Rh4AG033400

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000470
Physical Location & Seq
Forward (+)
7214586 .. 7215308
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG033400.1

Sequence Viewer

Length: 228 bp
ATGGCTGATCAATGCGAAGGTAAGGATTCATGGCCTGAACTGTTGGGAGCTCAGGGGACAATTGCAAAGGAAACAATTGAGAGCGAAAACTCTTTAGTCAAGGCAGAGATAGTGCTAGAAGGAACAATTGTCCCTGCTGATTTCCGGAGACAGTGTGATAGGAATGTCCAAACAGATAAAGATAAGTTGGAGTACAAAACTAAAATGATCACATCTTACCAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

75

Amino Acids

8.47

Weight (kDa)

4.71

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 50 3.5e-12 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 144
AfaI GTAC 1 cut(s) 194
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 142
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 52
BclI TGATCA 2 cut(s) 7, 207
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
BseAI TCCGGA 1 cut(s) 144
BseMII CTCAG 1 cut(s) 65
BshFI GGCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 70, 116
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 2 cut(s) 70, 116
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 52
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 2 cut(s) 7, 207
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 64
BspEI TCCGGA 1 cut(s) 144
BssMI GATC 2 cut(s) 7, 207
Bst4CI ACNGT 2 cut(s) 42, 153
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 2 cut(s) 10, 210
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 2 cut(s) 7, 207
BsuRI GGCC 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 158
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 30
CviJI RGCY 3 cut(s) 5, 34, 50
CviKI_1 RGCY 3 cut(s) 5, 34, 50
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 9, 209
DpnII GATC 2 cut(s) 7, 207
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 1 cut(s) 33
FaiI YATR 1 cut(s) 31
FaqI GGGAC 2 cut(s) 70, 116
FatI CATG 1 cut(s) 29
FbaI TGATCA 2 cut(s) 7, 207
FriOI GRGCYC 1 cut(s) 52
FspBI CTAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 145
Hin1II CATG 1 cut(s) 33
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 11, 113
HpyCH4III ACNGT 2 cut(s) 42, 153
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 33
Kpn2I TCCGGA 1 cut(s) 144
Ksp22I TGATCA 2 cut(s) 7, 207
Kzo9I GATC 2 cut(s) 7, 207
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 4 cut(s) 38, 48, 147, 158
MaeI CTAG 1 cut(s) 116
MalI GATC 2 cut(s) 9, 209
MboI GATC 2 cut(s) 7, 207
MfeI CAATTG 3 cut(s) 60, 75, 126
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 3 cut(s) 60, 75, 126
MmeI TCCRAC 1 cut(s) 168
MroI TCCGGA 1 cut(s) 144
MseI TTAA 1 cut(s) 226
MspI CCGG 1 cut(s) 145
MunI CAATTG 3 cut(s) 60, 75, 126
NdeII GATC 2 cut(s) 7, 207
NlaIII CATG 1 cut(s) 33
PfeI GAWTC 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 52
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SacI GAGCTC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 226
Sau3AI GATC 2 cut(s) 7, 207
SduI GDGCHC 1 cut(s) 52
SetI ASST 2 cut(s) 22, 52
SgeI CNNG 7 cut(s) 42, 47, 65, 112, 128, 146, 157
Sse9I AATT 3 cut(s) 60, 75, 126
SspMI CTAG 1 cut(s) 116
SstI GAGCTC 1 cut(s) 52
TaaI ACNGT 2 cut(s) 42, 153
TasI AATT 3 cut(s) 60, 75, 126
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
TscAI CASTG 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 18
TspRI CASTG 1 cut(s) 158
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.