AT5G43570

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000470
Physical Location & Seq
Forward (+)
17506400 .. 17507641
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43570.1

Sequence Viewer

Length: 312 bp
ATGTCGGACGTTTGCCAAAATACTGCAGGAGAAGGGATGAAGAGCTCATGGCCTGAATTGGTGGGGAGAAGAGGAGAAGAAGTCAAAGAGATCATCGATAGAGAGAACACGAAAGTGACGGCCAAGATTATATCTGAAAATGCAGTTGTTTTGGCTGTTGTAATTTGTGATAGGGTTTATGTTCGTGTCAATGACCAAGGCATTGTCACAAGAACCCCTATTTCGTTGGCTAATTTAATTGTTATATATATATATATATATATATATATATGTGTGTGTGTGTGTGAATCAATTATGGATCTTAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

103

Amino Acids

11.56

Weight (kDa)

4.85

Isoelectric Point (pI)

18.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 14 - 74 1.9e-18 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 306
AcoI YGGCCR 1 cut(s) 120
AleI CACNNNNGTG 1 cut(s) 113
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw21I GWGCWC 1 cut(s) 47
AlwI GGATC 1 cut(s) 306
AoxI GGCC 2 cut(s) 50, 120
BanII GRGCYC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 24
Bsa29I ATCGAT 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 87
BshFI GGCC 2 cut(s) 52, 122
BshVI ATCGAT 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 47
BsnI GGCC 2 cut(s) 52, 122
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 2 cut(s) 90, 298
BspANI GGCC 2 cut(s) 52, 122
BspDI ATCGAT 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 1 cut(s) 306
BspQI GCTCTTC 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 90, 298
BssT1I CCWWGG 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 35, 64
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 2 cut(s) 93, 301
BstMBI GATC 2 cut(s) 90, 298
BstSFI CTRYAG 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 2 cut(s) 52, 122
BsuTUI ATCGAT 1 cut(s) 96
BtsCI GGATG 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 96
CviAII CATG 1 cut(s) 48
CviJI RGCY 5 cut(s) 45, 52, 122, 155, 230
CviKI_1 RGCY 5 cut(s) 45, 52, 122, 155, 230
DpnI GATC 2 cut(s) 92, 300
DpnII GATC 2 cut(s) 90, 298
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 35, 64
EarI CTCTTC 2 cut(s) 35, 64
Ecl136II GAGCTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 1 cut(s) 51
FatI CATG 1 cut(s) 47
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 47
HaeIII GGCC 2 cut(s) 52, 122
Hin1II CATG 1 cut(s) 51
HinfI GANTC 1 cut(s) 287
Hpy188I TCNGA 2 cut(s) 7, 136
HpyAV CCTTC 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 26, 143
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 51
Kzo9I GATC 2 cut(s) 90, 298
LguI GCTCTTC 1 cut(s) 35
LpnPI CCDG 2 cut(s) 12, 66
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 115, 205
MalI GATC 2 cut(s) 92, 300
MboI GATC 2 cut(s) 90, 298
MboII GAAGA 3 cut(s) 52, 81, 89
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 5 cut(s) 56, 162, 232, 237, 291
MnlI CCTC 1 cut(s) 65
MseI TTAA 2 cut(s) 236, 303
MslI CAYNNNNRTG 1 cut(s) 113
NdeII GATC 2 cut(s) 90, 298
NlaIII CATG 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 115, 205
OliI CACNNNNGTG 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 236, 303
Sau3AI GATC 2 cut(s) 90, 298
SduI GDGCHC 1 cut(s) 47
SetI ASST 2 cut(s) 12, 47
SfcI CTRYAG 1 cut(s) 24
SgeI CNNG 8 cut(s) 39, 60, 65, 121, 136, 197, 209, 222
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 5 cut(s) 56, 162, 232, 237, 291
SstI GAGCTC 1 cut(s) 47
StyI CCWWGG 1 cut(s) 196
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 96
TasI AATT 5 cut(s) 56, 162, 232, 237, 291
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 236, 303
Tru9I TTAA 2 cut(s) 236, 303
TseFI GTSAC 2 cut(s) 115, 205
Tsp45I GTSAC 2 cut(s) 115, 205
TspDTI ATGAA 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.