Rh4AG033900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002030
Physical Location & Seq
Reverse (-)
7320601 .. 7323585
2985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG033900.1

Sequence Viewer

Length: 705 bp
ATGACCCGGTTCAGTTTCAGTCTTCTTCCTCCGACATATCGACTCGGTGAGTCAACTCTCACTTCTCTTCTGGGTTCCTCAGAGATTTTTACTTGCTGTTGGAATATGGCTTCAGAAGCAGAGTACTCTGCATTTGAGGAAAAGGTCAGACGAACTGTTTACCTTGATAACCTCTCTCCACAGGTTACTGAACCGGTTGTCAGAAAAGCTATCTCTCAGTTCGGGACAGTTAAAAATGTTCAATTCATTCCAAATTACTTGGAAACAAAGAACATCCCCGTTTCTGCATTGGTGGAGATGGAGAACCCGAGGCAGGCTAATGCCATTGTCTCAGAAATATCTCACAGGCCTTTTATGGTTGGTGGAATTCCAAGGCCTGTGAGGGCACGTGAAGCGAAACCGGAGATGTTTGAGGATCGTCCTGCAAAGCCTGGTAGAAAGATAGAGTTCCGTTGGGTGGAGACAAAGGATCCTGACTTTGAAGTGGCAAATAAATTGAAGCAGCTTGCTAAGGATCATGCTCTTGAAGTTGACATTGCGCTCAATCAACAGTTGGAGGATGAAGAGAAGCTTGCAGAGAGGCAGCAAGGAGCCCTCAAGGCGAATCATGAGAAGTATGAAATGATAAATGGTGTGATAACAGATGGAACTGCTAGGCGTTTGGCACAGCATTATCACATTCCAGTTGCAGATGAATGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

234

Amino Acids

26.68

Weight (kDa)

5.83

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 53 - 116 6e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 423, 464, 477, 522
AcsI RAATTY 1 cut(s) 366
AcuI CTGAAG 1 cut(s) 96
AcvI CACGTG 1 cut(s) 389
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 313, 457
AgeI ACCGGT 1 cut(s) 193
AgsI TTSAA 4 cut(s) 242, 482, 499, 527
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 3 cut(s) 209, 505, 571
AluI AGCT 3 cut(s) 209, 505, 571
Alw26I GTCTC 2 cut(s) 334, 455
AlwI GGATC 4 cut(s) 423, 464, 477, 522
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 2 cut(s) 347, 374
ApeKI GCWGC 2 cut(s) 502, 583
ApoI RAATTY 1 cut(s) 366
AsiGI ACCGGT 1 cut(s) 193
AspLEI GCGC 1 cut(s) 541
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 388
BamHI GGATCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 595
BbrPI CACGTG 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 514, 595
BccI CCATC 2 cut(s) 292, 638
BciT130I CCWGG 1 cut(s) 432
BcnI CCSGG 1 cut(s) 7
BcoDI GTCTC 2 cut(s) 334, 455
BfaI CTAG 1 cut(s) 654
BglI GCCNNNNNGGC 1 cut(s) 599
BisI GCNGC 2 cut(s) 503, 584
BlsI GCNGC 2 cut(s) 504, 585
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 2 cut(s) 7, 432
BmeT110I CYCGRG 1 cut(s) 307
BmiI GGNNCC 3 cut(s) 76, 471, 592
BmrFI CCNGG 2 cut(s) 7, 432
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 308, 371
BsaWI WCCGGW 2 cut(s) 193, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 457
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 683
Bse3DI GCAATG 1 cut(s) 534
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 308, 371
BseGI GGATG 2 cut(s) 273, 565
BseLI CCNNNNNNNGG 2 cut(s) 313, 457
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 3 cut(s) 93, 230, 345
BseNI ACTGG 1 cut(s) 683
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 2 cut(s) 514, 595
BshFI GGCC 2 cut(s) 349, 376
BshTI ACCGGT 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 307
BsiSI CCGG 3 cut(s) 7, 194, 401
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 313, 457
BsmAI GTCTC 2 cut(s) 334, 455
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 2 cut(s) 349, 376
BsoBI CYCGRG 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 388, 595
Bsp143I GATC 3 cut(s) 415, 469, 514
BspANI GGCC 2 cut(s) 349, 376
BspCNI CTCAG 3 cut(s) 92, 229, 344
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 3 cut(s) 76, 471, 592
BspPI GGATC 4 cut(s) 423, 464, 477, 522
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 1 cut(s) 193
BsrI ACTGG 1 cut(s) 683
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 308, 371
BssMI GATC 3 cut(s) 415, 469, 514
BssT1I CCWWGG 1 cut(s) 371
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 3 cut(s) 157, 229, 552
Bst6I CTCTTC 2 cut(s) 72, 558
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 315, 507, 573
BstDEI CTNAG 4 cut(s) 79, 216, 331, 510
BstF5I GGATG 2 cut(s) 273, 565
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 3 cut(s) 418, 472, 517
BstMAI GTCTC 2 cut(s) 334, 455
BstMBI GATC 3 cut(s) 415, 469, 514
BstMWI GCNNNNNNNGC 3 cut(s) 116, 392, 599
BstNI CCWGG 1 cut(s) 432
BstSCI CCNGG 2 cut(s) 5, 430
BstSLI GKGCMC 1 cut(s) 388
BstV1I GCAGC 2 cut(s) 514, 595
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 2 cut(s) 349, 376
BtsCI GGATG 2 cut(s) 273, 565
Cac8I GCNNGC 3 cut(s) 315, 507, 573
CciI TCATGA 1 cut(s) 607
CfoI GCGC 1 cut(s) 541
Cfr10I RCCGGY 1 cut(s) 193
Csp6I GTAC 1 cut(s) 124
CspAI ACCGGT 1 cut(s) 193
CviAII CATG 2 cut(s) 518, 608
CviJI RGCY 9 cut(s) 110, 209, 317, 349, 376, 430, 505, 571, 593
CviKI_1 RGCY 9 cut(s) 110, 209, 317, 349, 376, 430, 505, 571, 593
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 4 cut(s) 79, 216, 331, 510
DpnI GATC 3 cut(s) 417, 471, 516
DpnII GATC 3 cut(s) 415, 469, 514
Eam1104I CTCTTC 2 cut(s) 72, 558
EarI CTCTTC 2 cut(s) 72, 558
Eco130I CCWWGG 1 cut(s) 371
Eco147I AGGCCT 2 cut(s) 349, 376
Eco24I GRGCYC 1 cut(s) 595
Eco57I CTGAAG 1 cut(s) 96
Eco72I CACGTG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 2 cut(s) 521, 611
FaiI YATR 6 cut(s) 37, 107, 356, 519, 609, 618
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FaqI GGGAC 1 cut(s) 238
FatI CATG 2 cut(s) 517, 607
Fnu4HI GCNGC 2 cut(s) 503, 584
FokI GGATG 2 cut(s) 260, 572
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 2 cut(s) 503, 584
FspBI CTAG 1 cut(s) 654
GlaI GCGC 1 cut(s) 540
GluI GCNGC 2 cut(s) 503, 584
HaeIII GGCC 2 cut(s) 349, 376
HapII CCGG 3 cut(s) 7, 194, 401
HhaI GCGC 1 cut(s) 541
Hin1II CATG 2 cut(s) 521, 611
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HincII GTYRAC 2 cut(s) 54, 532
HindII GTYRAC 2 cut(s) 54, 532
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 3 cut(s) 42, 50, 604
HpaII CCGG 3 cut(s) 7, 194, 401
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 3 cut(s) 54, 160, 532
Hpy188I TCNGA 7 cut(s) 33, 82, 115, 149, 203, 334, 704
Hpy188III TCNNGA 4 cut(s) 223, 473, 524, 608
Hpy8I GTNNAC 3 cut(s) 54, 160, 532
HpyCH4III ACNGT 3 cut(s) 157, 229, 552
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 5 cut(s) 131, 287, 425, 575, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 392, 599
HpyF3I CTNAG 4 cut(s) 79, 216, 331, 510
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 2 cut(s) 521, 611
HspAI GCGC 1 cut(s) 539
Kzo9I GATC 3 cut(s) 415, 469, 514
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 2 cut(s) 514, 595
MaeI CTAG 1 cut(s) 654
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 1 cut(s) 184
MalI GATC 3 cut(s) 417, 471, 516
MboI GATC 3 cut(s) 415, 469, 514
MboII GAAGA 4 cut(s) 14, 17, 59, 575
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 388, 595
MluCI AATT 4 cut(s) 242, 253, 366, 494
MlyI GAGTC 2 cut(s) 36, 59
MmeI TCCRAC 3 cut(s) 56, 80, 534
MseI TTAA 1 cut(s) 231
MspI CCGG 3 cut(s) 7, 194, 401
MspR9I CCNGG 2 cut(s) 7, 432
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 3 cut(s) 116, 392, 599
NciI CCSGG 1 cut(s) 7
NdeII GATC 3 cut(s) 415, 469, 514
NlaIII CATG 2 cut(s) 521, 611
NlaIV GGNNCC 3 cut(s) 76, 471, 592
PagI TCATGA 1 cut(s) 607
PceI AGGCCT 2 cut(s) 349, 376
PfeI GAWTC 1 cut(s) 604
PinAI ACCGGT 1 cut(s) 193
PkrI GCNGC 2 cut(s) 504, 585
PleI GAGTC 2 cut(s) 36, 58
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
PpsI GAGTC 2 cut(s) 36, 58
Ppu21I YACGTR 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 430
PspCI CACGTG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 3 cut(s) 76, 471, 592
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 2 cut(s) 503, 584
Sau3AI GATC 3 cut(s) 415, 469, 514
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 2 cut(s) 36, 59
ScrFI CCNGG 2 cut(s) 7, 432
SduI GDGCHC 2 cut(s) 388, 595
SetI ASST 8 cut(s) 147, 165, 174, 186, 211, 391, 507, 573
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 4 cut(s) 242, 253, 366, 494
SseBI AGGCCT 2 cut(s) 349, 376
SspMI CTAG 1 cut(s) 654
StuI AGGCCT 2 cut(s) 349, 376
StyD4I CCNGG 2 cut(s) 5, 430
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 3 cut(s) 157, 229, 552
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 40
TasI AATT 4 cut(s) 242, 253, 366, 494
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 604
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseI GCWGC 2 cut(s) 502, 583
TspDTI ATGAA 3 cut(s) 235, 576, 633
TspGWI ACGGA 1 cut(s) 440
XapI RAATTY 1 cut(s) 366
XspI CTAG 1 cut(s) 654
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.