Rw4G002640

Glu S.griseus protease inhibitor-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000470
Physical Location & Seq
Forward (+)
5197867 .. 5198216
350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002640.1

Sequence Viewer

Length: 219 bp
ATGGGTTCAGAATGTGAAGGTAAAGGTTCATGGCCGGAGCTTGTTGGAGAGCATGGGGAGGTTGCCAAAGGGAAAATTGAGAGAGAGAACCCTAATGTGACTGCTAGGATTGTAGTTGACGGAGAAATGTACGTCATTACCGACTACGATTGCTTTAGGGTTTGGATTTGGGTTGACAAAGACGATGGAACTGTTGTAAAAACTCCGATTATCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

72

Amino Acids

8.03

Weight (kDa)

4.55

Isoelectric Point (pI)

10.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 72 4.5e-23 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 32
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 212
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AoxI GGCC 1 cut(s) 32
BccI CCATC 1 cut(s) 179
BfaI CTAG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 212
BshFI GGCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 212
BsnI GGCC 1 cut(s) 34
BspANI GGCC 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 193
BsuRI GGCC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 30, 53
CviJI RGCY 2 cut(s) 34, 40
CviKI_1 RGCY 2 cut(s) 34, 40
CviQI GTAC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 32
FaeI CATG 2 cut(s) 33, 56
FaiI YATR 2 cut(s) 31, 54
FatI CATG 2 cut(s) 29, 52
FspBI CTAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 35
Hin1II CATG 2 cut(s) 33, 56
HincII GTYRAC 2 cut(s) 118, 175
HindII GTYRAC 2 cut(s) 118, 175
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 118, 175
Hpy188I TCNGA 2 cut(s) 10, 207
Hpy8I GTNNAC 2 cut(s) 118, 175
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 2 cut(s) 33, 56
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 1 cut(s) 48
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 97
MluCI AATT 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 1 cut(s) 52
MseI TTAA 1 cut(s) 217
MspI CCGG 1 cut(s) 35
NlaIII CATG 2 cut(s) 33, 56
NmuCI GTSAC 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 138
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 217
SetI ASST 5 cut(s) 22, 28, 42, 63, 135
SgeI CNNG 5 cut(s) 42, 47, 53, 65, 117
Sse9I AATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 135
TasI AATT 1 cut(s) 75
Tru1I TTAA 1 cut(s) 217
Tru9I TTAA 1 cut(s) 217
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 135
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.