RchiOBHm_Chr4g0390871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002030
Physical Location & Seq
Reverse (-)
6139156 .. 6139731
576 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36379

Sequence Viewer

Length: 576 bp
ATGGCTTTAGAGGCAGAGTACTCTGCATTTAAGGAAAAGGTCAGACGAACAGTATACCTTGATCACCTTTCTCCACATCAGGTTACTGAAACGGTTGTCAGAAAAGCTATCTCTCAGTTTGGGACAGTTAAAAATGTTCAATTCATTCCAAATTACTTGGCAACAAAGAACATCCCCGTTTCTGCATTGATGGAGATGGAGAACCCGAGGCAGGCTAATGCTATTGTCTCAGAAATATCTCACAGGCCTTTTATGGTTGGTGGAATGCCCTGGCCTTTGAGGGCACGTGAAGCGAAACTTGAGATGTTTGAGGATCGTCCTGCAAAGCCTGGTAGAAAGATAGAGTTCCGTTGGGTGGAGACAAAGGATCCTGACTTTGAAGTGGCAAATAAATTCAAGCAGCTTGCTAAGGATCATGCTCTTGATGTTGACATTGCGCTCAATCAACAGTTGGAGGATGAAGAGAAGCTTGCAGAGAGGCAGCAAGTAGCCCTCAAGGTGAATCATGAGAAGTATGAAATGATATATGGCGTGATAACAGATGGCACAGCATTATCACATTCCAGTTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

191

Amino Acids

21.95

Weight (kDa)

6.61

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 19 - 82 5e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AclWI GGATC 4 cut(s) 321, 362, 375, 420
AcsI RAATTY 1 cut(s) 392
AcvI CACGTG 1 cut(s) 287
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 211, 355
AgsI TTSAA 3 cut(s) 140, 380, 397
AjnI CCWGG 2 cut(s) 269, 328
AluBI AGCT 3 cut(s) 107, 403, 469
AluI AGCT 3 cut(s) 107, 403, 469
Alw26I GTCTC 2 cut(s) 232, 353
AlwI GGATC 4 cut(s) 321, 362, 375, 420
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 2 cut(s) 245, 272
ApeKI GCWGC 2 cut(s) 400, 481
ApoI RAATTY 1 cut(s) 392
AspLEI GCGC 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 56, 511
AvaI CYCGRG 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 286
BamHI GGATCC 1 cut(s) 367
BbrPI CACGTG 1 cut(s) 287
BbvI GCAGC 2 cut(s) 412, 493
BccI CCATC 3 cut(s) 184, 190, 536
BciT130I CCWGG 2 cut(s) 271, 330
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 232, 353
BisI GCNGC 2 cut(s) 401, 482
BlsI GCNGC 2 cut(s) 402, 483
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 271, 330
BmeT110I CYCGRG 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 2 cut(s) 271, 330
Bpu10I CCTNAGC 1 cut(s) 408
BpuEI CTTGAG 2 cut(s) 320, 479
BsaAI YACGTR 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 206, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 355
Bse1I ACTGG 1 cut(s) 564
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 2 cut(s) 271, 330
BseDI CCNNGG 2 cut(s) 206, 269
BseGI GGATG 2 cut(s) 171, 463
BseLI CCNNNNNNNGG 2 cut(s) 211, 355
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 2 cut(s) 128, 243
BseNI ACTGG 1 cut(s) 564
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 2 cut(s) 412, 493
BshFI GGCC 2 cut(s) 247, 274
BsiHKCI CYCGRG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 2 cut(s) 211, 355
BsmAI GTCTC 2 cut(s) 232, 353
BsmFI GGGAC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 2 cut(s) 247, 274
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 4 cut(s) 61, 313, 367, 412
BspANI GGCC 2 cut(s) 247, 274
BspCNI CTCAG 2 cut(s) 127, 242
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 4 cut(s) 321, 362, 375, 420
BsrDI GCAATG 1 cut(s) 432
BsrI ACTGG 1 cut(s) 564
BssECI CCNNGG 2 cut(s) 206, 269
BssMI GATC 4 cut(s) 61, 313, 367, 412
BssNAI GTATAC 1 cut(s) 55
Bst1107I GTATAC 1 cut(s) 55
Bst2UI CCWGG 2 cut(s) 271, 330
Bst4CI ACNGT 4 cut(s) 52, 94, 127, 450
Bst6I CTCTTC 1 cut(s) 456
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 3 cut(s) 213, 405, 471
BstDEI CTNAG 3 cut(s) 114, 229, 408
BstF5I GGATG 2 cut(s) 171, 463
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 4 cut(s) 64, 316, 370, 415
BstMAI GTCTC 2 cut(s) 232, 353
BstMBI GATC 4 cut(s) 61, 313, 367, 412
BstMWI GCNNNNNNNGC 2 cut(s) 11, 290
BstNI CCWGG 2 cut(s) 271, 330
BstSCI CCNGG 2 cut(s) 269, 328
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 412, 493
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BstZ17I GTATAC 1 cut(s) 55
BsuRI GGCC 2 cut(s) 247, 274
BtsCI GGATG 2 cut(s) 171, 463
Cac8I GCNNGC 3 cut(s) 213, 405, 471
CciI TCATGA 1 cut(s) 505
CfoI GCGC 1 cut(s) 439
Csp6I GTAC 1 cut(s) 19
CviAII CATG 2 cut(s) 416, 506
CviJI RGCY 9 cut(s) 5, 107, 215, 247, 274, 328, 403, 469, 491
CviKI_1 RGCY 9 cut(s) 5, 107, 215, 247, 274, 328, 403, 469, 491
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 3 cut(s) 114, 229, 408
DpnI GATC 4 cut(s) 63, 315, 369, 414
DpnII GATC 4 cut(s) 61, 313, 367, 412
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco147I AGGCCT 1 cut(s) 247
Eco72I CACGTG 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 269, 328
FaeI CATG 2 cut(s) 419, 509
FaiI YATR 7 cut(s) 55, 254, 417, 507, 516, 526, 528
FalI AAGNNNNNCTT 4 cut(s) 282, 314, 453, 485
FaqI GGGAC 1 cut(s) 136
FatI CATG 2 cut(s) 415, 505
FbaI TGATCA 1 cut(s) 61
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 401, 482
FokI GGATG 2 cut(s) 158, 470
Fsp4HI GCNGC 2 cut(s) 401, 482
GlaI GCGC 1 cut(s) 438
GluI GCNGC 2 cut(s) 401, 482
HaeIII GGCC 2 cut(s) 247, 274
HhaI GCGC 1 cut(s) 439
Hin1II CATG 2 cut(s) 419, 509
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 1 cut(s) 502
HphI GGTGA 2 cut(s) 56, 511
Hpy166II GTNNAC 2 cut(s) 55, 430
Hpy188I TCNGA 3 cut(s) 44, 101, 232
Hpy188III TCNNGA 3 cut(s) 371, 422, 506
Hpy8I GTNNAC 2 cut(s) 55, 430
HpyCH4III ACNGT 4 cut(s) 52, 94, 127, 450
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 5 cut(s) 26, 185, 323, 473, 570
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 290
HpyF3I CTNAG 3 cut(s) 114, 229, 408
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 2 cut(s) 419, 509
HspAI GCGC 1 cut(s) 437
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 4 cut(s) 61, 313, 367, 412
LpnPI CCDG 9 cut(s) 65, 197, 229, 256, 283, 315, 333, 342, 384
Lsp1109I GCAGC 2 cut(s) 412, 493
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 82
MalI GATC 4 cut(s) 63, 315, 369, 414
MboI GATC 4 cut(s) 61, 313, 367, 412
MboII GAAGA 1 cut(s) 473
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 3 cut(s) 140, 151, 392
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 7 cut(s) 4, 201, 273, 304, 448, 471, 503
MseI TTAA 2 cut(s) 30, 129
MspR9I CCNGG 2 cut(s) 271, 330
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 2 cut(s) 271, 330
MwoI GCNNNNNNNGC 2 cut(s) 11, 290
NdeII GATC 4 cut(s) 61, 313, 367, 412
NlaIII CATG 2 cut(s) 419, 509
NlaIV GGNNCC 1 cut(s) 369
PagI TCATGA 1 cut(s) 505
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 502
PkrI GCNGC 2 cut(s) 402, 483
PmaCI CACGTG 1 cut(s) 287
PmlI CACGTG 1 cut(s) 287
Ppu21I YACGTR 1 cut(s) 287
Psp6I CCWGG 2 cut(s) 269, 328
PspCI CACGTG 1 cut(s) 287
PspGI CCWGG 2 cut(s) 269, 328
PspN4I GGNNCC 1 cut(s) 369
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 30, 129
SatI GCNGC 2 cut(s) 401, 482
Sau3AI GATC 4 cut(s) 61, 313, 367, 412
ScaI AGTACT 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 271, 330
SduI GDGCHC 1 cut(s) 286
SetI ASST 9 cut(s) 42, 60, 69, 84, 109, 289, 405, 471, 501
SmlI CTYRAG 2 cut(s) 299, 494
SmoI CTYRAG 2 cut(s) 299, 494
Sse9I AATT 3 cut(s) 140, 151, 392
SseBI AGGCCT 1 cut(s) 247
StuI AGGCCT 1 cut(s) 247
StyD4I CCNGG 2 cut(s) 269, 328
TaaI ACNGT 4 cut(s) 52, 94, 127, 450
TaiI ACGT 1 cut(s) 289
TasI AATT 3 cut(s) 140, 151, 392
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 2 cut(s) 30, 129
Tru9I TTAA 2 cut(s) 30, 129
TseI GCWGC 2 cut(s) 400, 481
TspDTI ATGAA 3 cut(s) 133, 474, 531
TspGWI ACGGA 1 cut(s) 338
XapI RAATTY 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.