RLG00000009907

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002030
Physical Location & Seq
Forward (+)
59934092 .. 59938304
4213 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009907

Sequence Viewer

Length: 1146 bp
ATGAAAGCCCACCAGATTAGGCCCAGTAGCCAAGGGCAGGCCCAAGAGCCCAGAAACCAAGCAAACGAGTGCGGGTCGGAGTTAAACTGCTTGTGTGTAGCCGGACCAGCACCTCGGCTTCCAACGGAGCACGTCGCCACACCGAACCATAGCCACCAGCTGACTTCGCCGACCGGATCGTCTTGGATCTCAATTCCAACCCGGAACCTGATCCAAAACAGGATCGATCACCACAGCCTCCATCAGACTCTCTCAACCCCAAAACAGGGGAAACCGCAACGACAGCCCGCCTCCGCCGCGCACCAAAACCCCTTCGCCGCACCGCCCTTGCTCGAAACCGCCGCCGCGCAGATCAGAAACGAACAAGGAGGACCCCCTCTGCTTGTCGTTCCCTCTCCGGACGCGACCCGGTCATTCCCAGCCCCCTGCTCCATCCGCAGAACCCCTGTCCCTCACCGTTTCAGTCTTCTTCCTCAGACACATCGACTCGGTGAGTCAACTTTCACTTCTCTTCTGGGTTCCTCAGAGATTTTTACTTGCTGTTGGAATATGGCTTCAGAAGCAGAGTACTCTGCATTTGAGGAAAAGGTCAGACGAACTGTTTACCTTGATAACCTCTCTCCACAGGTTACTGAACCGGTTGTCAGAAAAGCTATCTCTCAGTTCGGGACAGTTAAAAATGTTCAATTCATTCCAAATTACTTGGAAACAAAGAACATCCCCGTTTCTGCATTGGTGGAGATGGAGAACCCGAGGCAGGCTAATGCCATTGTCTCAGAAATATCTCACAGGCCTTTTATGGTTGGTGGAATTCCAAGGCCCGTGAGGGCACGTGAAGCGAAACCGGAGATGTTTGGGGATCGTCCTGCAAAGCCTGGTAGAAAGATAGAGTTCCGTTGGGTGGAGACAACGGATCCTGACTTTGAAGTGGCAAATAAATTGAAGCAGCTTGCTAAGGATCATGCTCTTGAAGTTGACATTGCGCTCAATCAACAATTGGAGGATGAAGAGAAGCTTGCAGAGAGGCAGCAAGGAGCCCTCAAGGCGAATCATGAGAAGTATGAAATGATAAATGGCGTGATAACAGATGGAACTGCTAAGCGTTTGGCACAGCATTATCACATTCCAGTTGCAGATGAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

382

Amino Acids

42.41

Weight (kDa)

7.74

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 201 - 264 1.5e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 178
AccII CGCG 3 cut(s) 299, 347, 404
AccIII TCCGGA 1 cut(s) 397
AclWI GGATC 8 cut(s) 184, 194, 205, 230, 867, 908, 921, 966
AcsI RAATTY 1 cut(s) 810
AcuI CTGAAG 1 cut(s) 540
AcvI CACGTG 1 cut(s) 833
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 5 cut(s) 37, 265, 266, 757, 901
AgeI ACCGGT 1 cut(s) 637
AgsI TTSAA 4 cut(s) 686, 926, 943, 971
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 1 cut(s) 874
AluBI AGCT 4 cut(s) 160, 653, 949, 1015
AluI AGCT 4 cut(s) 160, 653, 949, 1015
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 778, 899
AlwI GGATC 8 cut(s) 184, 194, 205, 230, 867, 908, 921, 966
Ama87I CYCGRG 1 cut(s) 751
Aor13HI TCCGGA 1 cut(s) 397
AoxI GGCC 4 cut(s) 20, 39, 791, 818
ApeKI GCWGC 2 cut(s) 946, 1027
ApoI RAATTY 1 cut(s) 810
AsiGI ACCGGT 1 cut(s) 637
AspLEI GCGC 3 cut(s) 301, 349, 985
AspS9I GGNCC 5 cut(s) 21, 40, 104, 371, 819
AsuC2I CCSGG 2 cut(s) 202, 409
AsuHPI GGTGA 3 cut(s) 221, 446, 503
AvaI CYCGRG 1 cut(s) 751
AvaII GGWCC 2 cut(s) 104, 371
BaeGI GKGCMC 1 cut(s) 832
BamHI GGATCC 1 cut(s) 913
BanII GRGCYC 2 cut(s) 51, 1039
BbrPI CACGTG 1 cut(s) 833
BbsI GAAGAC 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 958, 1039
BccI CCATC 4 cut(s) 249, 440, 736, 1082
BciT130I CCWGG 1 cut(s) 876
BcnI CCSGG 2 cut(s) 202, 409
BcoDI GTCTC 2 cut(s) 778, 899
BglI GCCNNNNNGGC 1 cut(s) 1043
BisI GCNGC 6 cut(s) 297, 318, 342, 345, 947, 1028
BlpI GCTNAGC 1 cut(s) 1098
BlsI GCNGC 6 cut(s) 298, 319, 343, 346, 948, 1029
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 3 cut(s) 202, 409, 876
Bme18I GGWCC 2 cut(s) 104, 371
BmeT110I CYCGRG 1 cut(s) 751
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 5 cut(s) 21, 40, 104, 371, 819
BmiI GGNNCC 5 cut(s) 206, 373, 520, 915, 1036
BmrFI CCNGG 3 cut(s) 202, 409, 876
BmrI ACTGGG 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 458
Bpu10I CCTNAGC 1 cut(s) 954
Bpu1102I GCTNAGC 1 cut(s) 1098
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 2 cut(s) 202, 409
Bsa29I ATCGAT 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 833
BsaJI CCNNGG 4 cut(s) 31, 113, 752, 815
BsaWI WCCGGW 4 cut(s) 173, 397, 637, 844
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 265, 266, 757, 901
Bse118I RCCGGY 1 cut(s) 637
Bse1I ACTGG 2 cut(s) 24, 1127
Bse3DI GCAATG 1 cut(s) 978
BseAI TCCGGA 1 cut(s) 397
BseBI CCWGG 1 cut(s) 876
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 4 cut(s) 31, 113, 752, 815
BseGI GGATG 3 cut(s) 432, 717, 1009
BseLI CCNNNNNNNGG 5 cut(s) 37, 265, 266, 757, 901
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 4 cut(s) 488, 537, 674, 789
BseNI ACTGG 2 cut(s) 24, 1127
BseSI GKGCMC 1 cut(s) 832
BseXI GCAGC 2 cut(s) 958, 1039
BseYI CCCAGC 1 cut(s) 418
Bsh1236I CGCG 3 cut(s) 299, 347, 404
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 4 cut(s) 22, 41, 793, 820
BshTI ACCGGT 1 cut(s) 637
BshVI ATCGAT 1 cut(s) 225
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 751
BsiSI CCGG 7 cut(s) 102, 174, 202, 398, 409, 638, 845
BslFI GGGAC 2 cut(s) 434, 682
BslI CCNNNNNNNGG 5 cut(s) 37, 265, 266, 757, 901
BsmAI GTCTC 2 cut(s) 778, 899
BsmFI GGGAC 2 cut(s) 434, 682
BsnI GGCC 4 cut(s) 22, 41, 793, 820
BsoBI CYCGRG 1 cut(s) 751
Bsp1286I GDGCHC 4 cut(s) 51, 132, 832, 1039
Bsp13I TCCGGA 1 cut(s) 397
Bsp143I GATC 9 cut(s) 176, 186, 210, 222, 226, 351, 859, 913, 958
Bsp1720I GCTNAGC 1 cut(s) 1098
BspANI GGCC 4 cut(s) 22, 41, 793, 820
BspCNI CTCAG 4 cut(s) 487, 536, 673, 788
BspDI ATCGAT 1 cut(s) 225
BspEI TCCGGA 1 cut(s) 397
BspFNI CGCG 3 cut(s) 299, 347, 404
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 5 cut(s) 206, 373, 520, 915, 1036
BspPI GGATC 8 cut(s) 184, 194, 205, 230, 867, 908, 921, 966
BsrDI GCAATG 1 cut(s) 978
BsrFI RCCGGY 1 cut(s) 637
BsrI ACTGG 2 cut(s) 24, 1127
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 4 cut(s) 31, 113, 752, 815
BssMI GATC 9 cut(s) 176, 186, 210, 222, 226, 351, 859, 913, 958
BssT1I CCWWGG 2 cut(s) 31, 815
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 3 cut(s) 458, 601, 673
Bst6I CTCTTC 2 cut(s) 516, 1002
BstBAI YACGTR 1 cut(s) 833
BstC8I GCNNGC 5 cut(s) 39, 288, 759, 951, 1017
BstDEI CTNAG 6 cut(s) 474, 523, 660, 775, 954, 1098
BstF5I GGATG 3 cut(s) 432, 717, 1009
BstFNI CGCG 3 cut(s) 299, 347, 404
BstHHI GCGC 3 cut(s) 301, 349, 985
BstKTI GATC 9 cut(s) 179, 189, 213, 225, 229, 354, 862, 916, 961
BstMAI GTCTC 2 cut(s) 778, 899
BstMBI GATC 9 cut(s) 176, 186, 210, 222, 226, 351, 859, 913, 958
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 8 cut(s) 107, 166, 283, 296, 435, 560, 836, 1043
BstNI CCWGG 1 cut(s) 876
BstSCI CCNGG 3 cut(s) 200, 407, 874
BstSLI GKGCMC 1 cut(s) 832
BstUI CGCG 3 cut(s) 299, 347, 404
BstV1I GCAGC 2 cut(s) 958, 1039
BstV2I GAAGAC 1 cut(s) 458
BstX2I RGATCY 2 cut(s) 186, 913
BstYI RGATCY 2 cut(s) 186, 913
Bsu15I ATCGAT 1 cut(s) 225
BsuRI GGCC 4 cut(s) 22, 41, 793, 820
BsuTUI ATCGAT 1 cut(s) 225
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 3 cut(s) 432, 717, 1009
Cac8I GCNNGC 5 cut(s) 39, 288, 759, 951, 1017
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 3 cut(s) 301, 349, 985
Cfr10I RCCGGY 1 cut(s) 637
Cfr13I GGNCC 5 cut(s) 21, 40, 104, 371, 819
ClaI ATCGAT 1 cut(s) 225
CseI GACGC 1 cut(s) 410
Csp6I GTAC 1 cut(s) 568
CspAI ACCGGT 1 cut(s) 637
CviAII CATG 2 cut(s) 962, 1052
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 6 cut(s) 474, 523, 660, 775, 954, 1098
DpnI GATC 9 cut(s) 178, 188, 212, 224, 228, 353, 861, 915, 960
DpnII GATC 9 cut(s) 176, 186, 210, 222, 226, 351, 859, 913, 958
DrdI GACNNNNNNGTC 1 cut(s) 178
DseDI GACNNNNNNGTC 1 cut(s) 178
Eam1104I CTCTTC 2 cut(s) 516, 1002
EarI CTCTTC 2 cut(s) 516, 1002
EciI GGCGGA 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 31, 815
Eco147I AGGCCT 1 cut(s) 793
Eco24I GRGCYC 2 cut(s) 51, 1039
Eco47I GGWCC 2 cut(s) 104, 371
Eco57I CTGAAG 1 cut(s) 540
Eco72I CACGTG 1 cut(s) 833
Eco88I CYCGRG 1 cut(s) 751
EcoO109I RGGNCCY 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 810
EcoRII CCWGG 1 cut(s) 874
EcoT14I CCWWGG 2 cut(s) 31, 815
EcoT38I GRGCYC 2 cut(s) 51, 1039
ErhI CCWWGG 2 cut(s) 31, 815
FaeI CATG 2 cut(s) 965, 1055
FaiI YATR 6 cut(s) 150, 551, 800, 963, 1053, 1062
FalI AAGNNNNNCTT 2 cut(s) 999, 1031
FaqI GGGAC 2 cut(s) 434, 682
FatI CATG 2 cut(s) 961, 1051
FauI CCCGC 2 cut(s) 65, 295
Fnu4HI GCNGC 6 cut(s) 297, 318, 342, 345, 947, 1028
FokI GGATG 3 cut(s) 419, 704, 1016
FriOI GRGCYC 2 cut(s) 51, 1039
Fsp4HI GCNGC 6 cut(s) 297, 318, 342, 345, 947, 1028
GlaI GCGC 3 cut(s) 300, 348, 984
GluI GCNGC 6 cut(s) 297, 318, 342, 345, 947, 1028
GsaI CCCAGC 1 cut(s) 422
HaeIII GGCC 4 cut(s) 22, 41, 793, 820
HapII CCGG 7 cut(s) 102, 174, 202, 398, 409, 638, 845
HgaI GACGC 1 cut(s) 410
HhaI GCGC 3 cut(s) 301, 349, 985
Hin1II CATG 2 cut(s) 965, 1055
Hin6I GCGC 3 cut(s) 299, 347, 983
HinP1I GCGC 3 cut(s) 299, 347, 983
HincII GTYRAC 2 cut(s) 498, 976
HindII GTYRAC 2 cut(s) 498, 976
HindIII AAGCTT 1 cut(s) 1013
HinfI GANTC 4 cut(s) 247, 486, 494, 1048
HpaII CCGG 7 cut(s) 102, 174, 202, 398, 409, 638, 845
HphI GGTGA 3 cut(s) 221, 446, 503
Hpy166II GTNNAC 3 cut(s) 498, 604, 976
Hpy188I TCNGA 9 cut(s) 79, 246, 356, 477, 526, 559, 593, 647, 778
Hpy188III TCNNGA 5 cut(s) 398, 667, 917, 968, 1052
Hpy8I GTNNAC 3 cut(s) 498, 604, 976
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 3 cut(s) 458, 601, 673
HpyCH4IV ACGT 2 cut(s) 132, 832
HpyCH4V TGCA 5 cut(s) 575, 731, 869, 1019, 1133
HpyF10VI GCNNNNNNNGC 8 cut(s) 107, 166, 283, 296, 435, 560, 836, 1043
HpyF3I CTNAG 6 cut(s) 474, 523, 660, 775, 954, 1098
HpySE526I ACGT 2 cut(s) 132, 832
Hsp92II CATG 2 cut(s) 965, 1055
HspAI GCGC 3 cut(s) 299, 347, 983
Kpn2I TCCGGA 1 cut(s) 397
Kzo9I GATC 9 cut(s) 176, 186, 210, 222, 226, 351, 859, 913, 958
LmnI GCTCC 3 cut(s) 127, 434, 1034
Lsp1109I GCAGC 2 cut(s) 958, 1039
MaeII ACGT 2 cut(s) 132, 832
MaeIII GTNAC 1 cut(s) 628
MalI GATC 9 cut(s) 178, 188, 212, 224, 228, 353, 861, 915, 960
MboI GATC 9 cut(s) 176, 186, 210, 222, 226, 351, 859, 913, 958
MboII GAAGA 4 cut(s) 458, 461, 503, 1019
MfeI CAATTG 1 cut(s) 995
MflI RGATCY 2 cut(s) 186, 913
MhlI GDGCHC 4 cut(s) 51, 132, 832, 1039
MluCI AATT 6 cut(s) 192, 686, 697, 810, 938, 995
MlyI GAGTC 3 cut(s) 241, 480, 503
MmeI TCCRAC 4 cut(s) 57, 146, 221, 524
MroI TCCGGA 1 cut(s) 397
MseI TTAA 2 cut(s) 83, 675
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 7 cut(s) 102, 174, 202, 398, 409, 638, 845
MspR9I CCNGG 3 cut(s) 202, 409, 876
MunI CAATTG 1 cut(s) 995
MvaI CCWGG 1 cut(s) 876
MvnI CGCG 3 cut(s) 299, 347, 404
MwoI GCNNNNNNNGC 8 cut(s) 107, 166, 283, 296, 435, 560, 836, 1043
NciI CCSGG 2 cut(s) 202, 409
NdeII GATC 9 cut(s) 176, 186, 210, 222, 226, 351, 859, 913, 958
NlaIII CATG 2 cut(s) 965, 1055
NlaIV GGNNCC 5 cut(s) 206, 373, 520, 915, 1036
NmeAIII GCCGAG 1 cut(s) 94
PagI TCATGA 1 cut(s) 1051
PceI AGGCCT 1 cut(s) 793
PfeI GAWTC 1 cut(s) 1048
PflFI GACNNNGTC 1 cut(s) 409
PinAI ACCGGT 1 cut(s) 637
PkrI GCNGC 6 cut(s) 298, 319, 343, 346, 948, 1029
PleI GAGTC 3 cut(s) 241, 480, 502
PmaCI CACGTG 1 cut(s) 833
PmlI CACGTG 1 cut(s) 833
PpsI GAGTC 3 cut(s) 241, 480, 502
Ppu21I YACGTR 1 cut(s) 833
PpuMI RGGWCCY 1 cut(s) 371
Psp5II RGGWCCY 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 874
PspCI CACGTG 1 cut(s) 833
PspFI CCCAGC 1 cut(s) 418
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 5 cut(s) 206, 373, 520, 915, 1036
PspPI GGNCC 5 cut(s) 21, 40, 104, 371, 819
PspPPI RGGWCCY 1 cut(s) 371
PsuI RGATCY 2 cut(s) 186, 913
PsyI GACNNNGTC 1 cut(s) 409
PvuII CAGCTG 1 cut(s) 160
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
SaqAI TTAA 2 cut(s) 83, 675
SatI GCNGC 6 cut(s) 297, 318, 342, 345, 947, 1028
Sau3AI GATC 9 cut(s) 176, 186, 210, 222, 226, 351, 859, 913, 958
Sau96I GGNCC 5 cut(s) 21, 40, 104, 371, 819
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 3 cut(s) 241, 480, 503
ScrFI CCNGG 3 cut(s) 202, 409, 876
SduI GDGCHC 4 cut(s) 51, 132, 832, 1039
SinI GGWCC 2 cut(s) 104, 371
SmlI CTYRAG 1 cut(s) 1040
SmoI CTYRAG 1 cut(s) 1040
Sse9I AATT 6 cut(s) 192, 686, 697, 810, 938, 995
SseBI AGGCCT 1 cut(s) 793
StuI AGGCCT 1 cut(s) 793
StyD4I CCNGG 3 cut(s) 200, 407, 874
StyI CCWWGG 2 cut(s) 31, 815
TaaI ACNGT 3 cut(s) 458, 601, 673
TaiI ACGT 2 cut(s) 135, 835
TaqI TCGA 3 cut(s) 225, 333, 484
TasI AATT 6 cut(s) 192, 686, 697, 810, 938, 995
TatI WGTACW 1 cut(s) 567
TauI GCSGC 4 cut(s) 299, 320, 344, 347
TfiI GAWTC 1 cut(s) 1048
Tru1I TTAA 2 cut(s) 83, 675
Tru9I TTAA 2 cut(s) 83, 675
TseI GCWGC 2 cut(s) 946, 1027
TspDTI ATGAA 4 cut(s) 17, 679, 1020, 1077
TspGWI ACGGA 3 cut(s) 140, 884, 926
Tth111I GACNNNGTC 1 cut(s) 409
VpaK11BI GGWCC 2 cut(s) 104, 371
XapI RAATTY 1 cut(s) 810
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.