Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002030

Physical Location & Seq

Genomic Coordinates Forward (+)

3271578 .. 3273509

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03700.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGACTTCAGAAGCACAGTATGCTGAATTTGAGGAGAAGATCAAAAGAACTGTTTACCTTGACAACCTCTCACCACAGGTCAATGAATCGATTGTGACACAAGCTCTGGATCAGTTTGGGAATGTGAAAAGTGTTCGGTTTATTCCAAATTACCTGGAATCAAAGAACATCCCCCAGTGTGCATTGATTGAGATGGAGAACCAAACACAGGTCAATGCGGTTATCTCAGATATAACGCAGAAGCCTTTCATGATTGGGGGGATGCCAAGGCCTGTGAGGGCACGTAAGGCTAAAATGGAGATGTTTGATGATCGTCCTGTAAAGCCTGGTAGAACGATACAGTGCCGTTGGGTGGAGCCAAATGATCCTGATTTTGAGGTGGCAAAGAAACTGAAGGAGCTTGCTAAAATTCATGCTGTGGAAGCTGAATATGTACTCAAGAAACAACTGGAGGATGAAGAGAAACTTGAAAAGCAGCACGAAGAATCCCTCAAAGCAGCACATAAGAAGTATAAAATGGTAGATAGTGTCATAGCTGATGGAACTATAAGGCAATTGTCTCGAGGTTACCATCTTAATGTTGGAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

199

Amino Acids

22.79

Weight (kDa)

5.91

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05970 AT1G05970
fragaria_vesca	FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g03700 FvH4_4g03700
malus_domestica	MD13G1208600.v1.1 MD16G1210800.v1.1
prunus_persica	Prupe.1G032600_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1
pyrus_communis	pycom13g18070
rosa_chinensis	RchiOBHm_Chr4g0390851 RchiOBHm_Chr4g0390871 RchiOBHm_Chr4g0390901 RchiOBHm_Chr4g0390961 RchiOBHm_Chr4g0393311
rosa_laevigata	RLG00000009765 RLG00000009907
rosa_multiflora	Rmu_sc0000171.1_g000001 Rmu_sc0001590.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336820 Rroxscaffold_5G00338300
rosa_rugosa	Rorug03G0332400 Rorug03G0332500 Rorug04G0001900
rosa_samantha	Rh4AG033900 Rh4AG046600 Rh4BG027600 Rh4BG027900 Rh4BG028300 Rh4BG042200 Rh4CG037300 Rh4CG049700 Rh4DG031200 Rh4DG044000
rosa_wichuraiana	Rw4G002590 Rw4G002630 Rw4G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	2 cut(s)	120, 362
AcsI	RAATTY	2 cut(s)	29, 411
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	2 cut(s)	211, 355
AgsI	TTSAA	1 cut(s)	473
AjnI	CCWGG	2 cut(s)	156, 328
AluBI	AGCT	4 cut(s)	107, 403, 428, 539
AluI	AGCT	4 cut(s)	107, 403, 428, 539
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	2 cut(s)	120, 362
Ama87I	CYCGRG	1 cut(s)	564
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	478, 500
ApoI	RAATTY	2 cut(s)	29, 411
Asp700I	GAANNNNTTC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	66
AvaI	CYCGRG	1 cut(s)	564
BaeGI	GKGCMC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	490, 512
BccI	CCATC	3 cut(s)	190, 536, 582
BceAI	ACGGC	1 cut(s)	333
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	2 cut(s)	158, 330
BcoDI	GTCTC	1 cut(s)	567
BisI	GCNGC	2 cut(s)	479, 501
BlsI	GCNGC	2 cut(s)	480, 502
Bme1390I	CCNGG	2 cut(s)	158, 330
BmeT110I	CYCGRG	1 cut(s)	564
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	2 cut(s)	158, 330
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	92
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 355
Bse1I	ACTGG	2 cut(s)	178, 456
BseBI	CCWGG	2 cut(s)	158, 330
BseCI	ATCGAT	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	3 cut(s)	171, 270, 463
BseLI	CCNNNNNNNGG	2 cut(s)	211, 355
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	2 cut(s)	178, 456
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	490, 512
BshFI	GGCC	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	211, 355
BsmAI	GTCTC	1 cut(s)	567
BsnI	GGCC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	4 cut(s)	42, 112, 313, 367
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	242
BspDI	ATCGAT	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	2 cut(s)	120, 362
BsrI	ACTGG	2 cut(s)	178, 456
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	4 cut(s)	42, 112, 313, 367
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	2 cut(s)	158, 330
Bst4CI	ACNGT	3 cut(s)	21, 55, 345
Bst6I	CTCTTC	1 cut(s)	456
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	229
BstEII	GGTNACC	1 cut(s)	569
BstF5I	GGATG	3 cut(s)	171, 270, 463
BstKTI	GATC	4 cut(s)	45, 115, 316, 370
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	4 cut(s)	42, 112, 313, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 290, 425
BstNI	CCWGG	2 cut(s)	158, 330
BstPI	GGTNACC	1 cut(s)	569
BstSCI	CCNGG	2 cut(s)	156, 328
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	2 cut(s)	490, 512
Bsu15I	ATCGAT	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	274
BsuTUI	ATCGAT	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	171, 270, 463
BtsIMutI	CAGTG	2 cut(s)	185, 350
Cac8I	GCNNGC	1 cut(s)	405
CciI	TCATGA	1 cut(s)	252
ClaI	ATCGAT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	2 cut(s)	253, 416
CviJI	RGCY	9 cut(s)	107, 247, 274, 293, 328, 361, 403, 428, 539
CviKI_1	RGCY	9 cut(s)	107, 247, 274, 293, 328, 361, 403, 428, 539
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	4 cut(s)	44, 114, 315, 369
DpnII	GATC	4 cut(s)	42, 112, 313, 367
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	564
Eco91I	GGTNACC	1 cut(s)	569
EcoO65I	GGTNACC	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	156, 328
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	2 cut(s)	256, 419
FaiI	YATR	9 cut(s)	24, 236, 254, 417, 435, 507, 516, 536, 551
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FatI	CATG	2 cut(s)	252, 415
Fnu4HI	GCNGC	2 cut(s)	479, 501
FokI	GGATG	3 cut(s)	158, 277, 470
Fsp4HI	GCNGC	2 cut(s)	479, 501
GluI	GCNGC	2 cut(s)	479, 501
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	256, 419
HinfI	GANTC	3 cut(s)	89, 161, 488
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	13, 232
Hpy188III	TCNNGA	5 cut(s)	110, 253, 371, 442, 564
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	3 cut(s)	21, 55, 345
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 290, 425
HpyF3I	CTNAG	1 cut(s)	229
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	2 cut(s)	256, 419
Kzo9I	GATC	4 cut(s)	42, 112, 313, 367
LmnI	GCTCC	2 cut(s)	358, 400
Lsp1109I	GCAGC	2 cut(s)	490, 512
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	2 cut(s)	97, 569
MalI	GATC	4 cut(s)	44, 114, 315, 369
MboI	GATC	4 cut(s)	42, 112, 313, 367
MboII	GAAGA	3 cut(s)	52, 473, 497
MfeI	CAATTG	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	4 cut(s)	29, 151, 411, 557
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	7 cut(s)	28, 80, 273, 373, 448, 503, 560
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	579
MspR9I	CCNGG	2 cut(s)	158, 330
MunI	CAATTG	1 cut(s)	557
MvaI	CCWGG	2 cut(s)	158, 330
MwoI	GCNNNNNNNGC	3 cut(s)	23, 290, 425
NdeII	GATC	4 cut(s)	42, 112, 313, 367
NlaIII	CATG	2 cut(s)	256, 419
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	564
PagI	TCATGA	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	3 cut(s)	89, 161, 488
PkrI	GCNGC	2 cut(s)	480, 502
Ppu21I	YACGTR	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	156, 328
PspEI	GGTNACC	1 cut(s)	569
PspGI	CCWGG	2 cut(s)	156, 328
PspN4I	GGNNCC	1 cut(s)	360
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	2 cut(s)	479, 501
Sau3AI	GATC	4 cut(s)	42, 112, 313, 367
ScrFI	CCNGG	2 cut(s)	158, 330
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	564
SlaI	CTCGAG	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	2 cut(s)	440, 564
SmoI	CTYRAG	2 cut(s)	440, 564
Sse9I	AATT	4 cut(s)	29, 151, 411, 557
SseBI	AGGCCT	1 cut(s)	274
SsiI	CCGC	1 cut(s)	221
StuI	AGGCCT	1 cut(s)	274
StyD4I	CCNGG	2 cut(s)	156, 328
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	3 cut(s)	21, 55, 345
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	92, 565
TasI	AATT	4 cut(s)	29, 151, 411, 557
TatI	WGTACW	1 cut(s)	436
TfiI	GAWTC	3 cut(s)	89, 161, 488
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	2 cut(s)	185, 350
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	2 cut(s)	478, 500
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	4 cut(s)	102, 241, 404, 474
TspRI	CASTG	2 cut(s)	185, 350
XapI	RAATTY	2 cut(s)	29, 411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XhoI	CTCGAG	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.