Rroxscaffold_5G00336770

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000470
Physical Location & Seq
Forward (+)
4595750 .. 4596149
400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336770.1

Sequence Viewer

Length: 213 bp
ATGTCCGATCAATGCGAAGGTAAGGATTCATGGCCTGAACTGTTGGGAGCTGAGGGAACAGTTGCAAAGGCAACAATTGAGAGCGAAAACTCTTTAGTCGAGGCAGTGATCGTGCTAGAAGGAACACCTGTCACTAGAGATTTCCGGTGTGATAGGGTTCGTGTTTGGGTCGATACAGATGGCATTGTTACCAGGGTCCCTGTCATTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

70

Amino Acids

7.62

Weight (kDa)

4.36

Isoelectric Point (pI)

24.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 70 1.9e-26 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 206
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
AoxI GGCC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 196
AvaII GGWCC 1 cut(s) 196
BbvCI CCTCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 193
BfaI CTAG 2 cut(s) 116, 135
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 197, 198
BmrFI CCNGG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 7, 108
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 197, 198
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 7, 108
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 42, 61
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 2 cut(s) 10, 111
BstMBI GATC 2 cut(s) 7, 108
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 196
CviAII CATG 1 cut(s) 30
CviJI RGCY 2 cut(s) 34, 50
CviKI_1 RGCY 2 cut(s) 34, 50
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 9, 110
DpnII GATC 2 cut(s) 7, 108
Eco47I GGWCC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 191
FaeI CATG 1 cut(s) 33
FaiI YATR 1 cut(s) 31
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 29
FspBI CTAG 2 cut(s) 116, 135
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 145
Hin1II CATG 1 cut(s) 33
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 11, 113
HpyCH4III ACNGT 2 cut(s) 42, 61
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 33
KflI GGGWCCC 1 cut(s) 196
Kzo9I GATC 2 cut(s) 7, 108
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 48, 141, 158, 178, 205
MaeI CTAG 2 cut(s) 116, 135
MaeIII GTNAC 2 cut(s) 130, 187
MalI GATC 2 cut(s) 9, 110
MboI GATC 2 cut(s) 7, 108
MfeI CAATTG 1 cut(s) 75
MluCI AATT 1 cut(s) 75
MnlI CCTC 2 cut(s) 46, 94
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 193
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 193
NdeII GATC 2 cut(s) 7, 108
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 2 cut(s) 197, 198
NmuCI GTSAC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 196
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 197, 198
PspPI GGNCC 1 cut(s) 196
PspPPI RGGWCCY 1 cut(s) 196
Sau3AI GATC 2 cut(s) 7, 108
Sau96I GGNCC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 193
SetI ASST 3 cut(s) 22, 52, 130
SinI GGWCC 1 cut(s) 196
Sse9I AATT 1 cut(s) 75
SspMI CTAG 2 cut(s) 116, 135
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 42, 61
TaqI TCGA 2 cut(s) 99, 171
TasI AATT 1 cut(s) 75
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 18
TspRI CASTG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 196
XspI CTAG 2 cut(s) 116, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.