pycom13g18080

Potato inhibitor I family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
14049044 .. 14049948
905 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g18080.1

Sequence Viewer

Length: 519 bp
ATGGGCTCAGAATGCGAAGGTAAGGGTTCGTGGCCAGAGCTTGTGGGAGTGAAGGGGAAGATTGCAAAAGAAACAATTGAGAAAGAGAATCCTATTGTGTCTGCTAAGATTGTAATTGAAGGAGAAACATATGTGATTACCAACTATGACTGCTATAGGGTTTGGGTATGGGTTGACAAAGATGATGGACTTGTCACCAAGCCTCCCATAATTGGGTGTTTGTCAATTTCGTCTGTTTTCATCTTTAGCATAAGCAGAAGAAATATTGGCTCTTTATTATACGAAGCATGGCGGAAAGGGATTCAAAGGGTATTTCTCATAATATGTTGTAGACATCGAAATTTCAGTAAAACAAATGTTCACCAACGCATTAAAGTTTTGACATGTCAGGGCATACATGGCATACGCCACGTGTCGTACAAATTGTACACATGGCATGTGACTCAACAAAATAGGAAGAAATACCCTTGGATGATTAAACAAGTTTTTTTCTTCTCAATTTGGGCAATGACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

20.07

Weight (kDa)

9.67

Isoelectric Point (pI)

20.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 72 2.1e-20 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 331
AciI CCGC 1 cut(s) 292
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 1 cut(s) 340
AcvI CACGTG 1 cut(s) 412
AfaI GTAC 2 cut(s) 419, 428
AfiI CCNNNNNNNGG 2 cut(s) 212, 213
AflIII ACRYGT 2 cut(s) 383, 411
AgsI TTSAA 2 cut(s) 119, 305
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AoxI GGCC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 187, 353
BalI TGGCCA 1 cut(s) 34
BanII GRGCYC 1 cut(s) 8
BbrPI CACGTG 1 cut(s) 412
BccI CCATC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 467
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 213
Bse3DI GCAATG 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 467
BseGI GGATG 1 cut(s) 477
BseLI CCNNNNNNNGG 2 cut(s) 212, 213
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 21
BshFI GGCC 1 cut(s) 34
BslI CCNNNNNNNGG 2 cut(s) 212, 213
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 426
BspACI CCGC 1 cut(s) 292
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 513
BsrGI TGTACA 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 467
BssT1I CCWWGG 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 426
BstBAI YACGTR 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 7, 105
BstF5I GGATG 1 cut(s) 477
BstMWI GCNNNNNNNGC 2 cut(s) 12, 399
BstNSI RCATGY 2 cut(s) 387, 440
BstSFI CTRYAG 1 cut(s) 154
BsuRI GGCC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 477
Csp6I GTAC 2 cut(s) 418, 427
CviAII CATG 5 cut(s) 288, 384, 398, 432, 437
CviJI RGCY 5 cut(s) 6, 34, 40, 202, 270
CviKI_1 RGCY 5 cut(s) 6, 34, 40, 202, 270
CviQI GTAC 2 cut(s) 418, 427
DdeI CTNAG 2 cut(s) 7, 105
EaeI YGGCCR 1 cut(s) 32
EciI GGCGGA 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 8
Eco72I CACGTG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 467
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 467
FaeI CATG 5 cut(s) 291, 387, 401, 435, 440
FatI CATG 5 cut(s) 287, 383, 397, 431, 436
FauNDI CATATG 1 cut(s) 130
FblI GTMKAC 1 cut(s) 331
FokI GGATG 1 cut(s) 484
FriOI GRGCYC 1 cut(s) 8
HaeIII GGCC 1 cut(s) 34
Hin1II CATG 5 cut(s) 291, 387, 401, 435, 440
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 3 cut(s) 88, 301, 442
HphI GGTGA 2 cut(s) 187, 353
Hpy166II GTNNAC 4 cut(s) 175, 332, 361, 429
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 4 cut(s) 175, 332, 361, 429
HpyAV CCTTC 3 cut(s) 11, 46, 113
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 399
HpyF3I CTNAG 2 cut(s) 7, 105
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 5 cut(s) 291, 387, 401, 435, 440
LpnPI CCDG 2 cut(s) 48, 374
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 193, 439
MboII GAAGA 4 cut(s) 70, 270, 469, 484
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 34
MluCI AATT 7 cut(s) 75, 114, 210, 225, 340, 422, 498
MluNI TGGCCA 1 cut(s) 34
MlyI GAGTC 1 cut(s) 436
MnlI CCTC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 34
MscI TGGCCA 1 cut(s) 34
MseI TTAA 2 cut(s) 372, 477
Msp20I TGGCCA 1 cut(s) 34
MunI CAATTG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 12, 399
NdeI CATATG 1 cut(s) 130
NlaIII CATG 5 cut(s) 291, 387, 401, 435, 440
NmuCI GTSAC 2 cut(s) 193, 439
NspI RCATGY 2 cut(s) 387, 440
PciI ACATGT 1 cut(s) 383
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 88, 301
PleI GAGTC 1 cut(s) 436
PmaCI CACGTG 1 cut(s) 412
PmlI CACGTG 1 cut(s) 412
PpsI GAGTC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 412
PscI ACATGT 1 cut(s) 383
PspCI CACGTG 1 cut(s) 412
RsaI GTAC 2 cut(s) 419, 428
RsaNI GTAC 2 cut(s) 418, 427
SaqAI TTAA 2 cut(s) 372, 477
SchI GAGTC 1 cut(s) 436
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 22, 42, 414, 518
SfcI CTRYAG 1 cut(s) 154
Sse9I AATT 7 cut(s) 75, 114, 210, 225, 340, 422, 498
SsiI CCGC 1 cut(s) 292
SspI AATATT 1 cut(s) 265
StyI CCWWGG 1 cut(s) 467
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 337
TasI AATT 7 cut(s) 75, 114, 210, 225, 340, 422, 498
TatI WGTACW 1 cut(s) 426
TfiI GAWTC 2 cut(s) 88, 301
Tru1I TTAA 2 cut(s) 372, 477
Tru9I TTAA 2 cut(s) 372, 477
TseFI GTSAC 2 cut(s) 193, 439
Tsp45I GTSAC 2 cut(s) 193, 439
TspDTI ATGAA 1 cut(s) 229
XapI RAATTY 1 cut(s) 340
XceI RCATGY 2 cut(s) 387, 440
XmiI GTMKAC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.