AT1G05970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002030
Physical Location & Seq
Reverse (-)
1815825 .. 1817336
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05970.2

Sequence Viewer

Length: 597 bp
ATGGCGACTCCGGAAGAAGTAGCGTATGAGAAGTTCCTAGAGAGAGTTCGTCGTACTGTCTACGTAGACGAACTCACGCCTCTTGCCACAGCTCCTGTTATTTCATCTGCTTTCAATCAGTTTGGGACTGTCAAGAAAGTCAGCTTCATACCTAACTACTTGGGTCCAAAGGAGCTTCCTATGGGTGTTCTTGTTGAGATGGAGAATGAAGAGATGACACAGGCTGTTATCTCTACTGTCTCACAGTTACCTTTCATGGTTGCTGGTATGCCAAGGCCTGTGAGAGCTTGTGCTGCTGAGCCTAATATGTTTGTTGATAAACCGAAGAAGCCTGGTAGAACGGTCCGTTTTCGCTGGATTAAGCCTAACGATCCTGATTTCGACAAGGCCAGGAGAGTCAAGCGGCTTGCTCGTAAGCATAGTGCTGAAAATTCGTTCATGCTCAAGCTTGAGGAGGCAGAGAAGCTGTCGAAACAGCAAGCTGAGACGGCGGTAACACATCACAAGAAGTTTGAGATGATGGATAAACTCCTCTACGATGGTGTTGCTCAGAAACTGGCTGGCCGTTACGACCTGAAAGGTTTTCCTTATCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

198

Amino Acids

22.65

Weight (kDa)

9.52

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 60, 66
AccIII TCCGGA 1 cut(s) 10
AciI CCGC 2 cut(s) 403, 491
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 1 cut(s) 430
AfaI GTAC 1 cut(s) 55
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 2 cut(s) 331, 389
AluBI AGCT 7 cut(s) 92, 144, 175, 287, 448, 466, 482
AluI AGCT 7 cut(s) 92, 144, 175, 287, 448, 466, 482
Alw26I GTCTC 2 cut(s) 244, 479
AlwI GGATC 1 cut(s) 365
AlwNI CAGNNNCTG 2 cut(s) 95, 556
Aor13HI TCCGGA 1 cut(s) 10
AoxI GGCC 3 cut(s) 275, 387, 562
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 430
AspS9I GGNCC 2 cut(s) 164, 343
AvaII GGWCC 2 cut(s) 164, 343
BbvI GCAGC 1 cut(s) 280
BccI CCATC 3 cut(s) 193, 514, 533
BceAI ACGGC 2 cut(s) 504, 549
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 2 cut(s) 333, 391
BcoDI GTCTC 2 cut(s) 244, 479
BfaI CTAG 1 cut(s) 38
BisI GCNGC 2 cut(s) 294, 404
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 2 cut(s) 295, 405
Bme1390I CCNGG 2 cut(s) 333, 391
Bme18I GGWCC 2 cut(s) 164, 343
BmgT120I GGNCC 2 cut(s) 164, 343
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 333, 391
Bpu1102I GCTNAGC 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 428, 470
BsaAI YACGTR 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 561
BseAI TCCGGA 1 cut(s) 10
BseBI CCWGG 2 cut(s) 333, 391
BseDI CCNNGG 1 cut(s) 272
BseMII CTCAG 3 cut(s) 288, 474, 563
BseNI ACTGG 1 cut(s) 561
BseRI GAGGAG 2 cut(s) 467, 521
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 3 cut(s) 277, 389, 564
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 244, 479
BsmBI CGTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 3 cut(s) 277, 389, 564
Bsp13I TCCGGA 1 cut(s) 10
Bsp143I GATC 1 cut(s) 370
Bsp1720I GCTNAGC 1 cut(s) 297
BspACI CCGC 2 cut(s) 403, 491
BspANI GGCC 3 cut(s) 277, 389, 564
BspCNI CTCAG 3 cut(s) 289, 475, 562
BspEI TCCGGA 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 1 cut(s) 365
BsrI ACTGG 1 cut(s) 561
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 2 cut(s) 333, 391
Bst4CI ACNGT 5 cut(s) 58, 130, 238, 246, 343
Bst6I CTCTTC 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 64
BstC8I GCNNGC 3 cut(s) 408, 480, 562
BstDEI CTNAG 3 cut(s) 297, 483, 549
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 2 cut(s) 244, 479
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 2 cut(s) 293, 488
BstNI CCWGG 2 cut(s) 333, 391
BstSCI CCNGG 2 cut(s) 331, 389
BstSNI TACGTA 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 280
BsuRI GGCC 3 cut(s) 277, 389, 564
Cac8I GCNNGC 3 cut(s) 408, 480, 562
CaiI CAGNNNCTG 2 cut(s) 95, 556
Cfr13I GGNCC 2 cut(s) 164, 343
CpoI CGGWCCG 1 cut(s) 343
Csp6I GTAC 1 cut(s) 54
CspI CGGWCCG 1 cut(s) 343
CviAII CATG 2 cut(s) 256, 439
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 3 cut(s) 297, 483, 549
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco105I TACGTA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 272
Eco147I AGGCCT 1 cut(s) 277
Eco47I GGWCC 2 cut(s) 164, 343
EcoRII CCWGG 2 cut(s) 331, 389
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 479
FaeI CATG 2 cut(s) 259, 442
FaiI YATR 8 cut(s) 27, 149, 182, 257, 269, 308, 420, 440
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 255, 438
FblI GTMKAC 2 cut(s) 60, 66
Fnu4HI GCNGC 2 cut(s) 294, 404
Fsp4HI GCNGC 2 cut(s) 294, 404
FspBI CTAG 1 cut(s) 38
GluI GCNGC 2 cut(s) 294, 404
HaeIII GGCC 3 cut(s) 277, 389, 564
HapII CCGG 1 cut(s) 11
Hin1II CATG 2 cut(s) 259, 442
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 2 cut(s) 7, 396
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 2 cut(s) 61, 67
Hpy188I TCNGA 1 cut(s) 552
Hpy188III TCNNGA 3 cut(s) 11, 133, 374
Hpy8I GTNNAC 2 cut(s) 61, 67
Hpy99I CGWCG 1 cut(s) 54
HpyCH4III ACNGT 5 cut(s) 58, 130, 238, 246, 343
HpyCH4IV ACGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 488
HpyF3I CTNAG 3 cut(s) 297, 483, 549
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 2 cut(s) 259, 442
Kpn2I TCCGGA 1 cut(s) 10
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 2 cut(s) 97, 172
Lsp1109I GCAGC 1 cut(s) 280
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 246, 493, 566
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 3 cut(s) 26, 221, 337
MluCI AATT 1 cut(s) 430
MlyI GAGTC 1 cut(s) 405
MnlI CCTC 4 cut(s) 90, 445, 448, 542
MroI TCCGGA 1 cut(s) 10
MseI TTAA 1 cut(s) 360
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 333, 391
MvaI CCWGG 2 cut(s) 333, 391
MwoI GCNNNNNNNGC 2 cut(s) 293, 488
NdeII GATC 1 cut(s) 370
NlaIII CATG 2 cut(s) 259, 442
NlaIV GGNNCC 1 cut(s) 165
PceI AGGCCT 1 cut(s) 277
PkrI GCNGC 2 cut(s) 295, 405
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
Ppu21I YACGTR 1 cut(s) 64
Psp6I CCWGG 2 cut(s) 331, 389
PspGI CCWGG 2 cut(s) 331, 389
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 164, 343
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
PstNI CAGNNNCTG 2 cut(s) 95, 556
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
Rsr2I CGGWCCG 1 cut(s) 343
RsrII CGGWCCG 1 cut(s) 343
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 2 cut(s) 294, 404
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 2 cut(s) 164, 343
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 2 cut(s) 333, 391
SinI GGWCC 2 cut(s) 164, 343
SmlI CTYRAG 2 cut(s) 443, 449
SmoI CTYRAG 2 cut(s) 443, 449
SnaBI TACGTA 1 cut(s) 64
Sse9I AATT 1 cut(s) 430
SseBI AGGCCT 1 cut(s) 277
SsiI CCGC 2 cut(s) 403, 491
SspMI CTAG 1 cut(s) 38
StuI AGGCCT 1 cut(s) 277
StyD4I CCNGG 2 cut(s) 331, 389
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 5 cut(s) 58, 130, 238, 246, 343
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 381, 470
TasI AATT 1 cut(s) 430
TauI GCSGC 1 cut(s) 406
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 5 cut(s) 93, 136, 222, 244, 427
TspGWI ACGGA 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 164, 343
XapI RAATTY 1 cut(s) 430
XmiI GTMKAC 2 cut(s) 60, 66
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.