MD13G1208600.v1.1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0002030
Physical Location & Seq
Reverse (-)
19159589 .. 19161864
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1208600.v1.1.491

Sequence Viewer

Length: 597 bp
ATGGGGACTTCAGAAGCTGAGTATGCTGCATTTGAGGAGAAGGTCAAACGAACTGTTTACCTTGATAACATCTCACCCCAGGTCACCGAATCTGTTATGAGAACTGCACTTTCTCAGTTTGGGAACGTGAAAAGTGTTCAGTTCATTCCAAATTACTTGGAATCAAGGAACATCCCACACTGTGCACTGGTCGAGATGGAAAATCCGAAGCAAGCCAGTGTCATTGTCAAGGAGATAGCGGAATTCCCTTTCATGATTTTGGGGATGCCAAGGCCTGTGAGGGCACGTCCTGCTGTGGCCAACATGTTTGATGAGCGCCCTGCTATGCCTGGAAGACAGATAGAGTGTCATTGGTTGGAGCCAGAAGATCCTAATTTTGAAGTGGCAAAGAAACTGAAGGAACTGCATGGAAGGCATACTGCAGAAGCTGCTTTTTTGCTCAAGAAACAGCTGGAGGAAGAAGAGAAGCTTGCAAAGATGCAAAACGAGACCCTAAAAGCAAATTATAAGAAGTATGAAATGGTAGATAGCGTGATGTCTGATGGAACTGCTCGTCGTTTGGCACGCCGTTATAATATTCGAGTTTCAGACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

199

Amino Acids

22.76

Weight (kDa)

6.47

Isoelectric Point (pI)

63.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 19 - 77 4e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 507, 573
AciI CCGC 1 cut(s) 239
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 416
AdeI CACNNNGTG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 1 cut(s) 380
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 2 cut(s) 78, 328
AluBI AGCT 4 cut(s) 17, 428, 451, 469
AluI AGCT 4 cut(s) 17, 428, 451, 469
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 482
Alw44I GTGCAC 1 cut(s) 183
AlwI GGATC 1 cut(s) 362
AlwNI CAGNNNCTG 2 cut(s) 17, 428
AoxI GGCC 2 cut(s) 272, 297
ApaLI GTGCAC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 26, 428
ApoI RAATTY 1 cut(s) 242
AspLEI GCGC 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 66, 76
BaeGI GKGCMC 2 cut(s) 187, 286
BalI TGGCCA 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 13, 415
BccI CCATC 2 cut(s) 190, 536
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 2 cut(s) 80, 330
BcoDI GTCTC 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 319
BisI GCNGC 2 cut(s) 27, 429
BlsI GCNGC 2 cut(s) 28, 430
Bme1390I CCNGG 2 cut(s) 80, 330
BmgBI CACGTC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 2 cut(s) 80, 330
BmsI GCATC 2 cut(s) 255, 468
BpiI GAAGAC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 78, 269
Bse1I ACTGG 2 cut(s) 192, 216
BseBI CCWGG 2 cut(s) 80, 330
BseDI CCNNGG 2 cut(s) 78, 269
BseGI GGATG 2 cut(s) 171, 270
BseMII CTCAG 2 cut(s) 9, 128
BseNI ACTGG 2 cut(s) 192, 216
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 2 cut(s) 187, 286
BseXI GCAGC 2 cut(s) 13, 415
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 2 cut(s) 274, 299
BsiHKAI GWGCWC 1 cut(s) 187
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 2 cut(s) 274, 299
Bso31I GGTCTC 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 187, 286
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 1 cut(s) 239
BspANI GGCC 2 cut(s) 274, 299
BspCNI CTCAG 2 cut(s) 10, 127
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 360
BspMAI CTGCAG 1 cut(s) 424
BspPI GGATC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 482
BsrI ACTGG 2 cut(s) 192, 216
BssECI CCNNGG 2 cut(s) 78, 269
BssMI GATC 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 2 cut(s) 80, 330
Bst4CI ACNGT 2 cut(s) 55, 182
Bst6I CTCTTC 1 cut(s) 456
BstAPI GCANNNNNTGC 2 cut(s) 290, 428
BstC8I GCNNGC 3 cut(s) 213, 471, 565
BstDEI CTNAG 2 cut(s) 18, 114
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 2 cut(s) 171, 270
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 4 cut(s) 23, 290, 412, 428
BstNI CCWGG 2 cut(s) 80, 330
BstNSI RCATGY 1 cut(s) 307
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 78, 328
BstSFI CTRYAG 1 cut(s) 420
BstSLI GKGCMC 2 cut(s) 187, 286
BstV1I GCAGC 2 cut(s) 13, 415
BstV2I GAAGAC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 2 cut(s) 274, 299
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 2 cut(s) 171, 270
BtsIMutI CAGTG 3 cut(s) 178, 185, 223
Cac8I GCNNGC 3 cut(s) 213, 471, 565
CaiI CAGNNNCTG 2 cut(s) 17, 428
CciI TCATGA 1 cut(s) 252
CfoI GCGC 1 cut(s) 318
CviAII CATG 3 cut(s) 253, 304, 407
CviJI RGCY 8 cut(s) 17, 215, 274, 299, 361, 428, 451, 469
CviKI_1 RGCY 8 cut(s) 17, 215, 274, 299, 361, 428, 451, 469
DdeI CTNAG 2 cut(s) 18, 114
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DraIII CACNNNGTG 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 269
Eco147I AGGCCT 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 482
Eco57I CTGAAG 1 cut(s) 416
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 78, 328
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 3 cut(s) 256, 307, 410
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 1 cut(s) 19
FatI CATG 3 cut(s) 252, 303, 406
Fnu4HI GCNGC 2 cut(s) 27, 429
FokI GGATG 2 cut(s) 158, 277
Fsp4HI GCNGC 2 cut(s) 27, 429
GlaI GCGC 1 cut(s) 317
GluI GCNGC 2 cut(s) 27, 429
GsuI CTGGAG 1 cut(s) 473
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 2 cut(s) 274, 299
HhaI GCGC 1 cut(s) 318
Hin1II CATG 3 cut(s) 256, 307, 410
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 2 cut(s) 89, 161
HphI GGTGA 2 cut(s) 66, 76
Hpy166II GTNNAC 2 cut(s) 58, 185
Hpy188I TCNGA 4 cut(s) 13, 207, 541, 589
Hpy188III TCNNGA 3 cut(s) 193, 253, 442
Hpy8I GTNNAC 2 cut(s) 58, 185
Hpy99I CGWCG 1 cut(s) 558
HpyAV CCTTC 3 cut(s) 34, 391, 405
HpyCH4III ACNGT 2 cut(s) 55, 182
HpyCH4IV ACGT 2 cut(s) 126, 286
HpyCH4V TGCA 7 cut(s) 29, 107, 185, 406, 422, 473, 481
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 290, 412, 428
HpyF3I CTNAG 2 cut(s) 18, 114
HpySE526I ACGT 2 cut(s) 126, 286
Hsp92II CATG 3 cut(s) 256, 307, 410
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 2 cut(s) 13, 415
LweI GCATC 2 cut(s) 255, 468
MaeII ACGT 2 cut(s) 126, 286
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 4 cut(s) 345, 377, 470, 473
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 187, 286
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 4 cut(s) 151, 242, 373, 502
MluNI TGGCCA 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 3 cut(s) 28, 273, 448
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 451
MspR9I CCNGG 2 cut(s) 80, 330
MvaI CCWGG 2 cut(s) 80, 330
MwoI GCNNNNNNNGC 4 cut(s) 23, 290, 412, 428
NdeII GATC 1 cut(s) 367
NlaIII CATG 3 cut(s) 256, 307, 410
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 307
PagI TCATGA 1 cut(s) 252
PceI AGGCCT 1 cut(s) 274
PciI ACATGT 1 cut(s) 303
PfeI GAWTC 2 cut(s) 89, 161
PkrI GCNGC 2 cut(s) 28, 430
PscI ACATGT 1 cut(s) 303
PsiI TTATAA 2 cut(s) 507, 573
Psp6I CCWGG 2 cut(s) 78, 328
PspEI GGTNACC 1 cut(s) 82
PspGI CCWGG 2 cut(s) 78, 328
PspN4I GGNNCC 1 cut(s) 360
PstI CTGCAG 1 cut(s) 424
PstNI CAGNNNCTG 2 cut(s) 17, 428
PsuI RGATCY 1 cut(s) 367
PvuII CAGCTG 1 cut(s) 451
SatI GCNGC 2 cut(s) 27, 429
Sau3AI GATC 1 cut(s) 367
ScrFI CCNGG 2 cut(s) 80, 330
SduI GDGCHC 2 cut(s) 187, 286
SetI ASST 9 cut(s) 19, 45, 63, 84, 129, 289, 430, 453, 471
SfaNI GCATC 2 cut(s) 255, 468
SfcI CTRYAG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 151, 242, 373, 502
SseBI AGGCCT 1 cut(s) 274
SsiI CCGC 1 cut(s) 239
SspI AATATT 1 cut(s) 577
StuI AGGCCT 1 cut(s) 274
StyD4I CCNGG 2 cut(s) 78, 328
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 2 cut(s) 55, 182
TaiI ACGT 2 cut(s) 129, 289
TaqI TCGA 2 cut(s) 192, 580
TasI AATT 4 cut(s) 151, 242, 373, 502
TfiI GAWTC 2 cut(s) 89, 161
TscAI CASTG 3 cut(s) 185, 192, 223
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 26, 428
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 133, 241, 531
TspRI CASTG 3 cut(s) 185, 192, 223
VneI GTGCAC 1 cut(s) 183
XapI RAATTY 1 cut(s) 242
XceI RCATGY 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.