MD13G1208700.v1.1

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000470
Physical Location & Seq
Forward (+)
19181469 .. 19182084
616 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1208700.v1.1.491

Sequence Viewer

Length: 219 bp
ATGGGCTCAGAATGTGAAGGTAAGGGTTCGTGGCCAGAGCTTGTGGGAGTGAAGGGGAAGATTGCAAAAGAAACAATTGAGAAAGAGAATCCTATTGTGACTGCTAAGATTGTAATTGAAGGAGAAACATATGTGATTACCAACTATGACTGCTATAGGGTTTGGGTATGGGTTGACAAAGATGATGGACTTGTCACCAAGCCTCCCATAATTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

73

Amino Acids

8.0

Weight (kDa)

4.82

Isoelectric Point (pI)

13.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 72 1.3e-21 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AoxI GGCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 187
BalI TGGCCA 1 cut(s) 34
BanII GRGCYC 1 cut(s) 8
BccI CCATC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 21
BshFI GGCC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 212
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 8
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 7, 105
BstSFI CTRYAG 1 cut(s) 154
BsuRI GGCC 1 cut(s) 34
CviJI RGCY 5 cut(s) 6, 34, 40, 202, 216
CviKI_1 RGCY 5 cut(s) 6, 34, 40, 202, 216
DdeI CTNAG 2 cut(s) 7, 105
EaeI YGGCCR 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 8
FaiI YATR 6 cut(s) 130, 132, 147, 156, 169, 209
FauNDI CATATG 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 8
HaeIII GGCC 1 cut(s) 34
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 88
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 11, 46, 113
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 7, 105
LpnPI CCDG 1 cut(s) 48
MaeIII GTNAC 2 cut(s) 97, 193
MboII GAAGA 1 cut(s) 70
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 34
MluCI AATT 3 cut(s) 75, 114, 210
MluNI TGGCCA 1 cut(s) 34
MnlI CCTC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 34
MscI TGGCCA 1 cut(s) 34
Msp20I TGGCCA 1 cut(s) 34
MunI CAATTG 1 cut(s) 75
NdeI CATATG 1 cut(s) 130
NmuCI GTSAC 2 cut(s) 97, 193
PfeI GAWTC 1 cut(s) 88
SduI GDGCHC 1 cut(s) 8
SetI ASST 2 cut(s) 22, 42
SfcI CTRYAG 1 cut(s) 154
SgeI CNNG 5 cut(s) 42, 47, 53, 203, 211
Sse9I AATT 3 cut(s) 75, 114, 210
TasI AATT 3 cut(s) 75, 114, 210
TfiI GAWTC 1 cut(s) 88
TseFI GTSAC 2 cut(s) 97, 193
Tsp45I GTSAC 2 cut(s) 97, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.