FvH4_4g02840

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000470
Physical Location & Seq
Forward (+)
2543814 .. 2544224
411 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02840.t1

Sequence Viewer

Length: 219 bp
ATGCGGTGTGCAGGTAAGGATTTCTGGCCTGAGCTTCTGGGAGCCAAGGCAAGAGAGGCAAGAAGCAAAATTGAGAGCGAGAATGATTTAGTCAAGGTTGTCATCGTGAAAGAAGGAACATTTGTCACTCATGACTACCGGTGTGATAGAGTTCGAGTTTGGGTCGATAAACACGGCACCGTCACCAGGGTCCCTACACTATCTGCCAGCTATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

73

Amino Acids

8.24

Weight (kDa)

9.1

Isoelectric Point (pI)

14.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 6 - 66 8.2e-24 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 186
AgeI ACCGGT 1 cut(s) 138
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 2 cut(s) 34, 210
AluI AGCT 2 cut(s) 34, 210
AoxI GGCC 1 cut(s) 26
AsiGI ACCGGT 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 2
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 4 cut(s) 43, 178, 191, 192
BmrFI CCNGG 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 45, 186
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 138
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 45, 186
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 176
BshTI ACCGGT 1 cut(s) 138
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 28
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 4 cut(s) 43, 178, 191, 192
BspMI ACCTGC 1 cut(s) 2
BspT107I GGYRCC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 45, 186
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BsuRI GGCC 1 cut(s) 28
BveI ACCTGC 1 cut(s) 2
Cac8I GCNNGC 1 cut(s) 208
CciI TCATGA 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 190
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 1 cut(s) 131
CviJI RGCY 4 cut(s) 28, 34, 44, 210
CviKI_1 RGCY 4 cut(s) 28, 34, 44, 210
DdeI CTNAG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 134
FaiI YATR 4 cut(s) 132, 213, 215, 217
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 130
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 139
Hin1II CATG 1 cut(s) 134
HpaII CCGG 1 cut(s) 139
HphI GGTGA 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 106, 131
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 134
KflI GGGWCCC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 6 cut(s) 10, 23, 42, 152, 172, 199
MaeIII GTNAC 2 cut(s) 124, 181
MluCI AATT 1 cut(s) 69
MnlI CCTC 1 cut(s) 49
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 56
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 4 cut(s) 43, 178, 191, 192
NmuCI GTSAC 2 cut(s) 124, 181
PagI TCATGA 1 cut(s) 130
PinAI ACCGGT 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 4 cut(s) 43, 178, 191, 192
PspPI GGNCC 1 cut(s) 190
PspPPI RGGWCCY 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 187
SetI ASST 4 cut(s) 16, 36, 99, 212
SinI GGWCC 1 cut(s) 190
Sse9I AATT 1 cut(s) 69
SsiI CCGC 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 154, 165
TasI AATT 1 cut(s) 69
TseFI GTSAC 2 cut(s) 124, 181
Tsp45I GTSAC 2 cut(s) 124, 181
VpaK11BI GGWCC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.