Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002030

Physical Location & Seq

Genomic Coordinates Reverse (-)

6127444 .. 6127791

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTTGGTGGAATTCCAAGGCCTGTGAGGGCACGTGAAGCGAAACCGGAGATGTTTGAGGATCGTCCTGCAAAGCCTGGTAGAAAGATAGAGTTCCGTTGGGTGGAGACAAAGGATCCTGACTTTGAAGTGGCAAATAAATTGAAGCAGCTTGCCAAGGATCATGCTCTTGAAGTTGACATTGCGCTCAATCAACAGTTGGAGGATGAAGAGAAGCTTGCAGAGAGGAAGCAAGGAGCCCTCAAGGCGAATCATGAGAAGTATGAAACGATAAATGGCGTGATAACAGATGGAATTGCTAAGCGTTTGGCACAGCATTATCGCATTCCAGTTGCAGATGAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

115

Amino Acids

13.24

Weight (kDa)

6.32

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05970 AT1G05970
fragaria_vesca	FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g02890 FvH4_4g03700 FvH4_4g03700
malus_domestica	MD13G1208600.v1.1 MD16G1210800.v1.1
prunus_persica	Prupe.1G032600_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1 Prupe.3G140200_v2.0.a1
pyrus_communis	pycom13g18070
rosa_chinensis	RchiOBHm_Chr4g0390851 RchiOBHm_Chr4g0390871 RchiOBHm_Chr4g0390901 RchiOBHm_Chr4g0390961 RchiOBHm_Chr4g0393311
rosa_laevigata	RLG00000009765 RLG00000009907
rosa_multiflora	Rmu_sc0000171.1_g000001 Rmu_sc0001590.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336820 Rroxscaffold_5G00338300
rosa_rugosa	Rorug03G0332400 Rorug03G0332500 Rorug04G0001900
rosa_samantha	Rh4AG033900 Rh4AG046600 Rh4BG027600 Rh4BG027900 Rh4BG028300 Rh4BG042200 Rh4CG037300 Rh4CG049700 Rh4DG031200 Rh4DG044000
rosa_wichuraiana	Rw4G002590 Rw4G002630 Rw4G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	69, 110, 123, 168
AcsI	RAATTY	1 cut(s)	12
AcvI	CACGTG	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	128, 145, 173
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	2 cut(s)	151, 217
AluI	AGCT	2 cut(s)	151, 217
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	4 cut(s)	69, 110, 123, 168
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	34
BamHI	GGATCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	241
BbrPI	CACGTG	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	101
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	1 cut(s)	149
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	117, 238
BmrFI	CCNGG	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	17, 156
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	17, 156
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	34, 241
Bsp143I	GATC	3 cut(s)	61, 115, 160
Bsp1720I	GCTNAGC	1 cut(s)	300
BspANI	GGCC	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	117, 238
BspPI	GGATC	4 cut(s)	69, 110, 123, 168
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	17, 156
BssMI	GATC	3 cut(s)	61, 115, 160
BssT1I	CCWWGG	2 cut(s)	17, 156
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	153, 219
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	3 cut(s)	64, 118, 163
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	61, 115, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 245
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	153, 219
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	187
CviAII	CATG	2 cut(s)	164, 254
CviJI	RGCY	5 cut(s)	22, 76, 151, 217, 239
CviKI_1	RGCY	5 cut(s)	22, 76, 151, 217, 239
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	3 cut(s)	63, 117, 162
DpnII	GATC	3 cut(s)	61, 115, 160
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	17, 156
Eco147I	AGGCCT	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	241
Eco72I	CACGTG	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	2 cut(s)	17, 156
EcoT38I	GRGCYC	1 cut(s)	241
ErhI	CCWWGG	2 cut(s)	17, 156
FaeI	CATG	2 cut(s)	167, 257
FaiI	YATR	3 cut(s)	165, 255, 264
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	2 cut(s)	163, 253
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	149
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	167, 257
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188III	TCNNGA	3 cut(s)	119, 170, 254
Hpy8I	GTNNAC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	71, 221, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 245
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	167, 257
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	3 cut(s)	61, 115, 160
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	7 cut(s)	36, 60, 63, 81, 90, 132, 342
Lsp1109I	GCAGC	1 cut(s)	160
MaeII	ACGT	1 cut(s)	34
MalI	GATC	3 cut(s)	63, 117, 162
MboI	GATC	3 cut(s)	61, 115, 160
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	34, 241
MluCI	AATT	3 cut(s)	12, 140, 294
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	21, 52, 196, 219, 251
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	38, 245
NdeII	GATC	3 cut(s)	61, 115, 160
NlaIII	CATG	2 cut(s)	167, 257
NlaIV	GGNNCC	2 cut(s)	117, 238
PagI	TCATGA	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	22
PctI	GAATGC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	150
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	76
PspCI	CACGTG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	117, 238
PsuI	RGATCY	1 cut(s)	115
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	3 cut(s)	61, 115, 160
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	34, 241
SetI	ASST	3 cut(s)	37, 153, 219
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	12, 140, 294
SseBI	AGGCCT	1 cut(s)	22
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	2 cut(s)	17, 156
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	37
TasI	AATT	3 cut(s)	12, 140, 294
TfiI	GAWTC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	222, 279
TspGWI	ACGGA	1 cut(s)	86
XapI	RAATTY	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.