pycom13g18030

Potato inhibitor I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000470
Physical Location & Seq
Forward (+)
14034753 .. 14034965
213 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g18030.1

Sequence Viewer

Length: 213 bp
ATGTCATCTGAATGTGAAGGAAAGGATTCATGGCCGGAGCTCGTGGGAGCCAAGGGGAAGGATGCCGAGGCTATAATCGAGAGCGAGAATCGTTTAGTCAATGCTGTGATCGTGAAAAAAGGATCATTTGTCACTATGGATTATCGATGTGATAGAGTTTGGGTTTGGGTCGATAAAAATGGAATTGTCACCGAGATCCCTGTAATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

71

Amino Acids

7.77

Weight (kDa)

4.79

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 8 - 70 1.6e-27 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 130, 190
AcoI YGGCCR 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 206
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 2 cut(s) 130, 190
AoxI GGCC 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 181
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 52
Bsa29I ATCGAT 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 51, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseCI ATCGAT 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 51, 66
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 206
BshFI GGCC 1 cut(s) 34
BshVI ATCGAT 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 206
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 3 cut(s) 108, 122, 195
BspANI GGCC 1 cut(s) 34
BspDI ATCGAT 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 2 cut(s) 130, 190
BssECI CCNNGG 2 cut(s) 51, 66
BssMI GATC 3 cut(s) 108, 122, 195
BssSI CACGAG 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 3 cut(s) 111, 125, 198
BstMBI GATC 3 cut(s) 108, 122, 195
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 145
BsuRI GGCC 1 cut(s) 34
BsuTUI ATCGAT 1 cut(s) 145
BtsCI GGATG 1 cut(s) 67
ClaI ATCGAT 1 cut(s) 145
CviAII CATG 1 cut(s) 30
CviJI RGCY 4 cut(s) 34, 40, 50, 71
CviKI_1 RGCY 4 cut(s) 34, 40, 50, 71
DpnI GATC 3 cut(s) 110, 124, 197
DpnII GATC 3 cut(s) 108, 122, 195
EaeI YGGCCR 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 33
FaiI YATR 3 cut(s) 31, 74, 137
FatI CATG 1 cut(s) 29
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 34
HapII CCGG 1 cut(s) 35
Hin1II CATG 1 cut(s) 33
HinfI GANTC 2 cut(s) 26, 88
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 79, 112
HpyAV CCTTC 2 cut(s) 11, 52
Hsp92II CATG 1 cut(s) 33
Kzo9I GATC 3 cut(s) 108, 122, 195
LmnI GCTCC 2 cut(s) 37, 47
LpnPI CCDG 1 cut(s) 48
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 2 cut(s) 130, 187
MalI GATC 3 cut(s) 110, 124, 197
MboI GATC 3 cut(s) 108, 122, 195
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 2 cut(s) 183, 204
MnlI CCTC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 1 cut(s) 211
MslI CAYNNNNRTG 1 cut(s) 10
MspI CCGG 1 cut(s) 35
NdeII GATC 3 cut(s) 108, 122, 195
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 2 cut(s) 130, 187
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 26, 88
Psp124BI GAGCTC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 10
SacI GAGCTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 211
Sau3AI GATC 3 cut(s) 108, 122, 195
SduI GDGCHC 1 cut(s) 42
SetI ASST 1 cut(s) 42
SfaNI GCATC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 10
Sse9I AATT 2 cut(s) 183, 204
SstI GAGCTC 1 cut(s) 42
StyI CCWWGG 1 cut(s) 51
TaqI TCGA 3 cut(s) 78, 145, 171
TasI AATT 2 cut(s) 183, 204
TfiI GAWTC 2 cut(s) 26, 88
Tru1I TTAA 1 cut(s) 211
Tru9I TTAA 1 cut(s) 211
TseFI GTSAC 2 cut(s) 130, 187
Tsp45I GTSAC 2 cut(s) 130, 187
TspDTI ATGAA 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.