RchiOBHm_Chr4g0390961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002030
Physical Location & Seq
Reverse (-)
6221451 .. 6224558
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36388

Sequence Viewer

Length: 600 bp
ATGGCTTCAGAAGCAGAGTACTCTGCATTTGAGGAAAAGGTCAGACGAACTGTTTACCTTGATAACCTCTCTCCACAGGTTACTGAACCGGTTGTCAGAAAAGCTATCTCTCAGTTCGGGACAGTTAAAAATGTTCAATTCATTCCAAATTACTTGGAAACAAAGAACATCCCCGTTTCTGCGTTGGTGGAGATGGAGAACCCGAGGCAGGCTAATGCCATTGTCTCAGAAATATCTCACAGGCCTTTTATGGTTGGTGGAATTCCAAGGCCTGTGAGGGCACGTGAAGCGAAACCGGAGATGTTTGAGGATCGTCCTGCAAAGCCTGGTAGAAAGATAGAGTTCCGTTGGGTGGAGACAAAGGATCCTGACTTTGAAGTGGCAAATAAATTGAAGCAGCTTGCTAAGGATCATGCTCTTGAAGTTGACATTGCGCTCAATCAACAGTTGGAGGATGAAGAGAAGCTTGCAGAGAGGCAGCAAGGAGCCCTCAAGGCGAATCATGAGAAGTATGAAATGATAAATAGTGTGATAACAGATGGAACTGCTAGGCGTTTGGCACAGCATTATCACATTCCAGTTGCAGATGAATGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

199

Amino Acids

22.77

Weight (kDa)

5.82

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 18 - 81 4.4e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 318, 359, 372, 417
AcsI RAATTY 1 cut(s) 261
AcvI CACGTG 1 cut(s) 284
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 208, 352
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 4 cut(s) 137, 377, 394, 422
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 3 cut(s) 104, 400, 466
AluI AGCT 3 cut(s) 104, 400, 466
Alw26I GTCTC 2 cut(s) 229, 350
AlwI GGATC 4 cut(s) 318, 359, 372, 417
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 2 cut(s) 242, 269
ApeKI GCWGC 2 cut(s) 397, 478
ApoI RAATTY 1 cut(s) 261
AsiGI ACCGGT 1 cut(s) 88
AspLEI GCGC 1 cut(s) 436
AvaI CYCGRG 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 283
BamHI GGATCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 490
BbrPI CACGTG 1 cut(s) 284
BbvI GCAGC 2 cut(s) 409, 490
BccI CCATC 2 cut(s) 187, 533
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 229, 350
BfaI CTAG 1 cut(s) 549
BglI GCCNNNNNGGC 1 cut(s) 494
BisI GCNGC 2 cut(s) 398, 479
BlsI GCNGC 2 cut(s) 399, 480
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 202
BmiI GGNNCC 2 cut(s) 366, 487
BmrFI CCNGG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 476
BsaAI YACGTR 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 203, 266
BsaWI WCCGGW 2 cut(s) 88, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 352
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 578
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 203, 266
BseGI GGATG 2 cut(s) 168, 460
BseLI CCNNNNNNNGG 2 cut(s) 208, 352
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 2 cut(s) 125, 240
BseNI ACTGG 1 cut(s) 578
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 2 cut(s) 409, 490
BshFI GGCC 2 cut(s) 244, 271
BshTI ACCGGT 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 2 cut(s) 89, 296
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 208, 352
BsmAI GTCTC 2 cut(s) 229, 350
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 244, 271
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 283, 490
Bsp143I GATC 3 cut(s) 310, 364, 409
BspANI GGCC 2 cut(s) 244, 271
BspCNI CTCAG 2 cut(s) 124, 239
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 366, 487
BspPI GGATC 4 cut(s) 318, 359, 372, 417
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 578
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 203, 266
BssMI GATC 3 cut(s) 310, 364, 409
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 3 cut(s) 52, 124, 447
Bst6I CTCTTC 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 284
BstC8I GCNNGC 3 cut(s) 210, 402, 468
BstDEI CTNAG 3 cut(s) 111, 226, 405
BstF5I GGATG 2 cut(s) 168, 460
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 3 cut(s) 313, 367, 412
BstMAI GTCTC 2 cut(s) 229, 350
BstMBI GATC 3 cut(s) 310, 364, 409
BstMWI GCNNNNNNNGC 3 cut(s) 11, 287, 494
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 2 cut(s) 409, 490
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 2 cut(s) 244, 271
BtsCI GGATG 2 cut(s) 168, 460
Cac8I GCNNGC 3 cut(s) 210, 402, 468
CciI TCATGA 1 cut(s) 502
CfoI GCGC 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 88
Csp6I GTAC 1 cut(s) 19
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 2 cut(s) 413, 503
CviJI RGCY 9 cut(s) 5, 104, 212, 244, 271, 325, 400, 466, 488
CviKI_1 RGCY 9 cut(s) 5, 104, 212, 244, 271, 325, 400, 466, 488
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 3 cut(s) 111, 226, 405
DpnI GATC 3 cut(s) 312, 366, 411
DpnII GATC 3 cut(s) 310, 364, 409
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 266
Eco147I AGGCCT 2 cut(s) 244, 271
Eco24I GRGCYC 1 cut(s) 490
Eco72I CACGTG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 2 cut(s) 416, 506
FaiI YATR 4 cut(s) 251, 414, 504, 513
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 412, 502
Fnu4HI GCNGC 2 cut(s) 398, 479
FokI GGATG 2 cut(s) 155, 467
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 2 cut(s) 398, 479
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 435
GluI GCNGC 2 cut(s) 398, 479
HaeIII GGCC 2 cut(s) 244, 271
HapII CCGG 2 cut(s) 89, 296
HhaI GCGC 1 cut(s) 436
Hin1II CATG 2 cut(s) 416, 506
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 1 cut(s) 499
HpaII CCGG 2 cut(s) 89, 296
Hpy166II GTNNAC 2 cut(s) 55, 427
Hpy188I TCNGA 5 cut(s) 10, 44, 98, 229, 599
Hpy188III TCNNGA 4 cut(s) 118, 368, 419, 503
Hpy8I GTNNAC 2 cut(s) 55, 427
HpyCH4III ACNGT 3 cut(s) 52, 124, 447
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 4 cut(s) 26, 320, 470, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 287, 494
HpyF3I CTNAG 3 cut(s) 111, 226, 405
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 2 cut(s) 416, 506
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 3 cut(s) 310, 364, 409
LmnI GCTCC 1 cut(s) 485
Lsp1109I GCAGC 2 cut(s) 409, 490
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 312, 366, 411
MboI GATC 3 cut(s) 310, 364, 409
MboII GAAGA 1 cut(s) 470
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 283, 490
MluCI AATT 4 cut(s) 137, 148, 261, 389
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 8 cut(s) 25, 77, 198, 270, 301, 445, 468, 500
MseI TTAA 1 cut(s) 126
MspI CCGG 2 cut(s) 89, 296
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 11, 287, 494
NdeII GATC 3 cut(s) 310, 364, 409
NlaIII CATG 2 cut(s) 416, 506
NlaIV GGNNCC 2 cut(s) 366, 487
PagI TCATGA 1 cut(s) 502
PceI AGGCCT 2 cut(s) 244, 271
PfeI GAWTC 1 cut(s) 499
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 399, 480
PmaCI CACGTG 1 cut(s) 284
PmlI CACGTG 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 325
PspCI CACGTG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 366, 487
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 398, 479
Sau3AI GATC 3 cut(s) 310, 364, 409
ScaI AGTACT 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 283, 490
SetI ASST 8 cut(s) 42, 60, 69, 81, 106, 286, 402, 468
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 4 cut(s) 137, 148, 261, 389
SseBI AGGCCT 2 cut(s) 244, 271
SspMI CTAG 1 cut(s) 549
StuI AGGCCT 2 cut(s) 244, 271
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 3 cut(s) 52, 124, 447
TaiI ACGT 1 cut(s) 286
TasI AATT 4 cut(s) 137, 148, 261, 389
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 2 cut(s) 397, 478
TspDTI ATGAA 3 cut(s) 130, 471, 528
TspGWI ACGGA 1 cut(s) 335
XapI RAATTY 1 cut(s) 261
XspI CTAG 1 cut(s) 549
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.