Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002030

Physical Location & Seq

Genomic Coordinates Reverse (-)

2567840 .. 2570619

Gene Structure 2780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02890.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTTCAGAAGCAGAGTACTCTGAATTTGAGGAAAAGGTCAAACGAACTGTTTACCTTGATAATCTCTCTCCACAAATTACTGAATCTATTGTCAATAAATCTGTCTCTCAATTCAGAATAGTTAAAAATGTTCAATTCATTCCAAATTACTTGGAAAAGAACATTCCTTTATCTCGTAAGCCTAAGCAGGCTGATGCCGTTGTCTCAGAAATATCTCATAAGCCTTTTATGGTTGGTGGAATGCCAAGGCCTGTGAGGGCTCATGAAGCGAAACCGGAGATGTTTGAGGATCGCCCTGCAAAGCCTGGGAGAGAGATACAGTTCCTTTGGGTTGATAAAAAGGATCCTGACTTTGAAGTGGCCAATAGATTGAAGCAGCTTGCTAAGGATCATGCTCTTGAAGTGGATATTGTGCTCAATCAACAGGTAAAGGTTGAAGAGAAGCTTGCAGAGAGGCAGCAATTAGCCCTCAAGGTGAATCATGAGAAGTTTGAAATGATAAATGGCGTGATAACAGATGGAACTGCTAAGTGTTTGGCAAACCGTTATCATATTCGAGTTGCAGATCATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

193

Amino Acids

22.19

Weight (kDa)

7.83

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05970 AT1G05970
fragaria_vesca	FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g03700 FvH4_4g03700
malus_domestica	MD13G1208600.v1.1 MD16G1210800.v1.1
prunus_persica	Prupe.1G032600_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1
pyrus_communis	pycom13g18070
rosa_chinensis	RchiOBHm_Chr4g0390851 RchiOBHm_Chr4g0390871 RchiOBHm_Chr4g0390901 RchiOBHm_Chr4g0390961 RchiOBHm_Chr4g0393311
rosa_laevigata	RLG00000009765 RLG00000009907
rosa_multiflora	Rmu_sc0000171.1_g000001 Rmu_sc0001590.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336820 Rroxscaffold_5G00338300
rosa_rugosa	Rorug03G0332400 Rorug03G0332500 Rorug04G0001900
rosa_samantha	Rh4AG033900 Rh4AG046600 Rh4BG027600 Rh4BG027900 Rh4BG028300 Rh4BG042200 Rh4CG037300 Rh4CG049700 Rh4DG031200 Rh4DG044000
rosa_wichuraiana	Rw4G002590 Rw4G002630 Rw4G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	300, 341, 354, 399
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	6 cut(s)	137, 359, 376, 404, 440, 497
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	2 cut(s)	382, 448
AluI	AGCT	2 cut(s)	382, 448
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	112, 211
AlwI	GGATC	4 cut(s)	300, 341, 354, 399
AoxI	GGCC	2 cut(s)	251, 363
ApeKI	GCWGC	2 cut(s)	379, 460
ApoI	RAATTY	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	391, 472
BccI	CCATC	1 cut(s)	515
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	112, 211
BisI	GCNGC	2 cut(s)	380, 461
BlsI	GCNGC	2 cut(s)	381, 462
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	309
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	187
Bpu10I	CCTNAGC	2 cut(s)	186, 387
BpuEI	CTTGAG	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	248, 308
BsaWI	WCCGGW	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	248, 308
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	391, 472
BshFI	GGCC	2 cut(s)	253, 365
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	278
BsmAI	GTCTC	2 cut(s)	112, 211
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	253, 365
Bsp1286I	GDGCHC	2 cut(s)	265, 420
Bsp143I	GATC	4 cut(s)	292, 346, 391, 568
BspANI	GGCC	2 cut(s)	253, 365
BspCNI	CTCAG	1 cut(s)	221
BspHI	TCATGA	2 cut(s)	265, 484
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	4 cut(s)	300, 341, 354, 399
BssECI	CCNNGG	2 cut(s)	248, 308
BssMI	GATC	4 cut(s)	292, 346, 391, 568
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	52, 324, 548
Bst6I	CTCTTC	1 cut(s)	435
BstC8I	GCNNGC	3 cut(s)	192, 384, 450
BstDEI	CTNAG	4 cut(s)	186, 208, 387, 531
BstKTI	GATC	4 cut(s)	295, 349, 394, 571
BstMAI	GTCTC	2 cut(s)	112, 211
BstMBI	GATC	4 cut(s)	292, 346, 391, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 269
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	391, 472
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	253, 365
Cac8I	GCNNGC	3 cut(s)	192, 384, 450
CciI	TCATGA	2 cut(s)	265, 484
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	266, 395, 485
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	4 cut(s)	186, 208, 387, 531
DpnI	GATC	4 cut(s)	294, 348, 393, 570
DpnII	GATC	4 cut(s)	292, 346, 391, 568
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	248
Eco147I	AGGCCT	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	3 cut(s)	269, 398, 488
FaiI	YATR	6 cut(s)	222, 233, 267, 396, 486, 555
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FatI	CATG	3 cut(s)	265, 394, 484
Fnu4HI	GCNGC	2 cut(s)	380, 461
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	2 cut(s)	380, 461
GluI	GCNGC	2 cut(s)	380, 461
HaeIII	GGCC	2 cut(s)	253, 365
HapII	CCGG	1 cut(s)	278
Hin1II	CATG	3 cut(s)	269, 398, 488
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	2 cut(s)	86, 481
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	4 cut(s)	10, 25, 119, 211
Hpy188III	TCNNGA	4 cut(s)	266, 350, 401, 485
Hpy8I	GTNNAC	1 cut(s)	55
HpyCH4III	ACNGT	3 cut(s)	52, 324, 548
HpyCH4V	TGCA	3 cut(s)	302, 452, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 269
HpyF3I	CTNAG	4 cut(s)	186, 208, 387, 531
Hsp92II	CATG	3 cut(s)	269, 398, 488
Kzo9I	GATC	4 cut(s)	292, 346, 391, 568
LpnPI	CCDG	8 cut(s)	176, 267, 291, 294, 312, 321, 363, 413
Lsp1109I	GCAGC	2 cut(s)	391, 472
LweI	GCATC	1 cut(s)	187
MalI	GATC	4 cut(s)	294, 348, 393, 570
MboI	GATC	4 cut(s)	292, 346, 391, 568
MboII	GAAGA	1 cut(s)	452
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	265, 420
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	6 cut(s)	26, 78, 113, 137, 148, 464
MluNI	TGGCCA	1 cut(s)	365
MnlI	CCTC	5 cut(s)	25, 252, 283, 450, 482
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	365
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	11, 269
NdeII	GATC	4 cut(s)	292, 346, 391, 568
NlaIII	CATG	3 cut(s)	269, 398, 488
NlaIV	GGNNCC	1 cut(s)	348
PagI	TCATGA	2 cut(s)	265, 484
PceI	AGGCCT	1 cut(s)	253
PctI	GAATGC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	86, 481
PkrI	GCNGC	2 cut(s)	381, 462
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	380, 461
Sau3AI	GATC	4 cut(s)	292, 346, 391, 568
ScaI	AGTACT	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	265, 420
SetI	ASST	7 cut(s)	42, 60, 384, 432, 438, 450, 480
SfaNI	GCATC	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	6 cut(s)	26, 78, 113, 137, 148, 464
SseBI	AGGCCT	1 cut(s)	253
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	3 cut(s)	52, 324, 548
TaqI	TCGA	1 cut(s)	559
TasI	AATT	6 cut(s)	26, 78, 113, 137, 148, 464
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	86, 481
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseI	GCWGC	2 cut(s)	379, 460
TspDTI	ATGAA	2 cut(s)	130, 282
XapI	RAATTY	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.