Rroxscaffold_5G00336740

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000470
Physical Location & Seq
Forward (+)
4580667 .. 4582019
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336740.1

Sequence Viewer

Length: 225 bp
ATGAATCAGGTTAATAATTGTGATGAGGCATGTAAGAATTCGTGGCCTGAGCTCGTCGGAGCCAAGGGAAGGGAGGCGGAGAGAAAAGTTGAAAGCGAGAATGATTTAGTCGAGGCTGTCATTGTGAAAGAAGGATCATTTGTCACTCAAGATTACCGGTGTGATAGGGTTCGAATTTGGGTCGATAGACATGGCACTGTCACCAGAGTCCCTACAATTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

74

Amino Acids

8.41

Weight (kDa)

5.33

Isoelectric Point (pI)

14.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 12 - 74 6.4e-26 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 2 cut(s) 37, 174
AfiI CCNNNNNNNGG 2 cut(s) 69, 218
AgeI ACCGGT 1 cut(s) 156
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw21I GWGCWC 1 cut(s) 54
AlwI GGATC 1 cut(s) 142
AoxI GGCC 1 cut(s) 44
ApoI RAATTY 2 cut(s) 37, 174
AsiGI ACCGGT 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 193
AsuII TTCGAA 1 cut(s) 172
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 48
Bpu14I TTCGAA 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 218
Bse118I RCCGGY 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 69, 218
BseMII CTCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 46
BshTI ACCGGT 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 69, 218
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 134
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 1 cut(s) 142
BspT104I TTCGAA 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 199
BstBI TTCGAA 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 1 cut(s) 137
BstMBI GATC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 33
BsuRI GGCC 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 156
CspAI ACCGGT 1 cut(s) 156
CviAII CATG 2 cut(s) 30, 191
CviJI RGCY 4 cut(s) 46, 52, 62, 116
CviKI_1 RGCY 4 cut(s) 46, 52, 62, 116
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 33, 194
FaiI YATR 2 cut(s) 31, 192
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 29, 190
FriOI GRGCYC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 157
Hin1II CATG 2 cut(s) 33, 194
HinfI GANTC 2 cut(s) 4, 207
HpaII CCGG 1 cut(s) 157
HphI GGTGA 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 1 cut(s) 149
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 63, 125
HpyCH4III ACNGT 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 2 cut(s) 33, 194
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 3 cut(s) 60, 170, 217
MaeIII GTNAC 2 cut(s) 142, 199
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MfeI CAATTG 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 4 cut(s) 16, 37, 174, 216
MlyI GAGTC 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 3 cut(s) 19, 67, 106
MseI TTAA 1 cut(s) 12
MspI CCGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 216
NdeII GATC 1 cut(s) 134
NlaIII CATG 2 cut(s) 33, 194
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 142, 199
NspI RCATGY 1 cut(s) 33
NspV TTCGAA 1 cut(s) 172
PfeI GAWTC 1 cut(s) 4
PinAI ACCGGT 1 cut(s) 156
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 61
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 1 cut(s) 134
SchI GAGTC 1 cut(s) 216
SduI GDGCHC 1 cut(s) 54
SetI ASST 2 cut(s) 12, 54
SfuI TTCGAA 1 cut(s) 172
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 4 cut(s) 16, 37, 174, 216
SsiI CCGC 1 cut(s) 77
SstI GAGCTC 1 cut(s) 54
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 3 cut(s) 111, 172, 183
TasI AATT 4 cut(s) 16, 37, 174, 216
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 2 cut(s) 142, 199
Tsp45I GTSAC 2 cut(s) 142, 199
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 202
XapI RAATTY 2 cut(s) 37, 174
XceI RCATGY 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.