RchiOBHm_Chr4g0390901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002030
Physical Location & Seq
Reverse (-)
6197163 .. 6197759
597 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36382

Sequence Viewer

Length: 597 bp
ATGGCTTCAGAAGCAGAGTACTCTGCATTTGAGGAAAAGGTCAGACGAACTGTTTACCTTGATAAACTCTCTCCACAGGTTACTGAACCGGTTGTCAGAAAAGCTATCTCTCAGTTTGGAACAGTTAAAAATGTTCAATTCATTCCAAATTACTTGGAAACAAAGAACATCCCCGTTTCTGCATTGGTGGAGATGGAGAACCCGAGGCAGGCTAATGCCATTGTCTCAGAAATATCTCACAGGCCTTTTATGGTTGGTGGAATTCCAAGGCCTGTGAGGGCACGTGAAGCGAAACCGGAGATGTTTGGGGATCGTCCTGCAAAGCCCGGTAGAAAGATAGAGTTCCGTTGGGTGGAGACAAAGGATCCTGACTTTGAAGTGGCAAATAAATTGAAGCAGCTTGCTAAGGATCATGCTCTTGAAGTTGACATTGCGCTCAATCAACAGTTGGAGGATGAAGAGAAGCTTGCAGAGAGGCAGCAAGGAGCCCTCAAGGCGAATCATGAGAAGTATGAAATGATAAATAGTGTGATAACAGATGGAACTGCTAGGCGGTTGGCACAGCATTATCACATTCCAGTTGCAGATGAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

198

Amino Acids

22.65

Weight (kDa)

6.25

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 18 - 81 6.5e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 553
AclWI GGATC 4 cut(s) 318, 359, 372, 417
AcsI RAATTY 1 cut(s) 261
AcvI CACGTG 1 cut(s) 284
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 208, 352
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 4 cut(s) 137, 377, 394, 422
AluBI AGCT 3 cut(s) 104, 400, 466
AluI AGCT 3 cut(s) 104, 400, 466
Alw26I GTCTC 2 cut(s) 229, 350
AlwI GGATC 4 cut(s) 318, 359, 372, 417
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 2 cut(s) 242, 269
ApeKI GCWGC 2 cut(s) 397, 478
ApoI RAATTY 1 cut(s) 261
AsiGI ACCGGT 1 cut(s) 88
AspLEI GCGC 1 cut(s) 436
AsuC2I CCSGG 1 cut(s) 327
AvaI CYCGRG 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 283
BamHI GGATCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 490
BbrPI CACGTG 1 cut(s) 284
BbvI GCAGC 2 cut(s) 409, 490
BccI CCATC 2 cut(s) 187, 533
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 229, 350
BfaI CTAG 1 cut(s) 549
BglI GCCNNNNNGGC 1 cut(s) 494
BisI GCNGC 2 cut(s) 398, 479
BlsI GCNGC 2 cut(s) 399, 480
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 202
BmiI GGNNCC 2 cut(s) 366, 487
BmrFI CCNGG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 476
BpuMI CCSGG 1 cut(s) 327
BsaAI YACGTR 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 203, 266
BsaWI WCCGGW 2 cut(s) 88, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 352
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 578
Bse3DI GCAATG 1 cut(s) 429
BseDI CCNNGG 2 cut(s) 203, 266
BseGI GGATG 2 cut(s) 168, 460
BseLI CCNNNNNNNGG 2 cut(s) 208, 352
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 2 cut(s) 125, 240
BseNI ACTGG 1 cut(s) 578
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 2 cut(s) 409, 490
BshFI GGCC 2 cut(s) 244, 271
BshTI ACCGGT 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 3 cut(s) 89, 296, 327
BslI CCNNNNNNNGG 2 cut(s) 208, 352
BsmAI GTCTC 2 cut(s) 229, 350
BsnI GGCC 2 cut(s) 244, 271
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 283, 490
Bsp143I GATC 3 cut(s) 310, 364, 409
BspACI CCGC 1 cut(s) 553
BspANI GGCC 2 cut(s) 244, 271
BspCNI CTCAG 2 cut(s) 124, 239
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 366, 487
BspPI GGATC 4 cut(s) 318, 359, 372, 417
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 578
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 203, 266
BssMI GATC 3 cut(s) 310, 364, 409
BssT1I CCWWGG 1 cut(s) 266
Bst4CI ACNGT 3 cut(s) 52, 124, 447
Bst6I CTCTTC 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 284
BstC8I GCNNGC 3 cut(s) 210, 402, 468
BstDEI CTNAG 3 cut(s) 111, 226, 405
BstF5I GGATG 2 cut(s) 168, 460
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 3 cut(s) 313, 367, 412
BstMAI GTCTC 2 cut(s) 229, 350
BstMBI GATC 3 cut(s) 310, 364, 409
BstMWI GCNNNNNNNGC 3 cut(s) 11, 287, 494
BstSCI CCNGG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 2 cut(s) 409, 490
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 2 cut(s) 244, 271
BtsCI GGATG 2 cut(s) 168, 460
Cac8I GCNNGC 3 cut(s) 210, 402, 468
CciI TCATGA 1 cut(s) 502
CfoI GCGC 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 88
Csp6I GTAC 1 cut(s) 19
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 2 cut(s) 413, 503
CviJI RGCY 9 cut(s) 5, 104, 212, 244, 271, 325, 400, 466, 488
CviKI_1 RGCY 9 cut(s) 5, 104, 212, 244, 271, 325, 400, 466, 488
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 3 cut(s) 111, 226, 405
DpnI GATC 3 cut(s) 312, 366, 411
DpnII GATC 3 cut(s) 310, 364, 409
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 266
Eco147I AGGCCT 2 cut(s) 244, 271
Eco24I GRGCYC 1 cut(s) 490
Eco72I CACGTG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 2 cut(s) 416, 506
FaiI YATR 4 cut(s) 251, 414, 504, 513
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 2 cut(s) 412, 502
Fnu4HI GCNGC 2 cut(s) 398, 479
FokI GGATG 2 cut(s) 155, 467
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 2 cut(s) 398, 479
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 435
GluI GCNGC 2 cut(s) 398, 479
HaeIII GGCC 2 cut(s) 244, 271
HapII CCGG 3 cut(s) 89, 296, 327
HhaI GCGC 1 cut(s) 436
Hin1II CATG 2 cut(s) 416, 506
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 1 cut(s) 499
HpaII CCGG 3 cut(s) 89, 296, 327
Hpy166II GTNNAC 2 cut(s) 55, 427
Hpy188I TCNGA 4 cut(s) 10, 44, 98, 229
Hpy188III TCNNGA 3 cut(s) 368, 419, 503
Hpy8I GTNNAC 2 cut(s) 55, 427
HpyCH4III ACNGT 3 cut(s) 52, 124, 447
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 5 cut(s) 26, 182, 320, 470, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 287, 494
HpyF3I CTNAG 3 cut(s) 111, 226, 405
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 2 cut(s) 416, 506
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 3 cut(s) 310, 364, 409
LmnI GCTCC 1 cut(s) 485
Lsp1109I GCAGC 2 cut(s) 409, 490
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 312, 366, 411
MboI GATC 3 cut(s) 310, 364, 409
MboII GAAGA 1 cut(s) 470
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 283, 490
MluCI AATT 4 cut(s) 137, 148, 261, 389
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 6 cut(s) 25, 198, 270, 445, 468, 500
MseI TTAA 1 cut(s) 126
MspI CCGG 3 cut(s) 89, 296, 327
MspR9I CCNGG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 11, 287, 494
NciI CCSGG 1 cut(s) 327
NdeII GATC 3 cut(s) 310, 364, 409
NlaIII CATG 2 cut(s) 416, 506
NlaIV GGNNCC 2 cut(s) 366, 487
PagI TCATGA 1 cut(s) 502
PceI AGGCCT 2 cut(s) 244, 271
PfeI GAWTC 1 cut(s) 499
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 399, 480
PmaCI CACGTG 1 cut(s) 284
PmlI CACGTG 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 284
PspCI CACGTG 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 366, 487
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 398, 479
Sau3AI GATC 3 cut(s) 310, 364, 409
ScaI AGTACT 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 283, 490
SetI ASST 7 cut(s) 42, 60, 81, 106, 286, 402, 468
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 4 cut(s) 137, 148, 261, 389
SseBI AGGCCT 2 cut(s) 244, 271
SsiI CCGC 1 cut(s) 553
SspMI CTAG 1 cut(s) 549
StuI AGGCCT 2 cut(s) 244, 271
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 3 cut(s) 52, 124, 447
TaiI ACGT 1 cut(s) 286
TasI AATT 4 cut(s) 137, 148, 261, 389
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 2 cut(s) 397, 478
TspDTI ATGAA 3 cut(s) 130, 471, 528
TspGWI ACGGA 1 cut(s) 335
XapI RAATTY 1 cut(s) 261
XspI CTAG 1 cut(s) 549
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.