Rroxscaffold_5G00336820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002030
Physical Location & Seq
Reverse (-)
4661076 .. 4664155
3080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336820.1

Sequence Viewer

Length: 717 bp
ATGAAAAGCTTAGAATTAGACCCGGTTCAGTTCAGTCTTCTTCCTCTGACACATCGACTCGGTGAGTCAACTTTCACTTCTCTTCTGGGTTCCTCAGAGATTTTTACTTGCTGTTGGAATATGGCTTCAGAAGCAGAGTACTCTGCATTTGAGGAAAAGGTCAGACGAACTGTTTACCTTGATAACCTCTCTCCACAGGTTACTGAACCGGTTGTCAGAAAAGCTATCTCTCAGTTCGGGACAGTTATAAATGTTCAATTCATTCCAAATTACTTGGAAACAAAGAACATCCCCGTTTCTGCATTGGTGGAGATGGAGAACCCGAGGCAGGCTAATGCCATTGTCTCAGAAATATCTCACAGGCCTTTTATGGTTGGTGGAATTCCAAGGCCTGTGAGGGCACGTGAAGCGAAACCGGAGATGTTTGAGGATCGTCCTGCAAAGCCTGGTAGAAAGATAGAGTTCCGTTGGGTGGAGACAAAGGATCCTGACTTTGAAGTGGCAAATAAATTGAAGCAGCTTGCTAAGGATCATGCTCTTGAAGTTGACATTGCGCTCAATCAACAGTTGGAGGATGAAGAGAAGCTTGCAGAGAGGCAGCAAGGAGCCCTCAAGGCGAATCATGAGAAGTATGAAATGATAAATGGTGTGATAACAGATGGAACTGCTAGGCGTTTGGCACAGCATTATCACATTCCAGTTGCAGACGAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

238

Amino Acids

27.14

Weight (kDa)

5.49

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 58 - 121 1.8e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AclWI GGATC 4 cut(s) 438, 479, 492, 537
AcsI RAATTY 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 111
AcvI CACGTG 1 cut(s) 404
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 328, 472
AgeI ACCGGT 1 cut(s) 208
AgsI TTSAA 4 cut(s) 257, 497, 514, 542
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 4 cut(s) 9, 224, 520, 586
AluI AGCT 4 cut(s) 9, 224, 520, 586
Alw26I GTCTC 2 cut(s) 349, 470
AlwI GGATC 4 cut(s) 438, 479, 492, 537
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 2 cut(s) 362, 389
ApeKI GCWGC 2 cut(s) 517, 598
ApoI RAATTY 1 cut(s) 381
AsiGI ACCGGT 1 cut(s) 208
AspLEI GCGC 1 cut(s) 556
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 403
BamHI GGATCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 610
BbrPI CACGTG 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 529, 610
BccI CCATC 2 cut(s) 307, 653
BciT130I CCWGG 1 cut(s) 447
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 349, 470
BfaI CTAG 1 cut(s) 669
BglI GCCNNNNNGGC 1 cut(s) 614
BisI GCNGC 2 cut(s) 518, 599
BlsI GCNGC 2 cut(s) 519, 600
BmcAI AGTACT 1 cut(s) 140
Bme1390I CCNGG 2 cut(s) 23, 447
BmeT110I CYCGRG 1 cut(s) 322
BmiI GGNNCC 3 cut(s) 91, 486, 607
BmrFI CCNGG 2 cut(s) 23, 447
BpiI GAAGAC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 323, 386
BsaWI WCCGGW 2 cut(s) 208, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 472
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 698
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 2 cut(s) 323, 386
BseGI GGATG 2 cut(s) 288, 580
BseLI CCNNNNNNNGG 2 cut(s) 328, 472
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 3 cut(s) 108, 245, 360
BseNI ACTGG 1 cut(s) 698
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 2 cut(s) 529, 610
BshFI GGCC 2 cut(s) 364, 391
BshTI ACCGGT 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 3 cut(s) 23, 209, 416
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 328, 472
BsmAI GTCTC 2 cut(s) 349, 470
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 2 cut(s) 364, 391
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 403, 610
Bsp143I GATC 3 cut(s) 430, 484, 529
BspANI GGCC 2 cut(s) 364, 391
BspCNI CTCAG 3 cut(s) 107, 244, 359
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 3 cut(s) 91, 486, 607
BspPI GGATC 4 cut(s) 438, 479, 492, 537
BsrDI GCAATG 1 cut(s) 549
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 1 cut(s) 698
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 323, 386
BssMI GATC 3 cut(s) 430, 484, 529
BssT1I CCWWGG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 172, 244, 567
Bst6I CTCTTC 2 cut(s) 87, 573
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 3 cut(s) 330, 522, 588
BstDEI CTNAG 5 cut(s) 10, 94, 231, 346, 525
BstF5I GGATG 2 cut(s) 288, 580
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 3 cut(s) 433, 487, 532
BstMAI GTCTC 2 cut(s) 349, 470
BstMBI GATC 3 cut(s) 430, 484, 529
BstMWI GCNNNNNNNGC 3 cut(s) 131, 407, 614
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 2 cut(s) 21, 445
BstSLI GKGCMC 1 cut(s) 403
BstV1I GCAGC 2 cut(s) 529, 610
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 2 cut(s) 364, 391
BtsCI GGATG 2 cut(s) 288, 580
Cac8I GCNNGC 3 cut(s) 330, 522, 588
CciI TCATGA 1 cut(s) 622
CfoI GCGC 1 cut(s) 556
Cfr10I RCCGGY 1 cut(s) 208
Csp6I GTAC 1 cut(s) 139
CspAI ACCGGT 1 cut(s) 208
CviAII CATG 2 cut(s) 533, 623
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 5 cut(s) 10, 94, 231, 346, 525
DpnI GATC 3 cut(s) 432, 486, 531
DpnII GATC 3 cut(s) 430, 484, 529
Eam1104I CTCTTC 2 cut(s) 87, 573
EarI CTCTTC 2 cut(s) 87, 573
Eco130I CCWWGG 1 cut(s) 386
Eco147I AGGCCT 2 cut(s) 364, 391
Eco24I GRGCYC 1 cut(s) 610
Eco57I CTGAAG 1 cut(s) 111
Eco72I CACGTG 1 cut(s) 404
Eco88I CYCGRG 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 2 cut(s) 536, 626
FaiI YATR 6 cut(s) 122, 248, 371, 534, 624, 633
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 532, 622
Fnu4HI GCNGC 2 cut(s) 518, 599
FokI GGATG 2 cut(s) 275, 587
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 2 cut(s) 518, 599
FspBI CTAG 1 cut(s) 669
GlaI GCGC 1 cut(s) 555
GluI GCNGC 2 cut(s) 518, 599
HaeIII GGCC 2 cut(s) 364, 391
HapII CCGG 3 cut(s) 23, 209, 416
HhaI GCGC 1 cut(s) 556
Hin1II CATG 2 cut(s) 536, 626
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HincII GTYRAC 2 cut(s) 69, 547
HindII GTYRAC 2 cut(s) 69, 547
HindIII AAGCTT 2 cut(s) 7, 584
HinfI GANTC 3 cut(s) 57, 65, 619
HpaII CCGG 3 cut(s) 23, 209, 416
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 3 cut(s) 69, 175, 547
Hpy188I TCNGA 6 cut(s) 48, 97, 130, 164, 218, 349
Hpy188III TCNNGA 4 cut(s) 238, 488, 539, 623
Hpy8I GTNNAC 3 cut(s) 69, 175, 547
HpyCH4III ACNGT 3 cut(s) 172, 244, 567
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 5 cut(s) 146, 302, 440, 590, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 407, 614
HpyF3I CTNAG 5 cut(s) 10, 94, 231, 346, 525
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 2 cut(s) 536, 626
HspAI GCGC 1 cut(s) 554
Kzo9I GATC 3 cut(s) 430, 484, 529
LmnI GCTCC 1 cut(s) 605
Lsp1109I GCAGC 2 cut(s) 529, 610
MaeI CTAG 1 cut(s) 669
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 432, 486, 531
MboI GATC 3 cut(s) 430, 484, 529
MboII GAAGA 4 cut(s) 29, 32, 74, 590
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 2 cut(s) 403, 610
MluCI AATT 5 cut(s) 14, 257, 268, 381, 509
MlyI GAGTC 2 cut(s) 51, 74
MmeI TCCRAC 2 cut(s) 95, 549
MspI CCGG 3 cut(s) 23, 209, 416
MspR9I CCNGG 2 cut(s) 23, 447
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 3 cut(s) 131, 407, 614
NciI CCSGG 1 cut(s) 23
NdeII GATC 3 cut(s) 430, 484, 529
NlaIII CATG 2 cut(s) 536, 626
NlaIV GGNNCC 3 cut(s) 91, 486, 607
PagI TCATGA 1 cut(s) 622
PceI AGGCCT 2 cut(s) 364, 391
PfeI GAWTC 1 cut(s) 619
PinAI ACCGGT 1 cut(s) 208
PkrI GCNGC 2 cut(s) 519, 600
PleI GAGTC 2 cut(s) 51, 73
PmaCI CACGTG 1 cut(s) 404
PmlI CACGTG 1 cut(s) 404
PpsI GAGTC 2 cut(s) 51, 73
Ppu21I YACGTR 1 cut(s) 404
PsiI TTATAA 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 445
PspCI CACGTG 1 cut(s) 404
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 3 cut(s) 91, 486, 607
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SatI GCNGC 2 cut(s) 518, 599
Sau3AI GATC 3 cut(s) 430, 484, 529
ScaI AGTACT 1 cut(s) 140
SchI GAGTC 2 cut(s) 51, 74
ScrFI CCNGG 2 cut(s) 23, 447
SduI GDGCHC 2 cut(s) 403, 610
SetI ASST 9 cut(s) 11, 162, 180, 189, 201, 226, 406, 522, 588
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
Sse9I AATT 5 cut(s) 14, 257, 268, 381, 509
SseBI AGGCCT 2 cut(s) 364, 391
SspMI CTAG 1 cut(s) 669
StuI AGGCCT 2 cut(s) 364, 391
StyD4I CCNGG 2 cut(s) 21, 445
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 3 cut(s) 172, 244, 567
TaiI ACGT 1 cut(s) 406
TaqI TCGA 1 cut(s) 55
TasI AATT 5 cut(s) 14, 257, 268, 381, 509
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 1 cut(s) 619
TseI GCWGC 2 cut(s) 517, 598
TspDTI ATGAA 4 cut(s) 17, 250, 591, 648
TspGWI ACGGA 1 cut(s) 455
XapI RAATTY 1 cut(s) 381
XspI CTAG 1 cut(s) 669
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.