Rorug03G0332300

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000470
Physical Location & Seq
Forward (+)
38618965 .. 38620983
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0332300.1

Sequence Viewer

Length: 1143 bp
ATGGAGGGAAATGGCGGGTGTTGTCGAAGTTTCATTCAGAGTTCAAAGCCATACATAGCTATGATTTCTCTGCAATTCGGCTATGCCGGAATGAACATCATCACTAAGGTTTCGCTCAACCGTGGAATGAGCCACTACGTGCTTGTTGTTTACAGGCACGCCTTCGCCACCGCAGCTATTGCACCATTTGCTCTTGTTCTTGAGAGGAAAATAAGACCAAAGATTACATTCCCCATTTTCATGCAACTTTTTGTACTGGGTCTTCTTGGGCCGGTCATTGATCAAAACTTCTACTACGCCGGATTGAAGTTTACATCCCCGACCTTCTCTTGTGCCATGAGTAACATGCTTCCGGCAATGACATTCGTCATGGCTGTCCTTTGCAGGATGGAGAAGCTGGACATGAAGAAGGTTAGATGCCAAGCGAAGCTGATAGGCACAATTGTGACAGTGGCCGGAGCCATGCTGATGACGTTGTACAAAGGAAACATCATTAACTTTCCATGGTCGGGTCACTTGGCAAACTCCAATAATGCCCCTAGTGCAAATAATAATGAGGACAAGGACTGGCTCAAGGGATCCATTCTGCTCATCTTGGCCACCCTTGCCTGGGCTTCTTTCTTTATCATTCAGGCAGTGACACAGAAGAGGTACCAAGCTCCGTTATCCCTCACCGCAATCGTCTGCTTCTTGGGAACTCTGCAGTCCATAGCTGTTACCTTTGTCATGGAACACAAGCCGGCGGCTTGGACCATTGGTTGGGACATAAACCTTCTTGCTGCTGCATATGCTGGCATAGTTTCATCGAGCCTTGCATACTACGTTCAAGGGCTGGTGATGGAGAAAACAGGTCCTGTTTTTGTCACCGCTTTCAGCCCTCTTATGATGATCATTGTGGCTGTCATGGGTTCTTTCATCCTTGCTGAGAAGATCTATCTTGGAGGTATTCTTGGTGCTGTACTAATTGTCATGGGACTCTACTCGGTTCTCTGGGGCAAGTACAAAGAGTACAAAGAAAAAGAAGCTGAGAGCTTTAATATTCCTCAAGCAATAAAGGGTACTACAGCTACTACTGGAGACATCACTACTGATTTACAAGACATTGAAATACAAAAGAGCAGCCAACCTAACCCCAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

380

Amino Acids

41.7

Weight (kDa)

9.21

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 18 - 158 1.7e-12 EamA-like transporter family
EamA PF00892 192 - 330 2.8e-14 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 651
AccB7I CCANNNNNTGG 1 cut(s) 759
AciI CCGC 5 cut(s) 15, 171, 675, 743, 867
AclWI GGATC 2 cut(s) 573, 586
AcoI YGGCCR 2 cut(s) 453, 597
AdeI CACNNNGTG 1 cut(s) 139
AfaI GTAC 7 cut(s) 255, 479, 653, 960, 1001, 1010, 1060
AfiI CCNNNNNNNGG 4 cut(s) 509, 609, 610, 759
AgsI TTSAA 4 cut(s) 45, 307, 827, 1106
AjnI CCWGG 1 cut(s) 608
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 9 cut(s) 59, 176, 397, 430, 659, 713, 1025, 1032, 1067
AluI AGCT 9 cut(s) 59, 176, 397, 430, 659, 713, 1025, 1032, 1067
Alw26I GTCTC 1 cut(s) 1071
AlwI GGATC 2 cut(s) 573, 586
AlwNI CAGNNNCTG 1 cut(s) 854
AoxI GGCC 3 cut(s) 269, 453, 597
ApeKI GCWGC 4 cut(s) 173, 779, 782, 1119
Asp718I GGTACC 1 cut(s) 651
AspS9I GGNCC 3 cut(s) 269, 750, 851
AsuHPI GGTGA 3 cut(s) 664, 847, 856
AvaII GGWCC 2 cut(s) 750, 851
BalI TGGCCA 1 cut(s) 599
BamHI GGATCC 1 cut(s) 578
BanI GGYRCC 1 cut(s) 651
BarI GAAGNNNNNNTAC 2 cut(s) 246, 278
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 4 cut(s) 185, 766, 769, 1131
BccI CCATC 2 cut(s) 382, 832
BciT130I CCWGG 1 cut(s) 610
BclI TGATCA 2 cut(s) 280, 888
BcoDI GTCTC 1 cut(s) 1071
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 2 cut(s) 701, 1062
BglII AGATCT 1 cut(s) 930
BisI GCNGC 5 cut(s) 174, 744, 780, 783, 1120
BlsI GCNGC 5 cut(s) 175, 745, 781, 784, 1121
Bme1390I CCNGG 1 cut(s) 610
Bme18I GGWCC 2 cut(s) 750, 851
BmgT120I GGNCC 3 cut(s) 269, 750, 851
BmiI GGNNCC 3 cut(s) 460, 580, 653
BmrFI CCNGG 1 cut(s) 610
BmrI ACTGGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 407
BmuI ACTGGG 1 cut(s) 266
BoxI GACNNNNGTC 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 1095
BpuEI CTTGAG 3 cut(s) 221, 557, 1029
BsaAI YACGTR 1 cut(s) 139
BsaJI CCNNGG 4 cut(s) 121, 503, 609, 1134
Bsc4I CCNNNNNNNGG 4 cut(s) 509, 609, 610, 759
Bse118I RCCGGY 2 cut(s) 271, 739
Bse1I ACTGG 3 cut(s) 261, 572, 1078
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 610
BseDI CCNNGG 4 cut(s) 121, 503, 609, 1134
BseGI GGATG 3 cut(s) 314, 393, 915
BseLI CCNNNNNNNGG 4 cut(s) 509, 609, 610, 759
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 915, 1017
BseNI ACTGG 3 cut(s) 261, 572, 1078
BseXI GCAGC 4 cut(s) 185, 766, 769, 1131
BshFI GGCC 3 cut(s) 271, 455, 599
BshNI GGYRCC 1 cut(s) 651
BsiSI CCGG 6 cut(s) 87, 272, 300, 353, 456, 740
BslFI GGGAC 2 cut(s) 776, 987
BslI CCNNNNNNNGG 4 cut(s) 509, 609, 610, 759
BsmAI GTCTC 1 cut(s) 1071
BsmFI GGGAC 2 cut(s) 776, 987
BsnI GGCC 3 cut(s) 271, 455, 599
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 4 cut(s) 280, 578, 888, 930
Bsp19I CCATGG 1 cut(s) 503
BspACI CCGC 5 cut(s) 15, 171, 675, 743, 867
BspANI GGCC 3 cut(s) 271, 455, 599
BspCNI CTCAG 2 cut(s) 916, 1018
BspLI GGNNCC 3 cut(s) 460, 580, 653
BspMAI CTGCAG 1 cut(s) 705
BspPI GGATC 2 cut(s) 573, 586
BspT107I GGYRCC 1 cut(s) 651
BsrDI GCAATG 1 cut(s) 363
BsrFI RCCGGY 2 cut(s) 271, 739
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 3 cut(s) 261, 572, 1078
BssAI RCCGGY 2 cut(s) 271, 739
BssECI CCNNGG 4 cut(s) 121, 503, 609, 1134
BssMI GATC 4 cut(s) 280, 578, 888, 930
BssT1I CCWWGG 2 cut(s) 503, 1134
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 2 cut(s) 122, 451
Bst6I CTCTTC 1 cut(s) 641
BstAPI GCANNNNNTGC 2 cut(s) 179, 188
BstAUI TGTACA 1 cut(s) 477
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 3 cut(s) 159, 741, 793
BstDEI CTNAG 3 cut(s) 105, 924, 1026
BstDSI CCRYGG 2 cut(s) 121, 503
BstF5I GGATG 3 cut(s) 314, 393, 915
BstKTI GATC 4 cut(s) 283, 581, 891, 933
BstMAI GTCTC 1 cut(s) 1071
BstMBI GATC 4 cut(s) 280, 578, 888, 930
BstMWI GCNNNNNNNGC 6 cut(s) 173, 179, 188, 542, 605, 788
BstNI CCWGG 1 cut(s) 610
BstNSI RCATGY 1 cut(s) 349
BstPAI GACNNNNGTC 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 608
BstSFI CTRYAG 2 cut(s) 701, 1062
BstV1I GCAGC 4 cut(s) 185, 766, 769, 1131
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 2 cut(s) 578, 930
BstYI RGATCY 2 cut(s) 578, 930
BsuRI GGCC 3 cut(s) 271, 455, 599
BtgI CCRYGG 2 cut(s) 121, 503
BtsCI GGATG 3 cut(s) 314, 393, 915
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 2 cut(s) 456, 642
Cac8I GCNNGC 3 cut(s) 159, 741, 793
CaiI CAGNNNCTG 1 cut(s) 854
Cfr10I RCCGGY 2 cut(s) 271, 739
Cfr13I GGNCC 3 cut(s) 269, 750, 851
Csp6I GTAC 7 cut(s) 254, 478, 652, 959, 1000, 1009, 1059
CviQI GTAC 7 cut(s) 254, 478, 652, 959, 1000, 1009, 1059
DdeI CTNAG 3 cut(s) 105, 924, 1026
DpnI GATC 4 cut(s) 282, 580, 890, 932
DpnII GATC 4 cut(s) 280, 578, 888, 930
DraIII CACNNNGTG 1 cut(s) 139
EaeI YGGCCR 2 cut(s) 453, 597
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Eco130I CCWWGG 2 cut(s) 503, 1134
Eco47I GGWCC 2 cut(s) 750, 851
EcoO109I RGGNCCY 1 cut(s) 851
EcoRII CCWGG 1 cut(s) 608
EcoT14I CCWWGG 2 cut(s) 503, 1134
ErhI CCWWGG 2 cut(s) 503, 1134
FaqI GGGAC 2 cut(s) 776, 987
FauI CCCGC 1 cut(s) 8
FauNDI CATATG 1 cut(s) 787
FbaI TGATCA 2 cut(s) 280, 888
Fnu4HI GCNGC 5 cut(s) 174, 744, 780, 783, 1120
FokI GGATG 3 cut(s) 301, 400, 902
Fsp4HI GCNGC 5 cut(s) 174, 744, 780, 783, 1120
FspBI CTAG 1 cut(s) 540
GluI GCNGC 5 cut(s) 174, 744, 780, 783, 1120
GsuI CTGGAG 1 cut(s) 1095
HaeIII GGCC 3 cut(s) 271, 455, 599
HapII CCGG 6 cut(s) 87, 272, 300, 353, 456, 740
HinfI GANTC 1 cut(s) 975
HpaII CCGG 6 cut(s) 87, 272, 300, 353, 456, 740
HphI GGTGA 3 cut(s) 664, 847, 856
Hpy166II GTNNAC 2 cut(s) 151, 312
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 151, 312
HpyAV CCTTC 4 cut(s) 172, 334, 403, 782
HpyCH4III ACNGT 2 cut(s) 122, 451
HpyCH4IV ACGT 3 cut(s) 138, 473, 822
HpyCH4V TGCA 8 cut(s) 73, 182, 244, 384, 545, 703, 785, 815
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 179, 188, 542, 605, 788
HpyF3I CTNAG 3 cut(s) 105, 924, 1026
HpySE526I ACGT 3 cut(s) 138, 473, 822
KpnI GGTACC 1 cut(s) 655
KroI GCCGGC 1 cut(s) 739
KroNI GCCGGC 1 cut(s) 741
Ksp22I TGATCA 2 cut(s) 280, 888
Kzo9I GATC 4 cut(s) 280, 578, 888, 930
LmnI GCTCC 2 cut(s) 458, 664
Lsp1109I GCAGC 4 cut(s) 185, 766, 769, 1131
LweI GCATC 1 cut(s) 407
MaeI CTAG 1 cut(s) 540
MaeII ACGT 3 cut(s) 138, 473, 822
MaeIII GTNAC 6 cut(s) 341, 445, 512, 637, 715, 862
MalI GATC 4 cut(s) 282, 580, 890, 932
MboI GATC 4 cut(s) 280, 578, 888, 930
MboII GAAGA 4 cut(s) 254, 418, 658, 940
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 2 cut(s) 578, 930
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 3 cut(s) 74, 441, 963
MluNI TGGCCA 1 cut(s) 599
MlyI GAGTC 1 cut(s) 969
MnlI CCTC 7 cut(s) 198, 550, 642, 680, 888, 935, 1053
Mox20I TGGCCA 1 cut(s) 599
MroNI GCCGGC 1 cut(s) 739
MscI TGGCCA 1 cut(s) 599
MseI TTAA 2 cut(s) 495, 1035
MslI CAYNNNNRTG 4 cut(s) 59, 239, 443, 467
Msp20I TGGCCA 1 cut(s) 599
MspI CCGG 6 cut(s) 87, 272, 300, 353, 456, 740
MspR9I CCNGG 1 cut(s) 610
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 610
MwoI GCNNNNNNNGC 6 cut(s) 173, 179, 188, 542, 605, 788
NaeI GCCGGC 1 cut(s) 741
NcoI CCATGG 1 cut(s) 503
NdeI CATATG 1 cut(s) 787
NdeII GATC 4 cut(s) 280, 578, 888, 930
NgoMIV GCCGGC 1 cut(s) 739
NlaIV GGNNCC 3 cut(s) 460, 580, 653
NmuCI GTSAC 4 cut(s) 445, 512, 637, 862
NspI RCATGY 1 cut(s) 349
OliI CACNNNNGTG 1 cut(s) 443
PdiI GCCGGC 1 cut(s) 741
PflMI CCANNNNNTGG 1 cut(s) 759
PkrI GCNGC 5 cut(s) 175, 745, 781, 784, 1121
PleI GAGTC 1 cut(s) 969
PpsI GAGTC 1 cut(s) 969
Ppu21I YACGTR 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 851
PshAI GACNNNNGTC 1 cut(s) 365
Psp5II RGGWCCY 1 cut(s) 851
Psp6I CCWGG 1 cut(s) 608
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 3 cut(s) 460, 580, 653
PspPI GGNCC 3 cut(s) 269, 750, 851
PspPPI RGGWCCY 1 cut(s) 851
PstI CTGCAG 1 cut(s) 705
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 2 cut(s) 578, 930
RsaI GTAC 7 cut(s) 255, 479, 653, 960, 1001, 1010, 1060
RsaNI GTAC 7 cut(s) 254, 478, 652, 959, 1000, 1009, 1059
RseI CAYNNNNRTG 4 cut(s) 59, 239, 443, 467
SaqAI TTAA 2 cut(s) 495, 1035
SatI GCNGC 5 cut(s) 174, 744, 780, 783, 1120
Sau3AI GATC 4 cut(s) 280, 578, 888, 930
Sau96I GGNCC 3 cut(s) 269, 750, 851
SchI GAGTC 1 cut(s) 969
ScrFI CCNGG 1 cut(s) 610
SfaNI GCATC 1 cut(s) 407
SfcI CTRYAG 2 cut(s) 701, 1062
SinI GGWCC 2 cut(s) 750, 851
SmiMI CAYNNNNRTG 4 cut(s) 59, 239, 443, 467
SmlI CTYRAG 3 cut(s) 200, 572, 1044
SmoI CTYRAG 3 cut(s) 200, 572, 1044
Sse9I AATT 3 cut(s) 74, 441, 963
SsiI CCGC 5 cut(s) 15, 171, 675, 743, 867
SspI AATATT 1 cut(s) 1039
SspMI CTAG 1 cut(s) 540
StyD4I CCNGG 1 cut(s) 608
StyI CCWWGG 2 cut(s) 503, 1134
TaaI ACNGT 2 cut(s) 122, 451
TaiI ACGT 3 cut(s) 141, 476, 825
TaqI TCGA 2 cut(s) 25, 806
TasI AATT 3 cut(s) 74, 441, 963
TatI WGTACW 5 cut(s) 253, 477, 958, 999, 1008
TauI GCSGC 1 cut(s) 746
Tru1I TTAA 2 cut(s) 495, 1035
Tru9I TTAA 2 cut(s) 495, 1035
TscAI CASTG 2 cut(s) 456, 642
TseFI GTSAC 4 cut(s) 445, 512, 637, 862
TseI GCWGC 4 cut(s) 173, 779, 782, 1119
Tsp45I GTSAC 4 cut(s) 445, 512, 637, 862
TspDTI ATGAA 6 cut(s) 22, 107, 229, 419, 792, 904
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 2 cut(s) 456, 642
Van91I CCANNNNNTGG 1 cut(s) 759
VpaK11BI GGWCC 2 cut(s) 750, 851
XceI RCATGY 1 cut(s) 349
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.