FvH4_4g02880

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000470
Physical Location & Seq
Forward (+)
2566792 .. 2567655
864 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02880.t1

Sequence Viewer

Length: 213 bp
ATGTCTGATCAATGCGAAGGTAAGGATTCATGGCCTGAACTGTTGGGAGCTCAGGGAACAGTTGCAAAGGCAACAATTGAGAGCGAAAACGCTTCGGTCAAAGCAGTGATAGTGCTAGAAGGAACAAGTGTCACTGACGATTTCCGGCTTGATAGGGTTCGTGTTTGGGTCAATACAGAAGGGATTGTCACCAGTGTCCCTAAAATTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

71

Amino Acids

7.51

Weight (kDa)

4.54

Isoelectric Point (pI)

20.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 70 6.6e-25 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 206
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 1 cut(s) 52
AoxI GGCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 181
BanII GRGCYC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 52
BclI TGATCA 1 cut(s) 7
BfaI CTAG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 192
BshFI GGCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 7
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 64
BsrI ACTGG 1 cut(s) 192
BssMI GATC 1 cut(s) 7
Bst4CI ACNGT 2 cut(s) 42, 61
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 3 cut(s) 111, 132, 199
CviAII CATG 1 cut(s) 30
CviJI RGCY 3 cut(s) 34, 50, 148
CviKI_1 RGCY 3 cut(s) 34, 50, 148
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 1 cut(s) 33
FaiI YATR 1 cut(s) 31
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 29
FbaI TGATCA 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 52
FspBI CTAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 145
Hin1II CATG 1 cut(s) 33
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 7
HpyAV CCTTC 3 cut(s) 11, 113, 173
HpyCH4III ACNGT 2 cut(s) 42, 61
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 4 cut(s) 38, 48, 158, 205
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 130, 187
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 2 cut(s) 75, 204
MspI CCGG 1 cut(s) 145
MunI CAATTG 1 cut(s) 75
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 130, 187
PfeI GAWTC 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 52
SacI GAGCTC 1 cut(s) 52
Sau3AI GATC 1 cut(s) 7
SduI GDGCHC 1 cut(s) 52
SetI ASST 2 cut(s) 22, 52
SgeI CNNG 9 cut(s) 42, 47, 65, 128, 138, 157, 161, 173, 204
Sse9I AATT 2 cut(s) 75, 204
SspMI CTAG 1 cut(s) 116
SstI GAGCTC 1 cut(s) 52
TaaI ACNGT 2 cut(s) 42, 61
TaqII GACCGA 1 cut(s) 85
TasI AATT 2 cut(s) 75, 204
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 3 cut(s) 111, 139, 199
TseFI GTSAC 2 cut(s) 130, 187
Tsp45I GTSAC 2 cut(s) 130, 187
TspDTI ATGAA 1 cut(s) 18
TspRI CASTG 3 cut(s) 111, 139, 199
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.