Prupe.1G032500_v2.0.a1

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000470
Physical Location & Seq
Forward (+)
2275504 .. 2276589
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G032500.1

Sequence Viewer

Length: 213 bp
ATGTCAACTGAGTGTCAAGGTAAGGATACATGGCCTGAACTTCTGGGATCTCAGGGGACAGTTGCAGAGGCAACAATTGAGAGGGAGAATTCTTTGGTTGATGCTCAGATCGTGCTAGAAGGGTCGATTGTCACTGCTGATTTCCGGTGCGATAGGGTTCGCGTTTGGGTTAATACTGATGGCATTGTTACAAGGGTCCCTAGTATTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

71

Amino Acids

7.62

Weight (kDa)

4.37

Isoelectric Point (pI)

21.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 162
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 206
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 196
AvaII GGWCC 1 cut(s) 196
BccI CCATC 1 cut(s) 173
BciVI GTATCC 1 cut(s) 19
BfaI CTAG 2 cut(s) 116, 201
BfuI GTATCC 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 197, 198
BmsI GCATC 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 2 cut(s) 65, 119
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 70, 182
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 2 cut(s) 70, 182
BsnI GGCC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 47, 108
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 2 cut(s) 64, 118
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 197, 198
BspPI GGATC 1 cut(s) 55
BssMI GATC 2 cut(s) 47, 108
Bst4CI ACNGT 1 cut(s) 61
BstDEI CTNAG 3 cut(s) 9, 51, 105
BstFNI CGCG 1 cut(s) 162
BstKTI GATC 2 cut(s) 50, 111
BstMBI GATC 2 cut(s) 47, 108
BstUI CGCG 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 196
CviAII CATG 1 cut(s) 30
CviJI RGCY 1 cut(s) 34
CviKI_1 RGCY 1 cut(s) 34
DdeI CTNAG 3 cut(s) 9, 51, 105
DpnI GATC 2 cut(s) 49, 110
DpnII GATC 2 cut(s) 47, 108
Eco47I GGWCC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 88
FaeI CATG 1 cut(s) 33
FaiI YATR 1 cut(s) 31
FaqI GGGAC 2 cut(s) 70, 182
FatI CATG 1 cut(s) 29
FspBI CTAG 2 cut(s) 116, 201
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 145
Hin1II CATG 1 cut(s) 33
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HpaII CCGG 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 108
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 3 cut(s) 9, 51, 105
Hsp92II CATG 1 cut(s) 33
KflI GGGWCCC 1 cut(s) 196
Kzo9I GATC 2 cut(s) 47, 108
LpnPI CCDG 4 cut(s) 29, 38, 48, 158
LweI GCATC 1 cut(s) 91
MaeI CTAG 2 cut(s) 116, 201
MaeIII GTNAC 2 cut(s) 130, 187
MalI GATC 2 cut(s) 49, 110
MboI GATC 2 cut(s) 47, 108
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 1 cut(s) 47
MluCI AATT 2 cut(s) 75, 88
MnlI CCTC 2 cut(s) 61, 75
MseI TTAA 1 cut(s) 171
MspI CCGG 1 cut(s) 145
MunI CAATTG 1 cut(s) 75
MvnI CGCG 1 cut(s) 162
NdeII GATC 2 cut(s) 47, 108
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 2 cut(s) 197, 198
NmuCI GTSAC 1 cut(s) 130
PpuMI RGGWCCY 1 cut(s) 196
Psp5II RGGWCCY 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 197, 198
PspPI GGNCC 1 cut(s) 196
PspPPI RGGWCCY 1 cut(s) 196
PsuI RGATCY 1 cut(s) 47
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 2 cut(s) 47, 108
Sau96I GGNCC 1 cut(s) 196
SetI ASST 1 cut(s) 22
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 1 cut(s) 196
Sse9I AATT 2 cut(s) 75, 88
SspMI CTAG 2 cut(s) 116, 201
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 125
TasI AATT 2 cut(s) 75, 88
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 1 cut(s) 88
XspI CTAG 2 cut(s) 116, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.