCAACATAGTGCCATGCATTCTTATCCCGCTAGTAGCTTTGGGATGGACTCCTGGGATAATACCAACTCTATTGTCTTTTCTGCTCCAACAAGTAAACGAGCTAAAAATATGGATGGTGACATATTTAACTGCCTCAATACCTTAGAATCTCAGTTTAGCCTGCCCCAGACAACTTTAGAAATGGCAACAGTGGAGAAGCTACTACACATCCCTGAAGATTCAGTTCCTTGCAAAATCCGTGCTAAGCGTGGCTGTGCAACTCATCCCAGAAGCATTGCTGAGAGGGAGAGAAGAACTAGAATAAGTGGGAAGTTAAAGAAACTGCAAGACCTTGTCCCTAACATGGATAAGCAAACAAGCTATGCAGACATGTTGGATTTGGCTGTGCAACACATCAAGGGTCTACAAAATCAAGTCCAGGTTTGTAAATCACCACTCTATAATGACAAACAGAGATAA

Protein Analysis

350

Amino Acids

37.03

Weight (kDa)

9.04

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 289 - 334 3.7e-09 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AccBSI CCGCTC 1 cut(s) 80
AccI GTMKAC 2 cut(s) 108, 997
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 4 cut(s) 172, 318, 481, 592
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 3 cut(s) 226, 570, 828
AdeI CACNNNGTG 1 cut(s) 467
AfaI GTAC 2 cut(s) 5, 299
AfiI CCNNNNNNNGG 2 cut(s) 479, 937
AflIII ACRYGT 1 cut(s) 963
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 2 cut(s) 644, 1011
AlwI GGATC 1 cut(s) 337
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 7 cut(s) 43, 172, 273, 318, 470, 481, 592
ApaI GGGCCC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 286
ApoI RAATTY 1 cut(s) 140
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 43, 44, 470
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 5 cut(s) 55, 88, 217, 722, 1017
AvaI CYCGRG 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 47
BalI TGGCCA 2 cut(s) 483, 594
BanII GRGCYC 3 cut(s) 47, 53, 89
BauI CACGAG 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 273
BccI CCATC 6 cut(s) 200, 262, 307, 411, 631, 701
BceAI ACGGC 2 cut(s) 88, 89
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 2 cut(s) 646, 1013
BcnI CCSGG 1 cut(s) 84
BfaI CTAG 3 cut(s) 522, 624, 891
BfmI CTRYAG 1 cut(s) 454
BfuAI ACCTGC 1 cut(s) 166
BglI GCCNNNNNGGC 1 cut(s) 57
BisI GCNGC 8 cut(s) 190, 193, 196, 199, 284, 287, 318, 321
BlpI GCTNAGC 1 cut(s) 837
BlsI GCNGC 8 cut(s) 191, 194, 197, 200, 285, 288, 319, 322
Bme1390I CCNGG 3 cut(s) 84, 646, 1013
BmeT110I CYCGRG 1 cut(s) 46
BmgT120I GGNCC 3 cut(s) 43, 44, 470
BmiI GGNNCC 3 cut(s) 45, 76, 88
BmrFI CCNGG 3 cut(s) 84, 646, 1013
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 330
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BpmI CTGGAG 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 837
BpuMI CCSGG 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 181
BsaJI CCNNGG 4 cut(s) 39, 357, 484, 645
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 479, 937
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 508, 588
Bse3DI GCAATG 1 cut(s) 867
Bse8I GATNNNNATC 1 cut(s) 181
BseBI CCWGG 2 cut(s) 646, 1013
BseDI CCNNGG 4 cut(s) 39, 357, 484, 645
BseGI GGATG 7 cut(s) 11, 20, 254, 642, 712, 801, 856
BseJI GATNNNNATC 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 479, 937
BseMI GCAATG 1 cut(s) 867
BseMII CTCAG 3 cut(s) 389, 758, 864
BseNI ACTGG 2 cut(s) 508, 588
BseRI GAGGAG 3 cut(s) 83, 205, 208
BseSI GKGCMC 1 cut(s) 47
BseX3I CGGCCG 2 cut(s) 172, 318
BseXI GCAGC 1 cut(s) 273
Bsh1285I CGRYCG 2 cut(s) 175, 321
BshFI GGCC 7 cut(s) 45, 174, 275, 320, 472, 483, 594
BsiEI CGRYCG 2 cut(s) 175, 321
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 3 cut(s) 57, 83, 186
BsiWI CGTACG 1 cut(s) 297
BslFI GGGAC 3 cut(s) 13, 490, 914
BslI CCNNNNNNNGG 2 cut(s) 479, 937
BsmFI GGGAC 3 cut(s) 13, 490, 914
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 7 cut(s) 45, 174, 275, 320, 472, 483, 594
BsoBI CYCGRG 1 cut(s) 46
Bsp120I GGGCCC 1 cut(s) 43
Bsp1286I GDGCHC 3 cut(s) 47, 53, 89
Bsp143I GATC 2 cut(s) 293, 329
Bsp1720I GCTNAGC 1 cut(s) 837
Bsp19I CCATGG 2 cut(s) 39, 484
BspANI GGCC 7 cut(s) 45, 174, 275, 320, 472, 483, 594
BspCNI CTCAG 3 cut(s) 390, 757, 865
BspLI GGNNCC 3 cut(s) 45, 76, 88
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 1 cut(s) 337
BsrBI CCGCTC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 867
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 2 cut(s) 508, 588
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 4 cut(s) 39, 357, 484, 645
BssMI GATC 2 cut(s) 293, 329
BssSI CACGAG 1 cut(s) 346
BssT1I CCWWGG 2 cut(s) 39, 484
Bst2BI CACGAG 1 cut(s) 346
Bst2UI CCWGG 2 cut(s) 646, 1013
Bst4CI ACNGT 2 cut(s) 302, 784
BstC8I GCNNGC 2 cut(s) 391, 755
BstDEI CTNAG 5 cut(s) 398, 736, 744, 837, 873
BstDSI CCRYGG 2 cut(s) 39, 484
BstF5I GGATG 7 cut(s) 11, 20, 254, 642, 712, 801, 856
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 296, 332
BstMBI GATC 2 cut(s) 293, 329
BstMCI CGRYCG 2 cut(s) 175, 321
BstMWI GCNNNNNNNGC 7 cut(s) 57, 66, 195, 198, 207, 378, 399
BstNI CCWGG 2 cut(s) 646, 1013
BstNSI RCATGY 1 cut(s) 967
BstSCI CCNGG 3 cut(s) 82, 644, 1011
BstSFI CTRYAG 1 cut(s) 454
BstSLI GKGCMC 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BstZI CGGCCG 2 cut(s) 172, 318
BsuRI GGCC 7 cut(s) 45, 174, 275, 320, 472, 483, 594
BtgI CCRYGG 2 cut(s) 39, 484
BtsCI GGATG 7 cut(s) 11, 20, 254, 642, 712, 801, 856
BtsIMutI CAGTG 3 cut(s) 408, 595, 789
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 391, 755
CciNI GCGGCCGC 1 cut(s) 318
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 43, 44, 470
Csp6I GTAC 2 cut(s) 4, 298
CviAII CATG 5 cut(s) 40, 485, 607, 937, 964
CviQI GTAC 2 cut(s) 4, 298
DdeI CTNAG 5 cut(s) 398, 736, 744, 837, 873
DpnI GATC 2 cut(s) 295, 331
DpnII GATC 2 cut(s) 293, 329
DraIII CACNNNGTG 1 cut(s) 467
EaeI YGGCCR 4 cut(s) 172, 318, 481, 592
EagI CGGCCG 2 cut(s) 172, 318
EciI GGCGGA 1 cut(s) 91
EclXI CGGCCG 2 cut(s) 172, 318
Eco130I CCWWGG 2 cut(s) 39, 484
Eco24I GRGCYC 3 cut(s) 47, 53, 89
Eco52I CGGCCG 2 cut(s) 172, 318
Eco57I CTGAAG 3 cut(s) 226, 570, 828
Eco88I CYCGRG 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 644, 1011
EcoT14I CCWWGG 2 cut(s) 39, 484
EcoT22I ATGCAT 1 cut(s) 612
EcoT38I GRGCYC 3 cut(s) 47, 53, 89
ErhI CCWWGG 2 cut(s) 39, 484
FaeI CATG 5 cut(s) 43, 488, 610, 940, 967
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 3 cut(s) 13, 490, 914
FatI CATG 5 cut(s) 39, 484, 606, 936, 963
FauI CCCGC 2 cut(s) 74, 628
FblI GTMKAC 2 cut(s) 108, 997
Fnu4HI GCNGC 8 cut(s) 190, 193, 196, 199, 284, 287, 318, 321
FokI GGATG 6 cut(s) 7, 241, 649, 719, 788, 843
FriOI GRGCYC 3 cut(s) 47, 53, 89
Fsp4HI GCNGC 8 cut(s) 190, 193, 196, 199, 284, 287, 318, 321
FspBI CTAG 3 cut(s) 522, 624, 891
GlaI GCGC 1 cut(s) 202
GluI GCNGC 8 cut(s) 190, 193, 196, 199, 284, 287, 318, 321
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 7 cut(s) 45, 174, 275, 320, 472, 483, 594
HapII CCGG 3 cut(s) 57, 83, 186
HhaI GCGC 1 cut(s) 203
Hin1II CATG 5 cut(s) 43, 488, 610, 940, 967
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 3 cut(s) 109, 237, 250
HindII GTYRAC 3 cut(s) 109, 237, 250
HinfI GANTC 8 cut(s) 110, 212, 233, 246, 530, 641, 740, 812
HpaII CCGG 3 cut(s) 57, 83, 186
HphI GGTGA 5 cut(s) 55, 88, 217, 722, 1017
Hpy166II GTNNAC 5 cut(s) 109, 237, 250, 689, 998
Hpy188I TCNGA 5 cut(s) 155, 232, 245, 399, 550
Hpy8I GTNNAC 5 cut(s) 109, 237, 250, 689, 998
Hpy99I CGWCG 2 cut(s) 110, 173
HpyAV CCTTC 4 cut(s) 18, 175, 250, 566
HpyCH4III ACNGT 2 cut(s) 302, 784
HpyCH4V TGCA 6 cut(s) 610, 825, 851, 919, 959, 982
HpyF10VI GCNNNNNNNGC 7 cut(s) 57, 66, 195, 198, 207, 378, 399
HpyF3I CTNAG 5 cut(s) 398, 736, 744, 837, 873
Hsp92II CATG 5 cut(s) 43, 488, 610, 940, 967
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 293, 329
LmnI GCTCC 5 cut(s) 80, 85, 92, 122, 682
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 69
MaeI CTAG 3 cut(s) 522, 624, 891
MaeIII GTNAC 2 cut(s) 433, 710
MalI GATC 2 cut(s) 295, 331
MbiI CCGCTC 1 cut(s) 80
MboI GATC 2 cut(s) 293, 329
MboII GAAGA 5 cut(s) 324, 330, 345, 821, 897
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 3 cut(s) 47, 53, 89
MlsI TGGCCA 2 cut(s) 483, 594
MluCI AATT 1 cut(s) 140
MluNI TGGCCA 2 cut(s) 483, 594
MlyI GAGTC 5 cut(s) 104, 206, 242, 255, 635
MmeI TCCRAC 4 cut(s) 178, 282, 704, 948
Mox20I TGGCCA 2 cut(s) 483, 594
Mph1103I ATGCAT 1 cut(s) 612
MscI TGGCCA 2 cut(s) 483, 594
MseI TTAA 2 cut(s) 720, 908
Msp20I TGGCCA 2 cut(s) 483, 594
MspA1I CMGCKG 2 cut(s) 286, 389
MspI CCGG 3 cut(s) 57, 83, 186
MspR9I CCNGG 3 cut(s) 84, 646, 1013
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 2 cut(s) 646, 1013
MwoI GCNNNNNNNGC 7 cut(s) 57, 66, 195, 198, 207, 378, 399
NciI CCSGG 1 cut(s) 84
NcoI CCATGG 2 cut(s) 39, 484
NdeII GATC 2 cut(s) 293, 329
NlaIII CATG 5 cut(s) 43, 488, 610, 940, 967
NlaIV GGNNCC 3 cut(s) 45, 76, 88
NmeAIII GCCGAG 2 cut(s) 157, 338
NmuCI GTSAC 1 cut(s) 710
NotI GCGGCCGC 1 cut(s) 318
NsiI ATGCAT 1 cut(s) 612
NspI RCATGY 1 cut(s) 967
PciI ACATGT 1 cut(s) 963
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 610
PfeI GAWTC 3 cut(s) 530, 740, 812
Pfl23II CGTACG 1 cut(s) 297
PflFI GACNNNGTC 2 cut(s) 113, 926
PkrI GCNGC 8 cut(s) 191, 194, 197, 200, 285, 288, 319, 322
PleI GAGTC 5 cut(s) 104, 206, 241, 254, 635
PpsI GAGTC 5 cut(s) 104, 206, 241, 254, 635
PscI ACATGT 1 cut(s) 963
Psp6I CCWGG 2 cut(s) 644, 1011
PspGI CCWGG 2 cut(s) 644, 1011
PspLI CGTACG 1 cut(s) 297
PspN4I GGNNCC 3 cut(s) 45, 76, 88
PspOMI GGGCCC 1 cut(s) 43
PspPI GGNCC 3 cut(s) 43, 44, 470
PsuI RGATCY 1 cut(s) 329
PsyI GACNNNGTC 2 cut(s) 113, 926
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 2 cut(s) 5, 299
RsaNI GTAC 2 cut(s) 4, 298
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 720, 908
SatI GCNGC 8 cut(s) 190, 193, 196, 199, 284, 287, 318, 321
Sau3AI GATC 2 cut(s) 293, 329
Sau96I GGNCC 3 cut(s) 43, 44, 470
SchI GAGTC 5 cut(s) 104, 206, 242, 255, 635
ScrFI CCNGG 3 cut(s) 84, 646, 1013
SduI GDGCHC 3 cut(s) 47, 53, 89
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 454
Sse9I AATT 1 cut(s) 140
SspMI CTAG 3 cut(s) 522, 624, 891
StyD4I CCNGG 3 cut(s) 82, 644, 1011
StyI CCWWGG 2 cut(s) 39, 484
TaaI ACNGT 2 cut(s) 302, 784
TaqI TCGA 2 cut(s) 108, 570
TasI AATT 1 cut(s) 140
TauI GCSGC 7 cut(s) 192, 195, 198, 201, 286, 320, 323
TfiI GAWTC 3 cut(s) 530, 740, 812
Tru1I TTAA 2 cut(s) 720, 908
Tru9I TTAA 2 cut(s) 720, 908
TscAI CASTG 3 cut(s) 415, 595, 789
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 710
TspGWI ACGGA 2 cut(s) 103, 821
TspRI CASTG 3 cut(s) 415, 595, 789
Tth111I GACNNNGTC 2 cut(s) 113, 926
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 967
XmiI GTMKAC 2 cut(s) 108, 997
XspI CTAG 3 cut(s) 522, 624, 891
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.