Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002030

Physical Location & Seq

Genomic Coordinates Reverse (-)

2276517 .. 2278598

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G032600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGGACTCCAGAAGCAAAGTATGCTGCCTTTGAGGAGAAGGTCAAACGAACTGTTTACCTCGATAACATCTCACCACATGTCACTGAAACTGTTGTGAGAACTGCTCTTTCACAGTTTGGGACTGTGAAAAATCTTCAGTTCATTCGAAATTACGTGGAATCAAGGAACATCCCGCAAAGTGCACTGGTGGAGATGGAGAACCTTAGACAGGCTGATGTTATTGTCTCAGAGTTAGCTCGATTGCCTTTCATGATGTCGGGGATGCCGAGGCCTGTGAGGGCACGTCGTGCTGAAGTGGAGATGTTTGATGATCGCCATGCAGAGCCTGGAAGAGGGATATCTTGTCGTTGGTTGGAGCCAAATGATCCGGATTTTCAAGTGGCACAAAAACTGAAGCGTCTTACTCGAAAGCATGCTGCTGAAGCGTCATTTGTGCTCGAGCAACAACTCCAGGAAGAAGAGAATCTTGCAAAGCAGCAGAACGAGGCTCTTCAAGCAAATTATAAGAAGTATGACATGTTAGATAGGGTAATAGCTGATGGGACTGTTAAATGTTTGGCAAGTCATTATAATATACGACAAGCAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

199

Amino Acids

22.77

Weight (kDa)

6.46

Isoelectric Point (pI)

65.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05970 AT1G05970
fragaria_vesca	FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g03700 FvH4_4g03700
malus_domestica	MD13G1208600.v1.1 MD16G1210800.v1.1
prunus_persica	Prupe.1G032600_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1
pyrus_communis	pycom13g18070
rosa_chinensis	RchiOBHm_Chr4g0390851 RchiOBHm_Chr4g0390871 RchiOBHm_Chr4g0390901 RchiOBHm_Chr4g0390961 RchiOBHm_Chr4g0393311
rosa_laevigata	RLG00000009765 RLG00000009907
rosa_multiflora	Rmu_sc0000171.1_g000001 Rmu_sc0001590.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336820 Rroxscaffold_5G00338300
rosa_rugosa	Rorug03G0332400 Rorug03G0332500 Rorug04G0001900
rosa_samantha	Rh4AG033900 Rh4AG046600 Rh4BG027600 Rh4BG027900 Rh4BG028300 Rh4BG042200 Rh4CG037300 Rh4CG049700 Rh4DG031200 Rh4DG044000
rosa_wichuraiana	Rw4G002590 Rw4G002630 Rw4G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	507, 573
AccIII	TCCGGA	1 cut(s)	370
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	362
AcuI	CTGAAG	4 cut(s)	122, 315, 416, 444
AdeI	CACNNNGTG	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	211, 335
AflIII	ACRYGT	2 cut(s)	79, 519
AgsI	TTSAA	2 cut(s)	380, 497
AjiI	CACGTC	1 cut(s)	287
AjnI	CCWGG	2 cut(s)	328, 453
AluBI	AGCT	2 cut(s)	239, 539
AluI	AGCT	2 cut(s)	239, 539
Alw21I	GWGCWC	2 cut(s)	187, 441
Alw26I	GTCTC	1 cut(s)	232
Alw44I	GTGCAC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	440
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	1 cut(s)	272
ApaLI	GTGCAC	1 cut(s)	183
ApeKI	GCWGC	3 cut(s)	26, 419, 478
AsuHPI	GGTGA	1 cut(s)	66
AsuII	TTCGAA	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	440
BaeGI	GKGCMC	2 cut(s)	187, 286
Bbv12I	GWGCWC	2 cut(s)	187, 441
BbvI	GCAGC	3 cut(s)	13, 406, 490
BccI	CCATC	2 cut(s)	190, 536
BciT130I	CCWGG	2 cut(s)	330, 455
BcoDI	GTCTC	1 cut(s)	232
BisI	GCNGC	3 cut(s)	27, 420, 479
BlsI	GCNGC	3 cut(s)	28, 421, 480
Bme1390I	CCNGG	2 cut(s)	330, 455
BmeT110I	CYCGRG	1 cut(s)	440
BmgBI	CACGTC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	2 cut(s)	330, 455
BmsI	GCATC	1 cut(s)	255
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BpmI	CTGGAG	1 cut(s)	437
Bpu14I	TTCGAA	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 335
Bse1I	ACTGG	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	370
BseBI	CCWGG	2 cut(s)	330, 455
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	171, 270
BseLI	CCNNNNNNNGG	2 cut(s)	211, 335
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	2 cut(s)	187, 286
BseXI	GCAGC	3 cut(s)	13, 406, 490
BshFI	GGCC	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	187, 441
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	3 cut(s)	19, 136, 559
BslI	CCNNNNNNNGG	2 cut(s)	211, 335
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	3 cut(s)	19, 136, 559
BsnI	GGCC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	440
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	3 cut(s)	187, 286, 441
Bsp13I	TCCGGA	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	313, 367
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	242
BspEI	TCCGGA	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	498
BspT104I	TTCGAA	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	2 cut(s)	313, 367
Bst2UI	CCWGG	2 cut(s)	330, 455
Bst4CI	ACNGT	5 cut(s)	55, 94, 117, 127, 550
Bst6I	CTCTTC	3 cut(s)	328, 456, 498
BstAPI	GCANNNNNTGC	2 cut(s)	23, 290
BstBAI	YACGTR	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	206, 229
BstENI	CCTNNNNNAGG	2 cut(s)	209, 333
BstF5I	GGATG	2 cut(s)	171, 270
BstKTI	GATC	2 cut(s)	316, 370
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	313, 367
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 290, 425, 497
BstNI	CCWGG	2 cut(s)	330, 455
BstNSI	RCATGY	3 cut(s)	83, 419, 523
BstSCI	CCNGG	2 cut(s)	328, 453
BstSLI	GKGCMC	2 cut(s)	187, 286
BstV1I	GCAGC	3 cut(s)	13, 406, 490
BsuRI	GGCC	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	171, 270
BtsIMutI	CAGTG	2 cut(s)	84, 185
Cac8I	GCNNGC	1 cut(s)	417
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	252
CseI	GACGC	2 cut(s)	389, 417
CviAII	CATG	5 cut(s)	80, 253, 320, 416, 520
CviJI	RGCY	7 cut(s)	215, 239, 274, 328, 361, 491, 539
CviKI_1	RGCY	7 cut(s)	215, 239, 274, 328, 361, 491, 539
DdeI	CTNAG	2 cut(s)	206, 229
DpnI	GATC	2 cut(s)	315, 369
DpnII	GATC	2 cut(s)	313, 367
DraIII	CACNNNGTG	1 cut(s)	290
Eam1104I	CTCTTC	3 cut(s)	328, 456, 498
EarI	CTCTTC	3 cut(s)	328, 456, 498
Eco147I	AGGCCT	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	342
Eco57I	CTGAAG	4 cut(s)	122, 315, 416, 444
Eco88I	CYCGRG	1 cut(s)	440
EcoNI	CCTNNNNNAGG	2 cut(s)	209, 333
EcoRII	CCWGG	2 cut(s)	328, 453
EcoRV	GATATC	1 cut(s)	342
FaeI	CATG	5 cut(s)	83, 256, 323, 419, 523
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	3 cut(s)	19, 136, 559
FatI	CATG	5 cut(s)	79, 252, 319, 415, 519
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	27, 420, 479
FokI	GGATG	2 cut(s)	158, 277
Fsp4HI	GCNGC	3 cut(s)	27, 420, 479
GluI	GCNGC	3 cut(s)	27, 420, 479
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	2 cut(s)	389, 417
Hin1II	CATG	5 cut(s)	83, 256, 323, 419, 523
HinfI	GANTC	3 cut(s)	7, 161, 466
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	58, 185
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	11, 253, 371
Hpy8I	GTNNAC	2 cut(s)	58, 185
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	5 cut(s)	55, 94, 117, 127, 550
HpyCH4IV	ACGT	2 cut(s)	156, 286
HpyCH4V	TGCA	3 cut(s)	185, 323, 473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 290, 425, 497
HpyF3I	CTNAG	2 cut(s)	206, 229
HpySE526I	ACGT	2 cut(s)	156, 286
Hsp92II	CATG	5 cut(s)	83, 256, 323, 419, 523
Kpn2I	TCCGGA	1 cut(s)	370
Kzo9I	GATC	2 cut(s)	313, 367
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	9 cut(s)	24, 173, 197, 288, 315, 342, 384, 440, 467
Lsp1109I	GCAGC	3 cut(s)	13, 406, 490
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	2 cut(s)	156, 286
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	315, 369
MboI	GATC	2 cut(s)	313, 367
MboII	GAAGA	5 cut(s)	128, 345, 470, 473, 485
MhlI	GDGCHC	3 cut(s)	187, 286, 441
MluCI	AATT	2 cut(s)	151, 502
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	6 cut(s)	28, 71, 264, 273, 329, 481
MroI	TCCGGA	1 cut(s)	370
MseI	TTAA	1 cut(s)	552
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	330, 455
MvaI	CCWGG	2 cut(s)	330, 455
MwoI	GCNNNNNNNGC	4 cut(s)	23, 290, 425, 497
NdeII	GATC	2 cut(s)	313, 367
NlaIII	CATG	5 cut(s)	83, 256, 323, 419, 523
NlaIV	GGNNCC	1 cut(s)	360
NmeAIII	GCCGAG	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	3 cut(s)	83, 419, 523
NspV	TTCGAA	1 cut(s)	148
PaeI	GCATGC	1 cut(s)	419
PaeR7I	CTCGAG	1 cut(s)	440
PagI	TCATGA	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	274
PciI	ACATGT	2 cut(s)	79, 519
PciSI	GCTCTTC	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	161, 466
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	3 cut(s)	28, 421, 480
Ppu21I	YACGTR	1 cut(s)	157
PscI	ACATGT	2 cut(s)	79, 519
PsiI	TTATAA	2 cut(s)	507, 573
Psp6I	CCWGG	2 cut(s)	328, 453
PspGI	CCWGG	2 cut(s)	328, 453
PspN4I	GGNNCC	1 cut(s)	360
PspXI	VCTCGAGB	1 cut(s)	440
PstNI	CAGNNNCTG	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	3 cut(s)	27, 420, 479
Sau3AI	GATC	2 cut(s)	313, 367
ScrFI	CCNGG	2 cut(s)	330, 455
SduI	GDGCHC	3 cut(s)	187, 286, 441
SetI	ASST	7 cut(s)	45, 63, 159, 207, 241, 289, 541
SfaNI	GCATC	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	440
SfuI	TTCGAA	1 cut(s)	148
SlaI	CTCGAG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	2 cut(s)	151, 502
SseBI	AGGCCT	1 cut(s)	274
SsiI	CCGC	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	274
StyD4I	CCNGG	2 cut(s)	328, 453
TaaI	ACNGT	5 cut(s)	55, 94, 117, 127, 550
TaiI	ACGT	2 cut(s)	159, 289
TaqI	TCGA	5 cut(s)	63, 148, 241, 409, 441
TasI	AATT	2 cut(s)	151, 502
TfiI	GAWTC	2 cut(s)	161, 466
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	2 cut(s)	91, 192
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	26, 419, 478
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	133, 241
TspRI	CASTG	2 cut(s)	91, 192
VneI	GTGCAC	1 cut(s)	183
XagI	CCTNNNNNAGG	2 cut(s)	209, 333
XceI	RCATGY	3 cut(s)	83, 419, 523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.