Rmu_sc0000171.1_g000009

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000171.1
OG0000470
Physical Location & Seq
Reverse (-)
45255 .. 45571
317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000171.1_g000009.1.cds

Sequence Viewer

Length: 216 bp
atgtctgatattcaatgcgaaggtaaggattcatggcctgaactgttgggagctgagggaacagttgcaaaggcaacaattgagagcgaaaaccctttagtcgaggcagtgatcgtgctagaaggaacacctgtcactacagatttccggtgtgatagggttcgtgtttgggtcgatacagatggcattgttaccagggtccctgtcattgggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

71

Amino Acids

7.69

Weight (kDa)

4.22

Isoelectric Point (pI)

23.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 194
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AoxI GGCC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 199
AvaII GGWCC 1 cut(s) 199
BbvCI CCTCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 196
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 200, 201
BmrFI CCNGG 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 45
BshFI GGCC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 111
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 200, 201
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 45, 64
BstDEI CTNAG 1 cut(s) 54
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 199
CviAII CATG 1 cut(s) 33
CviJI RGCY 2 cut(s) 37, 53
CviKI_1 RGCY 2 cut(s) 37, 53
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 194
FaeI CATG 1 cut(s) 36
FaiI YATR 1 cut(s) 34
FaqI GGGAC 1 cut(s) 185
FatI CATG 1 cut(s) 32
FspBI CTAG 1 cut(s) 119
HaeIII GGCC 1 cut(s) 37
HapII CCGG 1 cut(s) 148
Hin1II CATG 1 cut(s) 36
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 14, 116
HpyCH4III ACNGT 2 cut(s) 45, 64
HpyCH4V TGCA 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 1 cut(s) 36
KflI GGGWCCC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 5 cut(s) 51, 144, 161, 181, 208
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 133, 190
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MfeI CAATTG 1 cut(s) 78
MluCI AATT 1 cut(s) 78
MnlI CCTC 2 cut(s) 49, 97
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 196
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 196
NdeII GATC 1 cut(s) 111
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 200, 201
NmuCI GTSAC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 29
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 200, 201
PspPI GGNCC 1 cut(s) 199
PspPPI RGGWCCY 1 cut(s) 199
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 196
SetI ASST 3 cut(s) 25, 55, 133
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 199
Sse9I AATT 1 cut(s) 78
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 45, 64
TaqI TCGA 2 cut(s) 102, 174
TasI AATT 1 cut(s) 78
TfiI GAWTC 1 cut(s) 29
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 199
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.