Rmu_sc0000171.1_g000019

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000171.1
OG0000470
Physical Location & Seq
Reverse (-)
78778 .. 80772
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000171.1_g000019.1.cds

Sequence Viewer

Length: 336 bp
atgccgtgtgcaggtaagaattcgtggcctgagctcgtcggagccaagggaagggaggcggagagaaaagttgaaagcgagaatgatttagtcgaggctgtcattgtgaaagaaggatcatttgtcactcaagattaccggtgtaaggattcgtggcctgagctggtcggagccaaggcgacagaggcggaggcaaaaattgagagtgagaatgatttagtcaaggttgtcatcgtgaaagaaggatcatatgtcactcatgattttcggtgtaatagggttcgagtttgggtcgataaacatggcaccgtcaccagggtccccacaagtggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

111

Amino Acids

12.35

Weight (kDa)

5.73

Isoelectric Point (pI)

15.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2
AccB1I GGYRCC 1 cut(s) 305
AciI CCGC 2 cut(s) 59, 188
AclWI GGATC 2 cut(s) 124, 253
AcsI RAATTY 1 cut(s) 19
AfiI CCNNNNNNNGG 5 cut(s) 11, 51, 145, 315, 329
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 2 cut(s) 34, 163
AluI AGCT 2 cut(s) 34, 163
Alw21I GWGCWC 1 cut(s) 36
AlwI GGATC 2 cut(s) 124, 253
AoxI GGCC 2 cut(s) 26, 155
ApoI RAATTY 1 cut(s) 19
AsiGI ACCGGT 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 316
BfuAI ACCTGC 1 cut(s) 2
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 5 cut(s) 43, 172, 307, 320, 321
BmrFI CCNGG 1 cut(s) 316
Bpu10I CCTNAGC 2 cut(s) 30, 159
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 45, 174, 315
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 51, 145, 315, 329
Bse118I RCCGGY 1 cut(s) 138
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 3 cut(s) 45, 174, 315
BseLI CCNNNNNNNGG 5 cut(s) 11, 51, 145, 315, 329
BseMII CTCAG 2 cut(s) 21, 150
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 2 cut(s) 28, 157
BshNI GGYRCC 1 cut(s) 305
BshTI ACCGGT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 5 cut(s) 11, 51, 145, 315, 329
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 2 cut(s) 28, 157
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 116, 245
BspACI CCGC 2 cut(s) 59, 188
BspANI GGCC 2 cut(s) 28, 157
BspCNI CTCAG 2 cut(s) 22, 151
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 5 cut(s) 43, 172, 307, 320, 321
BspMI ACCTGC 1 cut(s) 2
BspPI GGATC 2 cut(s) 124, 253
BspT107I GGYRCC 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 45, 174, 315
BssMI GATC 2 cut(s) 116, 245
BssT1I CCWWGG 2 cut(s) 45, 174
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 30, 159
BstKTI GATC 2 cut(s) 119, 248
BstMBI GATC 2 cut(s) 116, 245
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BsuRI GGCC 2 cut(s) 28, 157
BveI ACCTGC 1 cut(s) 2
CciI TCATGA 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 319
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 2 cut(s) 260, 302
CviJI RGCY 7 cut(s) 28, 34, 44, 98, 157, 163, 173
CviKI_1 RGCY 7 cut(s) 28, 34, 44, 98, 157, 163, 173
DdeI CTNAG 2 cut(s) 30, 159
DpnI GATC 2 cut(s) 118, 247
DpnII GATC 2 cut(s) 116, 245
EciI GGCGGA 2 cut(s) 74, 203
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 45, 174
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 314
EcoT14I CCWWGG 2 cut(s) 45, 174
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 45, 174
FaeI CATG 2 cut(s) 263, 305
FaiI YATR 4 cut(s) 250, 252, 261, 303
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 259, 301
FauNDI CATATG 1 cut(s) 250
FriOI GRGCYC 1 cut(s) 36
HaeIII GGCC 2 cut(s) 28, 157
HapII CCGG 1 cut(s) 139
Hin1II CATG 2 cut(s) 263, 305
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 139
HphI GGTGA 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 41, 170
Hpy188III TCNNGA 3 cut(s) 131, 235, 260
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 45, 107, 236
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 30, 159
Hsp92II CATG 2 cut(s) 263, 305
KflI GGGWCCC 1 cut(s) 319
Kzo9I GATC 2 cut(s) 116, 245
LmnI GCTCC 2 cut(s) 41, 170
LpnPI CCDG 6 cut(s) 42, 149, 152, 171, 301, 328
MaeIII GTNAC 3 cut(s) 124, 253, 310
MalI GATC 2 cut(s) 118, 247
MboI GATC 2 cut(s) 116, 245
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 2 cut(s) 19, 198
MmeI TCCRAC 2 cut(s) 19, 148
MnlI CCTC 4 cut(s) 49, 88, 178, 184
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 316
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeI CATATG 1 cut(s) 250
NdeII GATC 2 cut(s) 116, 245
NlaIII CATG 2 cut(s) 263, 305
NlaIV GGNNCC 5 cut(s) 43, 172, 307, 320, 321
NmuCI GTSAC 3 cut(s) 124, 253, 310
PagI TCATGA 1 cut(s) 259
PfeI GAWTC 1 cut(s) 149
PinAI ACCGGT 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 5 cut(s) 43, 172, 307, 320, 321
PspPI GGNCC 1 cut(s) 319
PspPPI RGGWCCY 1 cut(s) 319
SacI GAGCTC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 116, 245
Sau96I GGNCC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 1 cut(s) 36
SetI ASST 4 cut(s) 16, 36, 165, 228
SinI GGWCC 1 cut(s) 319
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 2 cut(s) 19, 198
SsiI CCGC 2 cut(s) 59, 188
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 2 cut(s) 45, 174
TaaI ACNGT 1 cut(s) 310
TaqI TCGA 3 cut(s) 93, 283, 294
TasI AATT 2 cut(s) 19, 198
TfiI GAWTC 1 cut(s) 149
TseFI GTSAC 3 cut(s) 124, 253, 310
Tsp45I GTSAC 3 cut(s) 124, 253, 310
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.