Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002030

Physical Location & Seq

Genomic Coordinates Reverse (-)

19918864 .. 19919408

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1210800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAGGACTTCAAAATTTGAGTATGCTGCATTTGAGGAGAAGGTTAAACGAACTGTTTACCTTGATAACATCTCACCCCAGGTCACCGAATCTATTGTGAAAACTGCACTTTCTCAGTTTGGGACTGTGAAAAGTAACGTCCTACACTGTGCACTGGTGGAGATGGAGAATCCGAAGGAAGCTAGTGTCATTGGCAAGGAGATAACGGAATTCCGTTTCATGATTTTGGGGATACCAAGGCTTGTGAGGGCACTTTCTGCTGCGGCCAACATGTTTGATGAGCGCCCTACTATGCCTAGAAGACAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

104

Amino Acids

11.74

Weight (kDa)

9.25

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05970 AT1G05970
fragaria_vesca	FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g03700 FvH4_4g03700
malus_domestica	MD13G1208600.v1.1 MD16G1210800.v1.1
prunus_persica	Prupe.1G032600_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1
pyrus_communis	pycom13g18070
rosa_chinensis	RchiOBHm_Chr4g0390851 RchiOBHm_Chr4g0390871 RchiOBHm_Chr4g0390901 RchiOBHm_Chr4g0390961 RchiOBHm_Chr4g0393311
rosa_laevigata	RLG00000009765 RLG00000009907
rosa_multiflora	Rmu_sc0000171.1_g000001 Rmu_sc0001590.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336820 Rroxscaffold_5G00338300
rosa_rugosa	Rorug03G0332400 Rorug03G0332500 Rorug04G0001900
rosa_samantha	Rh4AG033900 Rh4AG046600 Rh4BG027600 Rh4BG027900 Rh4BG028300 Rh4BG042200 Rh4CG037300 Rh4CG049700 Rh4DG031200 Rh4DG044000
rosa_wichuraiana	Rw4G002590 Rw4G002630 Rw4G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	14, 209
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	154
Alw44I	GTGCAC	1 cut(s)	150
AoxI	GGCC	1 cut(s)	264
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	26, 260
ApoI	RAATTY	2 cut(s)	14, 209
AspLEI	GCGC	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	66, 76
BaeGI	GKGCMC	2 cut(s)	154, 253
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	13, 247
BccI	CCATC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	183, 297
BfoI	RGCGCY	1 cut(s)	286
BfuI	GTATCC	1 cut(s)	225
BisI	GCNGC	3 cut(s)	27, 261, 264
BlsI	GCNGC	3 cut(s)	28, 262, 265
Bme1390I	CCNGG	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	78, 236
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	78, 236
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	2 cut(s)	154, 253
BseXI	GCAGC	2 cut(s)	13, 247
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	154, 253
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	78, 236
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	3 cut(s)	55, 127, 149
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	114
BstEII	GGTNACC	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	274
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	2 cut(s)	154, 253
BstV1I	GCAGC	2 cut(s)	13, 247
BstV2I	GAAGAC	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	145, 152
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	1 cut(s)	285
CviAII	CATG	2 cut(s)	220, 271
CviJI	RGCY	3 cut(s)	182, 241, 266
CviKI_1	RGCY	3 cut(s)	182, 241, 266
DdeI	CTNAG	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	82
EcoO65I	GGTNACC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	2 cut(s)	223, 274
FaiI	YATR	4 cut(s)	24, 221, 272, 293
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	2 cut(s)	219, 270
Fnu4HI	GCNGC	3 cut(s)	27, 261, 264
Fsp4HI	GCNGC	3 cut(s)	27, 261, 264
FspBI	CTAG	2 cut(s)	183, 297
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	3 cut(s)	27, 261, 264
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	223, 274
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	2 cut(s)	89, 169
HphI	GGTGA	2 cut(s)	66, 76
Hpy166II	GTNNAC	2 cut(s)	58, 152
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	2 cut(s)	58, 152
HpyAV	CCTTC	2 cut(s)	34, 169
HpyCH4III	ACNGT	3 cut(s)	55, 127, 149
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	29, 107, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	223, 274
HspAI	GCGC	1 cut(s)	283
LpnPI	CCDG	3 cut(s)	65, 92, 140
Lsp1109I	GCAGC	2 cut(s)	13, 247
MaeI	CTAG	2 cut(s)	183, 297
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	82, 134
MboII	GAAGA	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	154, 253
MluCI	AATT	2 cut(s)	14, 209
MnlI	CCTC	2 cut(s)	28, 240
MseI	TTAA	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	223, 274
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	274
PagI	TCATGA	1 cut(s)	219
PciI	ACATGT	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	89, 169
PkrI	GCNGC	3 cut(s)	28, 262, 265
PscI	ACATGT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	3 cut(s)	27, 261, 264
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	154, 253
SetI	ASST	5 cut(s)	45, 63, 84, 141, 184
Sse9I	AATT	2 cut(s)	14, 209
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	183, 297
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	3 cut(s)	55, 127, 149
TaiI	ACGT	1 cut(s)	141
TasI	AATT	2 cut(s)	14, 209
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	89, 169
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	2 cut(s)	152, 159
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	26, 260
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	208
TspGWI	ACGGA	2 cut(s)	203, 221
TspRI	CASTG	2 cut(s)	152, 159
VneI	GTGCAC	1 cut(s)	150
XapI	RAATTY	2 cut(s)	14, 209
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	2 cut(s)	183, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.