Rorug03G0332500

Glu S.griseus protease inhibitor-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000470
Physical Location & Seq
Reverse (-)
38716589 .. 38720267
3679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0332500.1

Sequence Viewer

Length: 669 bp
ATGAAGTCTTGTATAGCACTTGCTGGCCTTGTGGTCTTCCTCTGTGCGATCTTTGAGTTGGGGCTTTGCAGGGAGGACCCTCTCATCAAAATGAATCTGGGTGGTTTTAAAGATTCTCGCGCTTCTCAGAACAGCGCGGAAAGTATCGCTCTCTTTGCTGTCCAAGAACACAACAAGCAACAGAATGGTGTGCTTGAGTTTGCGAGGGTGTTGAATTCAAGGGAACAAGTGGTTGCTGGTAAGATTTACCATCTCACGCTGGAAGCTGTTGACGCTGGTATCAACAAAATATATGAAGCTAAGGTCTGGGTGAAACCATGGATCAACTTCAAGCAGTTGCAGGAGTTTAAGCTCGCACACCATGTCCCTTCCTTCACTTCTTCGGACCTCGGCCTTAAACCAGGATGGCGACCAGTGCCGATTCATGATCCCGAGGTCCAAGATGCAGCAACTCATGCTGTTCAGTCCCTTCAGCTCCGATCAAATTCGTTGTACCCATATGAACTTGTTGAGATCCTCCTAGCTAAGGCTAAGGTTATTGAAGATTATGCCAGATTTCATTTGCTTTTGAAGGTGAAGAGGGGAATACAAGAACATAAGCTCTGGGTTGAAGTAAATAAGAACATTGAAGGAAGGTTTTATTCGAGTGGGATGGAAAGAGATCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

222

Amino Acids

25.21

Weight (kDa)

8.68

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 34 - 119 5.2e-13 Cystatin domain
SQAPI PF16845 44 - 117 2.5e-20 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 120, 137
AciI CCGC 1 cut(s) 137
AclWI GGATC 3 cut(s) 329, 422, 508
AcsI RAATTY 2 cut(s) 214, 484
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 1 cut(s) 526
AgsI TTSAA 7 cut(s) 214, 219, 331, 542, 571, 611, 629
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 6 cut(s) 266, 299, 352, 475, 524, 601
AluI AGCT 6 cut(s) 266, 299, 352, 475, 524, 601
AlwI GGATC 3 cut(s) 329, 422, 508
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 2 cut(s) 25, 391
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 2 cut(s) 214, 484
AspLEI GCGC 2 cut(s) 122, 137
AspS9I GGNCC 3 cut(s) 76, 385, 436
AsuHPI GGTGA 2 cut(s) 322, 586
AvaI CYCGRG 1 cut(s) 431
AvaII GGWCC 3 cut(s) 76, 385, 436
BaeI ACNNNNGTAYC 2 cut(s) 262, 295
BbsI GAAGAC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 458
BccI CCATC 3 cut(s) 258, 399, 646
BciT130I CCWGG 1 cut(s) 402
BfaI CTAG 1 cut(s) 521
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 3 cut(s) 76, 385, 436
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 3 cut(s) 76, 385, 436
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 28
Bpu10I CCTNAGC 3 cut(s) 300, 525, 531
BpuEI CTTGAG 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 317, 388, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse1I ACTGG 1 cut(s) 413
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 3 cut(s) 317, 388, 432
BseGI GGATG 2 cut(s) 410, 657
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 413
BseXI GCAGC 1 cut(s) 458
Bsh1236I CGCG 2 cut(s) 120, 137
BshFI GGCC 2 cut(s) 27, 393
BsiHKCI CYCGRG 1 cut(s) 431
BslFI GGGAC 2 cut(s) 350, 451
BslI CCNNNNNNNGG 1 cut(s) 526
BsmFI GGGAC 2 cut(s) 350, 451
BsnI GGCC 2 cut(s) 27, 393
BsoBI CYCGRG 1 cut(s) 431
Bsp143I GATC 6 cut(s) 48, 321, 427, 479, 513, 661
Bsp19I CCATGG 1 cut(s) 317
BspACI CCGC 1 cut(s) 137
BspANI GGCC 2 cut(s) 27, 393
BspCNI CTCAG 1 cut(s) 139
BspFNI CGCG 2 cut(s) 120, 137
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 3 cut(s) 329, 422, 508
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 3 cut(s) 317, 388, 432
BssMI GATC 6 cut(s) 48, 321, 427, 479, 513, 661
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 402
Bst6I CTCTTC 1 cut(s) 572
BstAPI GCANNNNNTGC 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 25, 354
BstDEI CTNAG 4 cut(s) 126, 300, 525, 531
BstDSI CCRYGG 1 cut(s) 317
BstENI CCTNNNNNAGG 1 cut(s) 524
BstF5I GGATG 2 cut(s) 410, 657
BstFNI CGCG 2 cut(s) 120, 137
BstHHI GCGC 2 cut(s) 122, 137
BstKTI GATC 6 cut(s) 51, 324, 430, 482, 516, 664
BstMBI GATC 6 cut(s) 48, 321, 427, 479, 513, 661
BstMWI GCNNNNNNNGC 4 cut(s) 155, 272, 415, 455
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 400
BstUI CGCG 2 cut(s) 120, 137
BstV1I GCAGC 1 cut(s) 458
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 513
BstYI RGATCY 1 cut(s) 513
BsuRI GGCC 2 cut(s) 27, 393
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 2 cut(s) 410, 657
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 25, 354
CciI TCATGA 1 cut(s) 424
CfoI GCGC 2 cut(s) 122, 137
Cfr13I GGNCC 3 cut(s) 76, 385, 436
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 493
CviAII CATG 4 cut(s) 318, 362, 425, 455
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 4 cut(s) 126, 300, 525, 531
DpnI GATC 6 cut(s) 50, 323, 429, 481, 515, 663
DpnII GATC 6 cut(s) 48, 321, 427, 479, 513, 661
DraI TTTAAA 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco130I CCWWGG 1 cut(s) 317
Eco47I GGWCC 3 cut(s) 76, 385, 436
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 4 cut(s) 321, 365, 428, 458
FaqI GGGAC 2 cut(s) 350, 451
FatI CATG 4 cut(s) 317, 361, 424, 454
FauNDI CATATG 1 cut(s) 499
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 2 cut(s) 417, 664
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 1 cut(s) 521
GlaI GCGC 2 cut(s) 121, 136
GluI GCNGC 1 cut(s) 447
HaeIII GGCC 2 cut(s) 27, 393
HgaI GACGC 1 cut(s) 281
HhaI GCGC 2 cut(s) 122, 137
Hin1II CATG 4 cut(s) 321, 365, 428, 458
Hin6I GCGC 2 cut(s) 120, 135
HinP1I GCGC 2 cut(s) 120, 135
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 3 cut(s) 94, 113, 421
HphI GGTGA 2 cut(s) 322, 586
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 3 cut(s) 129, 385, 479
Hpy188III TCNNGA 2 cut(s) 425, 431
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 6 cut(s) 378, 382, 479, 565, 623, 627
HpyCH4V TGCA 3 cut(s) 69, 340, 446
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 272, 415, 455
HpyF3I CTNAG 4 cut(s) 126, 300, 525, 531
Hsp92II CATG 4 cut(s) 321, 365, 428, 458
HspAI GCGC 2 cut(s) 120, 135
Kzo9I GATC 6 cut(s) 48, 321, 427, 479, 513, 661
LmnI GCTCC 1 cut(s) 480
Lsp1109I GCAGC 1 cut(s) 458
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 521
MalI GATC 6 cut(s) 50, 323, 429, 481, 515, 663
MboI GATC 6 cut(s) 48, 321, 427, 479, 513, 661
MboII GAAGA 4 cut(s) 28, 372, 554, 589
MflI RGATCY 1 cut(s) 513
MluCI AATT 2 cut(s) 214, 484
MnlI CCTC 8 cut(s) 50, 67, 90, 198, 398, 427, 527, 573
MseI TTAA 3 cut(s) 108, 348, 396
MslI CAYNNNNRTG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
MvnI CGCG 2 cut(s) 120, 137
MwoI GCNNNNNNNGC 4 cut(s) 155, 272, 415, 455
NcoI CCATGG 1 cut(s) 317
NdeI CATATG 1 cut(s) 499
NdeII GATC 6 cut(s) 48, 321, 427, 479, 513, 661
NlaIII CATG 4 cut(s) 321, 365, 428, 458
NlaIV GGNNCC 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 369
PagI TCATGA 1 cut(s) 424
PfeI GAWTC 3 cut(s) 94, 113, 421
PkrI GCNGC 1 cut(s) 448
PpuMI RGGWCCY 1 cut(s) 76
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 3 cut(s) 76, 385, 436
PspPPI RGGWCCY 1 cut(s) 76
PsuI RGATCY 1 cut(s) 513
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 3 cut(s) 108, 348, 396
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 6 cut(s) 48, 321, 427, 479, 513, 661
Sau96I GGNCC 3 cut(s) 76, 385, 436
ScrFI CCNGG 1 cut(s) 402
SfaNI GCATC 1 cut(s) 433
SinI GGWCC 3 cut(s) 76, 385, 436
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 214, 484
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 317
TaqI TCGA 1 cut(s) 644
TasI AATT 2 cut(s) 214, 484
TfiI GAWTC 3 cut(s) 94, 113, 421
Tru1I TTAA 3 cut(s) 108, 348, 396
Tru9I TTAA 3 cut(s) 108, 348, 396
TscAI CASTG 1 cut(s) 420
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 6 cut(s) 17, 107, 309, 413, 516, 548
TspRI CASTG 1 cut(s) 420
VpaK11BI GGWCC 3 cut(s) 76, 385, 436
XagI CCTNNNNNAGG 1 cut(s) 524
XapI RAATTY 2 cut(s) 214, 484
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.