RLG00000009765

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002030
Physical Location & Seq
Reverse (-)
57476791 .. 57477387
597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009765

Sequence Viewer

Length: 510 bp
ATGGAGGCTTCAGAAGCACAGTATGCTGAATTTGAGGAGAAGGTCAAAAGAACTGTTTACCTTGACAACCTCTCACCACAGAACGTCCCACAGTGTGCATTGATTGAGATGGAGAACCCAACAGAGGTCAATGCCATTGTCTCAGATATAGCGCAGAAGCCTTTCATGATTGGGGGGATGCCGAGGCCTGTGAGGGCACGCAAGGCTAAAATGGAGATGTTTGACGATCGCCCTGTAAAGCCCGGTAGAACAATACAGTTTCGTTGGTTGGAGCCAAATGATCCTGATTTTGAGGTGGCAAAGAAACTGAAGGAGCTTGCTAAAATTCATGCTGTGGAAGCTGAATATGTACTCAAGAAACAACTGGAGGATGAAGAGAAACTTGAAAAGCAGCATCAAGAATCCCTCAAAGCAACACATAAGAAGTATAAAATGATAGATAGTGTGATAGCTGATGGAACTACTAGGCAATTGGCCCGCGGTTATCATCTTCGGGTTGCAGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

170

Amino Acids

19.53

Weight (kDa)

6.14

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 480
AciI CCGC 2 cut(s) 478, 480
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 2 cut(s) 29, 324
AcuI CTGAAG 1 cut(s) 329
AdeI CACNNNGTG 1 cut(s) 95
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 386
AluBI AGCT 3 cut(s) 316, 341, 452
AluI AGCT 3 cut(s) 316, 341, 452
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 275
AoxI GGCC 2 cut(s) 185, 474
ApeKI GCWGC 1 cut(s) 391
ApoI RAATTY 2 cut(s) 29, 324
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 475
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 403
BccI CCATC 2 cut(s) 103, 449
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 465
BisI GCNGC 1 cut(s) 392
BlsI GCNGC 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 475
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 2 cut(s) 168, 403
BpmI CTGGAG 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 182, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 182, 478
BseGI GGATG 2 cut(s) 183, 376
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 403
Bsh1236I CGCG 1 cut(s) 480
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 2 cut(s) 187, 476
BsiEI CGRYCG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 2 cut(s) 187, 476
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 226, 280
BspACI CCGC 2 cut(s) 478, 480
BspANI GGCC 2 cut(s) 187, 476
BspCNI CTCAG 1 cut(s) 155
BspFNI CGCG 1 cut(s) 480
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 1 cut(s) 275
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 182, 478
BssMI GATC 2 cut(s) 226, 280
Bst4CI ACNGT 4 cut(s) 21, 55, 93, 258
Bst6I CTCTTC 1 cut(s) 369
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 3 cut(s) 199, 318, 478
BstDEI CTNAG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 478
BstF5I GGATG 2 cut(s) 183, 376
BstFNI CGCG 1 cut(s) 480
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 2 cut(s) 229, 283
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 2 cut(s) 226, 280
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 4 cut(s) 14, 23, 203, 338
BstSCI CCNGG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 1 cut(s) 403
BsuRI GGCC 2 cut(s) 187, 476
BtgI CCRYGG 1 cut(s) 478
BtsCI GGATG 2 cut(s) 183, 376
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 3 cut(s) 199, 318, 478
CciI TCATGA 1 cut(s) 165
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 475
Cfr42I CCGCGG 1 cut(s) 481
Csp6I GTAC 1 cut(s) 350
CviAII CATG 2 cut(s) 166, 329
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 1 cut(s) 142
DpnI GATC 2 cut(s) 228, 282
DpnII GATC 2 cut(s) 226, 280
DraIII CACNNNGTG 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 329
FaeI CATG 2 cut(s) 169, 332
FaiI YATR 7 cut(s) 24, 149, 167, 330, 348, 420, 429
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FaqI GGGAC 1 cut(s) 71
FatI CATG 2 cut(s) 165, 328
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 1 cut(s) 392
FokI GGATG 2 cut(s) 190, 383
Fsp4HI GCNGC 1 cut(s) 392
FspBI CTAG 1 cut(s) 465
GlaI GCGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 392
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 2 cut(s) 187, 476
HapII CCGG 1 cut(s) 243
HhaI GCGC 1 cut(s) 154
Hin1II CATG 2 cut(s) 169, 332
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 1 cut(s) 401
HpaII CCGG 1 cut(s) 243
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 13, 145
Hpy188III TCNNGA 4 cut(s) 166, 284, 355, 398
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 34, 304
HpyCH4III ACNGT 4 cut(s) 21, 55, 93, 258
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 98, 500
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 23, 203, 338
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 169, 332
HspAI GCGC 1 cut(s) 152
KspI CCGCGG 1 cut(s) 481
Kzo9I GATC 2 cut(s) 226, 280
LmnI GCTCC 2 cut(s) 271, 313
LpnPI CCDG 5 cut(s) 201, 246, 256, 297, 350
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 2 cut(s) 168, 403
MaeI CTAG 1 cut(s) 465
MaeII ACGT 1 cut(s) 84
MalI GATC 2 cut(s) 228, 282
MboI GATC 2 cut(s) 226, 280
MboII GAAGA 2 cut(s) 386, 482
MfeI CAATTG 1 cut(s) 470
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 3 cut(s) 29, 324, 470
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 8 cut(s) 28, 80, 118, 177, 186, 286, 361, 416
MroXI GAANNNNTTC 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 480
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 470
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 4 cut(s) 14, 23, 203, 338
NciI CCSGG 1 cut(s) 243
NdeII GATC 2 cut(s) 226, 280
NlaIII CATG 2 cut(s) 169, 332
NlaIV GGNNCC 1 cut(s) 273
NmeAIII GCCGAG 1 cut(s) 207
PagI TCATGA 1 cut(s) 165
PceI AGGCCT 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 1 cut(s) 393
Ple19I CGATCG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 1 cut(s) 475
PvuI CGATCG 1 cut(s) 229
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SacII CCGCGG 1 cut(s) 481
SatI GCNGC 1 cut(s) 392
Sau3AI GATC 2 cut(s) 226, 280
Sau96I GGNCC 1 cut(s) 475
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 199
SetI ASST 9 cut(s) 45, 63, 72, 87, 129, 297, 318, 343, 454
SfaNI GCATC 2 cut(s) 168, 403
Sfr303I CCGCGG 1 cut(s) 481
SgrBI CCGCGG 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 3 cut(s) 29, 324, 470
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 2 cut(s) 478, 480
SspMI CTAG 1 cut(s) 465
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 4 cut(s) 21, 55, 93, 258
TaiI ACGT 1 cut(s) 87
TasI AATT 3 cut(s) 29, 324, 470
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 1 cut(s) 401
TscAI CASTG 1 cut(s) 98
TseI GCWGC 1 cut(s) 391
TspDTI ATGAA 3 cut(s) 154, 317, 387
TspRI CASTG 1 cut(s) 98
XapI RAATTY 2 cut(s) 29, 324
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.