Rh4BG027500

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000470
Physical Location & Seq
Forward (+)
4969893 .. 4982962
13070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG027500.1

Sequence Viewer

Length: 228 bp
ATGTCTGATCAATGCGAAGGTAAGGGTTCATGGCCTGAACTGTTGGGAGCTCAGGGAACAGTTGCAAAGGCAACAATTGAGAGCGAAAACTCTTTAGTCGAGGCAGTGATCGTGCTAGAAGGATCATTTGTCACTCAAGATATCCGGTGTGATAGGGTTCGTGTTTGGGTCGATACAGATGGCATTGTTACCAGGGTCCCCTTCATTATAACTCTCGCTGAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

75

Amino Acids

8.12

Weight (kDa)

4.31

Isoelectric Point (pI)

20.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 69 3e-24 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AclWI GGATC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 1 cut(s) 52
AlwI GGATC 1 cut(s) 130
AoxI GGCC 2 cut(s) 32, 222
AspS9I GGNCC 1 cut(s) 196
AvaII GGWCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 52
BbvCI CCTCAGC 1 cut(s) 219
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 193
BclI TGATCA 1 cut(s) 7
BfaI CTAG 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 197, 198
BmrFI CCNGG 1 cut(s) 193
Bpu10I CCTNAGC 2 cut(s) 51, 219
BpuEI CTTGAG 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 144
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 192
BseMII CTCAG 2 cut(s) 65, 210
BshFI GGCC 2 cut(s) 34, 224
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 34, 224
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 3 cut(s) 7, 108, 122
BspANI GGCC 2 cut(s) 34, 224
BspCNI CTCAG 2 cut(s) 64, 211
BspLI GGNNCC 2 cut(s) 197, 198
BspPI GGATC 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 3 cut(s) 7, 108, 122
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 42, 61
BstDEI CTNAG 2 cut(s) 51, 219
BstKTI GATC 3 cut(s) 10, 111, 125
BstMBI GATC 3 cut(s) 7, 108, 122
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BsuRI GGCC 2 cut(s) 34, 224
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 196
CviAII CATG 1 cut(s) 30
CviJI RGCY 3 cut(s) 34, 50, 224
CviKI_1 RGCY 3 cut(s) 34, 50, 224
DdeI CTNAG 2 cut(s) 51, 219
DpnI GATC 3 cut(s) 9, 110, 124
DpnII GATC 3 cut(s) 7, 108, 122
Ecl136II GAGCTC 1 cut(s) 50
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 52
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 191
EcoRV GATATC 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 1 cut(s) 33
FaiI YATR 2 cut(s) 31, 209
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 29
FbaI TGATCA 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 52
FspBI CTAG 1 cut(s) 116
HaeIII GGCC 2 cut(s) 34, 224
HapII CCGG 1 cut(s) 145
Hin1II CATG 1 cut(s) 33
HpaII CCGG 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 11, 113, 211
HpyCH4III ACNGT 2 cut(s) 42, 61
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 51, 219
Hsp92II CATG 1 cut(s) 33
KflI GGGWCCC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 3 cut(s) 7, 108, 122
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 38, 48, 158, 178, 205
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 130, 187
MalI GATC 3 cut(s) 9, 110, 124
MboI GATC 3 cut(s) 7, 108, 122
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 1 cut(s) 75
MnlI CCTC 2 cut(s) 94, 214
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 193
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 193
NdeII GATC 3 cut(s) 7, 108, 122
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 2 cut(s) 197, 198
NmuCI GTSAC 1 cut(s) 130
PceI AGGCCT 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 196
PsiI TTATAA 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 197, 198
PspPI GGNCC 1 cut(s) 196
PspPPI RGGWCCY 1 cut(s) 196
SacI GAGCTC 1 cut(s) 52
Sau3AI GATC 3 cut(s) 7, 108, 122
Sau96I GGNCC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 1 cut(s) 52
SetI ASST 2 cut(s) 22, 52
SinI GGWCC 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 1 cut(s) 75
SseBI AGGCCT 1 cut(s) 224
SspMI CTAG 1 cut(s) 116
SstI GAGCTC 1 cut(s) 52
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 42, 61
TaqI TCGA 2 cut(s) 99, 171
TasI AATT 1 cut(s) 75
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 18, 193
TspRI CASTG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 196
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.