MD13G1208300.v1.1

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000470
Physical Location & Seq
Forward (+)
19144829 .. 19145041
213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1208300.v1.1.491

Sequence Viewer

Length: 213 bp
ATGTCATCTGAATGTGAAGGAAAAAATTCATGGCCGGAGCTCGTCGGAGCCAAGGGGAAGGATGCGGAGGCTATAATCGAGAGCGAGAATCGTTTAGTCAATGCCGTGATCGTGAAAAAAGGATCATTTGTCACTATGGATTATCGATGTGATAGAGTTTGGGTTTGGGTCGATAAAAATGGAATTGTCACCCAGATCCCTATAATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

71

Amino Acids

7.78

Weight (kDa)

5.28

Isoelectric Point (pI)

18.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 70 1.3e-27 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 65
AclWI GGATC 2 cut(s) 130, 190
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 206
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 2 cut(s) 130, 190
AoxI GGCC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 181
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 52
Bsa29I ATCGAT 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseCI ATCGAT 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 206
BshFI GGCC 1 cut(s) 34
BshVI ATCGAT 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 206
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 3 cut(s) 108, 122, 195
BspACI CCGC 1 cut(s) 65
BspANI GGCC 1 cut(s) 34
BspDI ATCGAT 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 2 cut(s) 130, 190
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 3 cut(s) 108, 122, 195
BssT1I CCWWGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 3 cut(s) 111, 125, 198
BstMBI GATC 3 cut(s) 108, 122, 195
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 145
BsuRI GGCC 1 cut(s) 34
BsuTUI ATCGAT 1 cut(s) 145
BtsCI GGATG 1 cut(s) 67
ClaI ATCGAT 1 cut(s) 145
CviAII CATG 1 cut(s) 30
CviJI RGCY 4 cut(s) 34, 40, 50, 71
CviKI_1 RGCY 4 cut(s) 34, 40, 50, 71
DpnI GATC 3 cut(s) 110, 124, 197
DpnII GATC 3 cut(s) 108, 122, 195
EaeI YGGCCR 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 33
FaiI YATR 4 cut(s) 31, 74, 137, 203
FatI CATG 1 cut(s) 29
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 35
Hin1II CATG 1 cut(s) 33
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 10, 47
Hpy188III TCNNGA 2 cut(s) 79, 112
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 11, 52
Hsp92II CATG 1 cut(s) 33
Kzo9I GATC 3 cut(s) 108, 122, 195
LmnI GCTCC 2 cut(s) 37, 47
LpnPI CCDG 2 cut(s) 48, 206
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 2 cut(s) 130, 187
MalI GATC 3 cut(s) 110, 124, 197
MboI GATC 3 cut(s) 108, 122, 195
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 3 cut(s) 25, 183, 204
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 1 cut(s) 211
MslI CAYNNNNRTG 1 cut(s) 10
MspI CCGG 1 cut(s) 35
NdeII GATC 3 cut(s) 108, 122, 195
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 2 cut(s) 130, 187
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 10
SacI GAGCTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 211
Sau3AI GATC 3 cut(s) 108, 122, 195
SduI GDGCHC 1 cut(s) 42
SetI ASST 1 cut(s) 42
SfaNI GCATC 1 cut(s) 52
SgeI CNNG 9 cut(s) 42, 47, 53, 64, 91, 97, 118, 124, 205
SmiMI CAYNNNNRTG 1 cut(s) 10
Sse9I AATT 3 cut(s) 25, 183, 204
SsiI CCGC 1 cut(s) 65
SstI GAGCTC 1 cut(s) 42
StyI CCWWGG 1 cut(s) 51
TaqI TCGA 3 cut(s) 78, 145, 171
TasI AATT 3 cut(s) 25, 183, 204
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 211
Tru9I TTAA 1 cut(s) 211
TseFI GTSAC 2 cut(s) 130, 187
Tsp45I GTSAC 2 cut(s) 130, 187
TspDTI ATGAA 1 cut(s) 18
XapI RAATTY 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.