MD13G1208400.v1.1

Potato inhibitor I family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
19147665 .. 19148254
590 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1208400.v1.1.491

Sequence Viewer

Length: 231 bp
ATGGCATCTGAGCAATGTGAGGGCAGTGAAGGTAAGTATGTATGGCCTGAGCTGTTGGGAGCCAAGGGTACCGTTGCGAAGGCAACAATTAAGAGGGAGAATTCCACTGTCAAGGTTGAGATCGTGGTAGAAGGAACCATTGTACCAGCAGATTTGCGATGTGTAGCTGATAGGGTTCGTGTTTGGGTCGATACAGATGGCTTTGTTACTAGGGTGCCTATCATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.25

Weight (kDa)

5.33

Isoelectric Point (pI)

16.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 12 - 76 1.5e-20 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 68
AccB1I GGYRCC 2 cut(s) 68, 214
AcsI RAATTY 1 cut(s) 100
AfaI GTAC 2 cut(s) 70, 144
AfiI CCNNNNNNNGG 1 cut(s) 224
AluBI AGCT 2 cut(s) 52, 167
AluI AGCT 2 cut(s) 52, 167
AoxI GGCC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 100
Asp718I GGTACC 1 cut(s) 68
BaeI ACNNNNGTAYC 2 cut(s) 126, 159
BanI GGYRCC 2 cut(s) 68, 214
BccI CCATC 1 cut(s) 191
BfaI CTAG 1 cut(s) 210
BmiI GGNNCC 4 cut(s) 61, 70, 136, 216
BmsI GCATC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 2 cut(s) 68, 214
BslI CCNNNNNNNGG 1 cut(s) 224
BsnI GGCC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 120
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 4 cut(s) 61, 70, 136, 216
BspT107I GGYRCC 2 cut(s) 68, 214
BsrDI GCAATG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 73, 109
BstDEI CTNAG 2 cut(s) 9, 48
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 46
BtgZI GCGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 31, 105
Csp6I GTAC 2 cut(s) 69, 143
CviJI RGCY 5 cut(s) 46, 52, 62, 167, 201
CviKI_1 RGCY 5 cut(s) 46, 52, 62, 167, 201
CviQI GTAC 2 cut(s) 69, 143
DdeI CTNAG 2 cut(s) 9, 48
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaiI YATR 2 cut(s) 39, 43
FspBI CTAG 1 cut(s) 210
HaeIII GGCC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 23, 73, 125
HpyCH4III ACNGT 2 cut(s) 73, 109
HpyF3I CTNAG 2 cut(s) 9, 48
KpnI GGTACC 1 cut(s) 72
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 2 cut(s) 60, 159
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MluCI AATT 2 cut(s) 87, 100
MnlI CCTC 2 cut(s) 13, 87
MseI TTAA 2 cut(s) 90, 229
NdeII GATC 1 cut(s) 120
NlaIV GGNNCC 4 cut(s) 61, 70, 136, 216
PspN4I GGNNCC 4 cut(s) 61, 70, 136, 216
RsaI GTAC 2 cut(s) 70, 144
RsaNI GTAC 2 cut(s) 69, 143
SaqAI TTAA 2 cut(s) 90, 229
Sau3AI GATC 1 cut(s) 120
SetI ASST 4 cut(s) 34, 54, 117, 169
SfaNI GCATC 1 cut(s) 14
SgeI CNNG 7 cut(s) 59, 76, 124, 136, 158, 191, 222
Sse9I AATT 2 cut(s) 87, 100
SspMI CTAG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 73, 109
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 87, 100
Tru1I TTAA 2 cut(s) 90, 229
Tru9I TTAA 2 cut(s) 90, 229
TscAI CASTG 2 cut(s) 31, 112
TspRI CASTG 2 cut(s) 31, 112
XapI RAATTY 1 cut(s) 100
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.