Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000171.1

Orthogroup ID

OG0002030

Physical Location & Seq

Genomic Coordinates Forward (+)

16415 .. 17011

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000171.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggcttcagaagcagagtactctgcatttgaggaaaaggtcagacgaactgtttaccttgataacctctctccacaggttactgaaccggttgtcagaaaagctatctctcagttcgggacagttaaaaatgttcaattcattccaaattacttggaaacaaagaacatccccgtttctgcattggtggagatggagaacccgaggcaggctaatgccattgtctcagaaatatctcacaggccttttatggttggtggaattccaaggcctgtgagggcacgtgaagcgaaaccggagatgtttgaggatcgtcctgcaaagcctggtagaaagatagagttccgttgggtggagacaaaggatcctgactttgaagtggcaaataaattgaagcagcttgctaaggaacatgctcttgaagttgacattgctctcaatcaacagttggaggatgaagagaagcttgcagagaggcagcaaggagccctcaaggcgaatcatgagaagtatgaaatgataaatggtgtgataacagatggaactgctaggcgtttggcacagcattatcacattccagttgcagatgaatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

198

Amino Acids

22.69

Weight (kDa)

5.82

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05970 AT1G05970
fragaria_vesca	FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g03700 FvH4_4g03700
malus_domestica	MD13G1208600.v1.1 MD16G1210800.v1.1
prunus_persica	Prupe.1G032600_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1
pyrus_communis	pycom13g18070
rosa_chinensis	RchiOBHm_Chr4g0390851 RchiOBHm_Chr4g0390871 RchiOBHm_Chr4g0390901 RchiOBHm_Chr4g0390961 RchiOBHm_Chr4g0393311
rosa_laevigata	RLG00000009765 RLG00000009907
rosa_multiflora	Rmu_sc0000171.1_g000001 Rmu_sc0001590.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336820 Rroxscaffold_5G00338300
rosa_rugosa	Rorug03G0332400 Rorug03G0332500 Rorug04G0001900
rosa_samantha	Rh4AG033900 Rh4AG046600 Rh4BG027600 Rh4BG027900 Rh4BG028300 Rh4BG042200 Rh4CG037300 Rh4CG049700 Rh4DG031200 Rh4DG044000
rosa_wichuraiana	Rw4G002590 Rw4G002630 Rw4G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	318, 359, 372
AcsI	RAATTY	1 cut(s)	261
AcvI	CACGTG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	208, 352
AgeI	ACCGGT	1 cut(s)	88
AgsI	TTSAA	4 cut(s)	137, 377, 394, 422
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	3 cut(s)	104, 400, 466
AluI	AGCT	3 cut(s)	104, 400, 466
Alw26I	GTCTC	2 cut(s)	229, 350
AlwI	GGATC	3 cut(s)	318, 359, 372
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	2 cut(s)	242, 269
ApeKI	GCWGC	2 cut(s)	397, 478
ApoI	RAATTY	1 cut(s)	261
AsiGI	ACCGGT	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	283
BamHI	GGATCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	490
BbrPI	CACGTG	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	409, 490
BccI	CCATC	2 cut(s)	187, 533
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	2 cut(s)	229, 350
BfaI	CTAG	1 cut(s)	549
BglI	GCCNNNNNGGC	1 cut(s)	494
BisI	GCNGC	2 cut(s)	398, 479
BlsI	GCNGC	2 cut(s)	399, 480
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	366, 487
BmrFI	CCNGG	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	203, 266
BsaWI	WCCGGW	2 cut(s)	88, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 352
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	578
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	203, 266
BseGI	GGATG	2 cut(s)	168, 460
BseLI	CCNNNNNNNGG	2 cut(s)	208, 352
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	125, 240
BseNI	ACTGG	1 cut(s)	578
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	409, 490
BshFI	GGCC	2 cut(s)	244, 271
BshTI	ACCGGT	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	89, 296
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	2 cut(s)	208, 352
BsmAI	GTCTC	2 cut(s)	229, 350
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	244, 271
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	283, 490
Bsp143I	GATC	2 cut(s)	310, 364
BspANI	GGCC	2 cut(s)	244, 271
BspCNI	CTCAG	2 cut(s)	124, 239
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	366, 487
BspPI	GGATC	3 cut(s)	318, 359, 372
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	578
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	203, 266
BssMI	GATC	2 cut(s)	310, 364
BssT1I	CCWWGG	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	52, 124, 447
Bst6I	CTCTTC	1 cut(s)	453
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	210, 402, 468
BstDEI	CTNAG	3 cut(s)	111, 226, 405
BstF5I	GGATG	2 cut(s)	168, 460
BstKTI	GATC	2 cut(s)	313, 367
BstMAI	GTCTC	2 cut(s)	229, 350
BstMBI	GATC	2 cut(s)	310, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 287, 494
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	409, 490
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	244, 271
BtsCI	GGATG	2 cut(s)	168, 460
Cac8I	GCNNGC	3 cut(s)	210, 402, 468
CciI	TCATGA	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	19
CspAI	ACCGGT	1 cut(s)	88
CviAII	CATG	2 cut(s)	413, 503
CviJI	RGCY	9 cut(s)	5, 104, 212, 244, 271, 325, 400, 466, 488
CviKI_1	RGCY	9 cut(s)	5, 104, 212, 244, 271, 325, 400, 466, 488
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	3 cut(s)	111, 226, 405
DpnI	GATC	2 cut(s)	312, 366
DpnII	GATC	2 cut(s)	310, 364
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	266
Eco147I	AGGCCT	2 cut(s)	244, 271
Eco24I	GRGCYC	1 cut(s)	490
Eco72I	CACGTG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	2 cut(s)	416, 506
FaiI	YATR	4 cut(s)	251, 414, 504, 513
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	2 cut(s)	412, 502
Fnu4HI	GCNGC	2 cut(s)	398, 479
FokI	GGATG	2 cut(s)	155, 467
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	2 cut(s)	398, 479
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	2 cut(s)	398, 479
HaeIII	GGCC	2 cut(s)	244, 271
HapII	CCGG	2 cut(s)	89, 296
Hin1II	CATG	2 cut(s)	416, 506
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	2 cut(s)	89, 296
Hpy166II	GTNNAC	2 cut(s)	55, 427
Hpy188I	TCNGA	4 cut(s)	10, 44, 98, 229
Hpy188III	TCNNGA	4 cut(s)	118, 368, 419, 503
Hpy8I	GTNNAC	2 cut(s)	55, 427
HpyCH4III	ACNGT	3 cut(s)	52, 124, 447
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	5 cut(s)	26, 182, 320, 470, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 287, 494
HpyF3I	CTNAG	3 cut(s)	111, 226, 405
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	416, 506
Kzo9I	GATC	2 cut(s)	310, 364
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	2 cut(s)	409, 490
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	312, 366
MboI	GATC	2 cut(s)	310, 364
MboII	GAAGA	1 cut(s)	470
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	283, 490
MluCI	AATT	4 cut(s)	137, 148, 261, 389
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	8 cut(s)	25, 77, 198, 270, 301, 445, 468, 500
MseI	TTAA	1 cut(s)	126
MspI	CCGG	2 cut(s)	89, 296
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	11, 287, 494
NdeII	GATC	2 cut(s)	310, 364
NlaIII	CATG	2 cut(s)	416, 506
NlaIV	GGNNCC	2 cut(s)	366, 487
NspI	RCATGY	1 cut(s)	416
PagI	TCATGA	1 cut(s)	502
PceI	AGGCCT	2 cut(s)	244, 271
PfeI	GAWTC	1 cut(s)	499
PinAI	ACCGGT	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	399, 480
PmaCI	CACGTG	1 cut(s)	284
PmlI	CACGTG	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	325
PspCI	CACGTG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	366, 487
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	398, 479
Sau3AI	GATC	2 cut(s)	310, 364
ScaI	AGTACT	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	2 cut(s)	283, 490
SetI	ASST	8 cut(s)	42, 60, 69, 81, 106, 286, 402, 468
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	4 cut(s)	137, 148, 261, 389
SseBI	AGGCCT	2 cut(s)	244, 271
SspMI	CTAG	1 cut(s)	549
StuI	AGGCCT	2 cut(s)	244, 271
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	3 cut(s)	52, 124, 447
TaiI	ACGT	1 cut(s)	286
TasI	AATT	4 cut(s)	137, 148, 261, 389
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseI	GCWGC	2 cut(s)	397, 478
TspDTI	ATGAA	3 cut(s)	130, 471, 528
TspGWI	ACGGA	1 cut(s)	335
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	1 cut(s)	549
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.