Prupe.3G140200_v2.0.a1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002030
Physical Location & Seq
Forward (+)
14783377 .. 14785216
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G140200.1

Sequence Viewer

Length: 600 bp
ATGGGGACTCCAGAAGCAGAGTATGCTGCATTTGAGGAGAAGGTCAAACGAACTGTTTACCTAGATAACATCTCACCACAGGTCACCGATATTGTTGTCAGAACTGCTCTTTCTCAGTTTGGGACTGTGAAAAATGTTCAGTTCATTCCAGACTACTTCAAATCAAGGAACATCGGACAGTGTGCACTGGTGGAGATGGAGAACCCCAAACAGGCTGATGCTATTGTCTCAGAGATAGCTCAATTCCCATTCATGATGGCGGGGATGCCAAGGCCTGTGAGGGCATGTCCTGCTAAAGTGGAGATGTTTGATGATCGCCCTGCGAAGCCTGGAAGAAATATATCTTGTCGTTGGTTGGAGCCAAATGATCCTGATTTTGAAGTGGCACAAAAACTGAAGCGTCTTAATAAAAAGCATGCTGCTGAAGCGTCATCTTTGCTCAAGCAACAACTCCAGGAAGAAGAGAATCTTGCGAAGCAGCAGAATGAGGCTCTTAAAGCAAATCATAAGAAGTATGAAATGATAGATAGTGTGATAGCTGATGGAACTGCTCGTCATTTGGCAAAACGTTATAAAATGAGAATTGCAGATGACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

200

Amino Acids

22.68

Weight (kDa)

8.35

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
AciI CCGC 1 cut(s) 260
AclI AACGTT 1 cut(s) 568
AclWI GGATC 1 cut(s) 362
AcuI CTGAAG 2 cut(s) 416, 444
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 2 cut(s) 160, 380
AjnI CCWGG 2 cut(s) 328, 453
AluBI AGCT 2 cut(s) 239, 539
AluI AGCT 2 cut(s) 239, 539
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 232
Alw44I GTGCAC 1 cut(s) 183
AlwI GGATC 1 cut(s) 362
AoxI GGCC 1 cut(s) 272
ApaLI GTGCAC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 26, 419, 478
AsuHPI GGTGA 2 cut(s) 66, 76
BaeGI GKGCMC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 3 cut(s) 13, 406, 490
BccI CCATC 3 cut(s) 190, 250, 536
BciT130I CCWGG 2 cut(s) 330, 455
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 62
BisI GCNGC 3 cut(s) 27, 420, 479
BlsI GCNGC 3 cut(s) 28, 421, 480
Bme1390I CCNGG 2 cut(s) 330, 455
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 2 cut(s) 330, 455
BmsI GCATC 2 cut(s) 208, 255
BpmI CTGGAG 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 2 cut(s) 192, 599
BseBI CCWGG 2 cut(s) 330, 455
BseDI CCNNGG 1 cut(s) 269
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 128, 243
BseNI ACTGG 2 cut(s) 192, 599
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 3 cut(s) 13, 406, 490
BshFI GGCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 187
BslFI GGGAC 2 cut(s) 19, 136
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 19, 136
BsnI GGCC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 313, 367
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 2 cut(s) 127, 242
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 1 cut(s) 362
BsrI ACTGG 2 cut(s) 192, 599
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 2 cut(s) 313, 367
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 2 cut(s) 330, 455
Bst4CI ACNGT 3 cut(s) 55, 127, 180
Bst6I CTCTTC 1 cut(s) 456
BstAPI GCANNNNNTGC 2 cut(s) 23, 290
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 2 cut(s) 114, 229
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 2 cut(s) 316, 370
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 313, 367
BstMWI GCNNNNNNNGC 4 cut(s) 23, 290, 425, 497
BstNI CCWGG 2 cut(s) 330, 455
BstNSI RCATGY 2 cut(s) 288, 419
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 328, 453
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 13, 406, 490
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 185, 185
Cac8I GCNNGC 1 cut(s) 417
CciI TCATGA 1 cut(s) 252
CseI GACGC 2 cut(s) 389, 417
CviAII CATG 3 cut(s) 253, 285, 416
CviJI RGCY 7 cut(s) 215, 239, 274, 328, 361, 491, 539
CviKI_1 RGCY 7 cut(s) 215, 239, 274, 328, 361, 491, 539
DdeI CTNAG 2 cut(s) 114, 229
DpnI GATC 2 cut(s) 315, 369
DpnII GATC 2 cut(s) 313, 367
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 269
Eco147I AGGCCT 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 416, 444
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 328, 453
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 3 cut(s) 256, 288, 419
FaiI YATR 8 cut(s) 24, 254, 286, 341, 417, 507, 516, 573
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 2 cut(s) 19, 136
FatI CATG 3 cut(s) 252, 284, 415
FauI CCCGC 1 cut(s) 253
Fnu4HI GCNGC 3 cut(s) 27, 420, 479
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 3 cut(s) 27, 420, 479
FspBI CTAG 1 cut(s) 62
GluI GCNGC 3 cut(s) 27, 420, 479
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 1 cut(s) 274
HgaI GACGC 2 cut(s) 389, 417
Hin1II CATG 3 cut(s) 256, 288, 419
HinfI GANTC 2 cut(s) 7, 466
HphI GGTGA 2 cut(s) 66, 76
Hpy166II GTNNAC 2 cut(s) 58, 185
Hpy188I TCNGA 3 cut(s) 101, 176, 232
Hpy188III TCNNGA 4 cut(s) 11, 149, 253, 371
Hpy8I GTNNAC 2 cut(s) 58, 185
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 3 cut(s) 55, 127, 180
HpyCH4IV ACGT 1 cut(s) 568
HpyCH4V TGCA 3 cut(s) 29, 185, 587
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 290, 425, 497
HpyF3I CTNAG 2 cut(s) 114, 229
HpySE526I ACGT 1 cut(s) 568
Hsp92II CATG 3 cut(s) 256, 288, 419
Kzo9I GATC 2 cut(s) 313, 367
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 3 cut(s) 13, 406, 490
LweI GCATC 2 cut(s) 208, 255
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 315, 369
MboI GATC 2 cut(s) 313, 367
MboII GAAGA 3 cut(s) 345, 470, 473
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 2 cut(s) 242, 582
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 3 cut(s) 28, 273, 481
MseI TTAA 2 cut(s) 405, 495
MspR9I CCNGG 2 cut(s) 330, 455
MvaI CCWGG 2 cut(s) 330, 455
MwoI GCNNNNNNNGC 4 cut(s) 23, 290, 425, 497
NdeII GATC 2 cut(s) 313, 367
NlaIII CATG 3 cut(s) 256, 288, 419
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 2 cut(s) 288, 419
PaeI GCATGC 1 cut(s) 419
PagI TCATGA 1 cut(s) 252
PceI AGGCCT 1 cut(s) 274
PfeI GAWTC 1 cut(s) 466
PfoI TCCNGGA 1 cut(s) 453
PkrI GCNGC 3 cut(s) 28, 421, 480
PsiI TTATAA 1 cut(s) 573
Psp1406I AACGTT 1 cut(s) 568
Psp6I CCWGG 2 cut(s) 328, 453
PspEI GGTNACC 1 cut(s) 82
PspGI CCWGG 2 cut(s) 328, 453
PspN4I GGNNCC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 405, 495
SatI GCNGC 3 cut(s) 27, 420, 479
Sau3AI GATC 2 cut(s) 313, 367
ScrFI CCNGG 2 cut(s) 330, 455
SduI GDGCHC 1 cut(s) 187
SetI ASST 6 cut(s) 45, 63, 84, 241, 541, 571
SfaNI GCATC 2 cut(s) 208, 255
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SphI GCATGC 1 cut(s) 419
Sse9I AATT 2 cut(s) 242, 582
SseBI AGGCCT 1 cut(s) 274
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 62
StuI AGGCCT 1 cut(s) 274
StyD4I CCNGG 2 cut(s) 328, 453
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 3 cut(s) 55, 127, 180
TaiI ACGT 1 cut(s) 571
TasI AATT 2 cut(s) 242, 582
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 2 cut(s) 405, 495
Tru9I TTAA 2 cut(s) 405, 495
TscAI CASTG 2 cut(s) 185, 192
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 3 cut(s) 26, 419, 478
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 133, 241, 531
TspRI CASTG 2 cut(s) 185, 192
VneI GTGCAC 1 cut(s) 183
XceI RCATGY 2 cut(s) 288, 419
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.