RchiOBHm_Chr4g0390821

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000470
Physical Location & Seq
Forward (+)
6104155 .. 6104361
207 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36375

Sequence Viewer

Length: 207 bp
ATGCCGTGTGCAGGTAAGAATTCGTGGCCTGAGCTCGTCGGAGCCAAGGGAAGGGAGGCGGAGAGAAAAGTTGAAAGCGAGAATGATTTAGTCGAGGCTGTCATTGTGAAAGAAGGGTCATTTGTCACTCAAGATTACCGGTGTGATAGGGTTCGAATTTGGGTCGATAGACATGGCACTGTCACCAGAGTCCCTACAATTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

68

Amino Acids

7.64

Weight (kDa)

6.56

Isoelectric Point (pI)

12.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 6 - 68 4.6e-26 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2
AciI CCGC 1 cut(s) 59
AcsI RAATTY 2 cut(s) 19, 156
AfiI CCNNNNNNNGG 3 cut(s) 11, 51, 200
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 36
AoxI GGCC 1 cut(s) 26
ApoI RAATTY 2 cut(s) 19, 156
AsiGI ACCGGT 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 175
AsuII TTCGAA 1 cut(s) 154
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 2
BmiI GGNNCC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 51, 200
Bse118I RCCGGY 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 45
BseLI CCNNNNNNNGG 3 cut(s) 11, 51, 200
BseMII CTCAG 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 28
BshTI ACCGGT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 3 cut(s) 11, 51, 200
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 28
Bsp119I TTCGAA 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 36
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 43
BspMI ACCTGC 1 cut(s) 2
BspT104I TTCGAA 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 2
Cfr10I RCCGGY 1 cut(s) 138
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 1 cut(s) 173
CviJI RGCY 4 cut(s) 28, 34, 44, 98
CviKI_1 RGCY 4 cut(s) 28, 34, 44, 98
DdeI CTNAG 1 cut(s) 30
EciI GGCGGA 1 cut(s) 74
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 176
FaiI YATR 1 cut(s) 174
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 139
Hin1II CATG 1 cut(s) 176
HinfI GANTC 1 cut(s) 189
HpaII CCGG 1 cut(s) 139
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 45, 107
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 176
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 3 cut(s) 42, 152, 199
MaeIII GTNAC 2 cut(s) 124, 181
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 3 cut(s) 19, 156, 198
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 2 cut(s) 49, 88
MspI CCGG 1 cut(s) 139
MunI CAATTG 1 cut(s) 198
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 2 cut(s) 124, 181
NspV TTCGAA 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 138
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 43
SacI GAGCTC 1 cut(s) 36
SchI GAGTC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 36
SetI ASST 2 cut(s) 16, 36
SfuI TTCGAA 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 3 cut(s) 19, 156, 198
SsiI CCGC 1 cut(s) 59
SstI GAGCTC 1 cut(s) 36
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 3 cut(s) 93, 154, 165
TasI AATT 3 cut(s) 19, 156, 198
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 2 cut(s) 124, 181
Tsp45I GTSAC 2 cut(s) 124, 181
TspRI CASTG 1 cut(s) 184
XapI RAATTY 2 cut(s) 19, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.