Rw4G002630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002030
Physical Location & Seq
Reverse (-)
5177230 .. 5194534
17305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002630.1

Sequence Viewer

Length: 636 bp
ATGGCTTCAGAAGCAGAGTACTCTGCATTTGAGGAAAAGGTCAGACGAACTGTTTACCTTGATAACCTCTCTCCACAGGTTACTGAACCGGTTGTCAGAAAAGCTATCTCTCAGTTTGGGACAGTTAAAAATGTTCAATTCATTCCAAATTACTTGGAAACAAAGAACATCCCCGTTTCTGCATTGGTGGAGATGGAGAACCCGAGGCAGGCTAATGCCATTGTCTCAGAAATATCTCACAGGCCTTTTATGGTTGGTGGAATTCCAAGGCCTGTGAGGGCACGTGAAGCGAAACCGGAGATGTTTGAGGATCGTCCTGCAAAGCCTGGTAGAAAGATAGAGTTCCGTTGGGTGGAGACAAAGGATCCTGACTTTGAAGTGGCAAATAAATTGAAGCAGCTTGCTAAGGAACATGCTCTTGAAGTTGACATTGCGCTCAATCAACAGGATCATGCTCTTAAAGTTGACATTGCGCTCAATCAACAGTTGGAGGATGAAGAGAAGCTTGCAGAGAGGCAGCAAGGAGCCCTCAAGGCGAATCATGAGAAGTATGAAATGATAAATGGTGTGATAACGGATGGAACTGCTAAGCGTTTGGCACAGCATTATCACATTCCAGTTGCAGATGAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

211

Amino Acids

24.11

Weight (kDa)

5.76

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 18 - 81 4.9e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 318, 359, 372, 456
AcsI RAATTY 1 cut(s) 261
AcvI CACGTG 1 cut(s) 284
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 208, 352
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 4 cut(s) 137, 377, 394, 422
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 3 cut(s) 104, 400, 505
AluI AGCT 3 cut(s) 104, 400, 505
Alw26I GTCTC 2 cut(s) 229, 350
AlwI GGATC 4 cut(s) 318, 359, 372, 456
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 2 cut(s) 242, 269
ApeKI GCWGC 2 cut(s) 397, 517
ApoI RAATTY 1 cut(s) 261
AsiGI ACCGGT 1 cut(s) 88
AspLEI GCGC 2 cut(s) 436, 475
AvaI CYCGRG 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 283
BamHI GGATCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 529
BbrPI CACGTG 1 cut(s) 284
BbvI GCAGC 2 cut(s) 409, 529
BccI CCATC 2 cut(s) 187, 572
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 229, 350
BglI GCCNNNNNGGC 1 cut(s) 533
BisI GCNGC 2 cut(s) 398, 518
BlpI GCTNAGC 1 cut(s) 588
BlsI GCNGC 2 cut(s) 399, 519
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 202
BmiI GGNNCC 2 cut(s) 366, 526
BmrFI CCNGG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 515
BsaAI YACGTR 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 203, 266
BsaWI WCCGGW 2 cut(s) 88, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 352
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 617
Bse3DI GCAATG 2 cut(s) 429, 468
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 203, 266
BseGI GGATG 3 cut(s) 168, 499, 583
BseLI CCNNNNNNNGG 2 cut(s) 208, 352
BseMI GCAATG 2 cut(s) 429, 468
BseMII CTCAG 2 cut(s) 125, 240
BseNI ACTGG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 2 cut(s) 409, 529
BshFI GGCC 2 cut(s) 244, 271
BshTI ACCGGT 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 2 cut(s) 89, 296
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 208, 352
BsmAI GTCTC 2 cut(s) 229, 350
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 244, 271
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 283, 529
Bsp143I GATC 3 cut(s) 310, 364, 448
Bsp1720I GCTNAGC 1 cut(s) 588
BspANI GGCC 2 cut(s) 244, 271
BspCNI CTCAG 2 cut(s) 124, 239
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 366, 526
BspPI GGATC 4 cut(s) 318, 359, 372, 456
BsrDI GCAATG 2 cut(s) 429, 468
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 617
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 203, 266
BssMI GATC 3 cut(s) 310, 364, 448
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 3 cut(s) 52, 124, 486
Bst6I CTCTTC 1 cut(s) 492
BstBAI YACGTR 1 cut(s) 284
BstC8I GCNNGC 3 cut(s) 210, 402, 507
BstDEI CTNAG 4 cut(s) 111, 226, 405, 588
BstF5I GGATG 3 cut(s) 168, 499, 583
BstHHI GCGC 2 cut(s) 436, 475
BstKTI GATC 3 cut(s) 313, 367, 451
BstMAI GTCTC 2 cut(s) 229, 350
BstMBI GATC 3 cut(s) 310, 364, 448
BstMWI GCNNNNNNNGC 3 cut(s) 11, 287, 533
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 2 cut(s) 409, 529
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 2 cut(s) 244, 271
BtsCI GGATG 3 cut(s) 168, 499, 583
Cac8I GCNNGC 3 cut(s) 210, 402, 507
CciI TCATGA 1 cut(s) 541
CfoI GCGC 2 cut(s) 436, 475
Cfr10I RCCGGY 1 cut(s) 88
Csp6I GTAC 1 cut(s) 19
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 3 cut(s) 413, 452, 542
CviJI RGCY 9 cut(s) 5, 104, 212, 244, 271, 325, 400, 505, 527
CviKI_1 RGCY 9 cut(s) 5, 104, 212, 244, 271, 325, 400, 505, 527
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 4 cut(s) 111, 226, 405, 588
DpnI GATC 3 cut(s) 312, 366, 450
DpnII GATC 3 cut(s) 310, 364, 448
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 1 cut(s) 266
Eco147I AGGCCT 2 cut(s) 244, 271
Eco24I GRGCYC 1 cut(s) 529
Eco72I CACGTG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 3 cut(s) 416, 455, 545
FaiI YATR 5 cut(s) 251, 414, 453, 543, 552
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 412, 451, 541
Fnu4HI GCNGC 2 cut(s) 398, 518
FokI GGATG 3 cut(s) 155, 506, 590
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 2 cut(s) 398, 518
GlaI GCGC 2 cut(s) 435, 474
GluI GCNGC 2 cut(s) 398, 518
HaeIII GGCC 2 cut(s) 244, 271
HapII CCGG 2 cut(s) 89, 296
HhaI GCGC 2 cut(s) 436, 475
Hin1II CATG 3 cut(s) 416, 455, 545
Hin6I GCGC 2 cut(s) 434, 473
HinP1I GCGC 2 cut(s) 434, 473
HincII GTYRAC 2 cut(s) 427, 466
HindII GTYRAC 2 cut(s) 427, 466
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 1 cut(s) 538
HpaII CCGG 2 cut(s) 89, 296
Hpy166II GTNNAC 3 cut(s) 55, 427, 466
Hpy188I TCNGA 4 cut(s) 10, 44, 98, 229
Hpy188III TCNNGA 3 cut(s) 368, 419, 542
Hpy8I GTNNAC 3 cut(s) 55, 427, 466
HpyCH4III ACNGT 3 cut(s) 52, 124, 486
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 5 cut(s) 26, 182, 320, 509, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 287, 533
HpyF3I CTNAG 4 cut(s) 111, 226, 405, 588
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 3 cut(s) 416, 455, 545
HspAI GCGC 2 cut(s) 434, 473
Kzo9I GATC 3 cut(s) 310, 364, 448
LmnI GCTCC 1 cut(s) 524
Lsp1109I GCAGC 2 cut(s) 409, 529
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 312, 366, 450
MboI GATC 3 cut(s) 310, 364, 448
MboII GAAGA 1 cut(s) 509
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 283, 529
MluCI AATT 4 cut(s) 137, 148, 261, 389
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 8 cut(s) 25, 77, 198, 270, 301, 484, 507, 539
MseI TTAA 2 cut(s) 126, 459
MspI CCGG 2 cut(s) 89, 296
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 11, 287, 533
NdeII GATC 3 cut(s) 310, 364, 448
NlaIII CATG 3 cut(s) 416, 455, 545
NlaIV GGNNCC 2 cut(s) 366, 526
NspI RCATGY 1 cut(s) 416
PagI TCATGA 1 cut(s) 541
PceI AGGCCT 2 cut(s) 244, 271
PfeI GAWTC 1 cut(s) 538
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 399, 519
PmaCI CACGTG 1 cut(s) 284
PmlI CACGTG 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 325
PspCI CACGTG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 366, 526
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 126, 459
SatI GCNGC 2 cut(s) 398, 518
Sau3AI GATC 3 cut(s) 310, 364, 448
ScaI AGTACT 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 283, 529
SetI ASST 8 cut(s) 42, 60, 69, 81, 106, 286, 402, 507
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 4 cut(s) 137, 148, 261, 389
SseBI AGGCCT 2 cut(s) 244, 271
StuI AGGCCT 2 cut(s) 244, 271
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 3 cut(s) 52, 124, 486
TaiI ACGT 1 cut(s) 286
TasI AATT 4 cut(s) 137, 148, 261, 389
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 2 cut(s) 126, 459
Tru9I TTAA 2 cut(s) 126, 459
TseI GCWGC 2 cut(s) 397, 517
TspDTI ATGAA 3 cut(s) 130, 510, 567
TspGWI ACGGA 2 cut(s) 335, 590
XapI RAATTY 1 cut(s) 261
XceI RCATGY 1 cut(s) 416
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.