FvH4_4g02930

Glu S.griseus protease inhibitor-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000470
Physical Location & Seq
Forward (+)
2582954 .. 2585107
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02930.t1

Sequence Viewer

Length: 600 bp
ATGGATATAGATGGATATGGGAGTCATGGGACAGTTTCAGTCATTCATAGCAATGTGAGATTGGAGAGAACCTCCTTCTCCGTGGACTACCATCATTCCATTAATGGTGTCCATGAAGCAGAACATAAATTGAATGATAAGCAATGCGTAGTAATAAGAATTGTCAACAAAAGAATGAATGGTGGCAGCTTGCTCGATGTGGTCAAGATTTGTGAACGTGTAAATTACTTGGAGGTCAAGTCTGAAGACTCAGATCACATATTGCAACTTTGCAAGCACAAAGACTTTTCCGGCGAGATCACCCAAAACTTCAAACAAAGTATATCTCGCCGGAAAACTGGAAAAAAACGGACTTGCCAGGAAAAGAAGGTGGTCGGGGACGCTGCTGGAGTCTTCTGGGGTAAAGGCTCATGGCCGGAGCTTGTTGGAGAGCACGGGGAGGTTGCCAAAGGGAAAATTGAGAGAGAGAACCCTAATGTGACTGCTAGGATTGTAGTTGACGGAGAAATGTACGTCATTACTGACTACGATTGCTTTAGGGTTTGGGTCTGGGTTGACAAAGATGATGGAACTGTTGTGAAAACTCCCATTATCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
potato_inhibit

Protein Analysis

200

Amino Acids

22.47

Weight (kDa)

7.11

Isoelectric Point (pI)

20.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
potato_inhibit PF00280 135 - 199 9.9e-22 Potato inhibitor I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43570 AT5G43570 AT5G43580
fragaria_vesca FvH4_4g02840 FvH4_4g02850 FvH4_4g02860 FvH4_4g02870 FvH4_4g02880 FvH4_4g02930
malus_domestica MD13G1208300.v1.1 MD13G1208400.v1.1 MD13G1208500.v1.1 MD13G1208700.v1.1 MD16G1210300.v1.1 MD16G1210400.v1.1
prunus_persica Prupe.1G032000_v2.0.a1 Prupe.1G032100_v2.0.a1 Prupe.1G032400_v2.0.a1 Prupe.1G032500_v2.0.a1 Prupe.1G032700_v2.0.a1 Prupe.I000200_v2.0.a1 Prupe.I000300_v2.0.a1
pyrus_communis pycom13g18030 pycom13g18040 pycom13g18050 pycom13g18060 pycom13g18080
rosa_chinensis RchiOBHm_Chr4g0390821 RchiOBHm_Chr4g0390831 RchiOBHm_Chr4g0390841 RchiOBHm_Chr4g0390891 RchiOBHm_Chr4g0390911 RchiOBHm_Chr4g0390921 RchiOBHm_Chr4g0390951 RchiOBHm_Chr4g0390971
rosa_laevigata RLG00000009909
rosa_multiflora Rmu_co8497379.1_g000001 Rmu_sc0000171.1_g000002 Rmu_sc0000171.1_g000003 Rmu_sc0000171.1_g000004 Rmu_sc0000171.1_g000009 Rmu_sc0000171.1_g000010 Rmu_sc0000171.1_g000014 Rmu_sc0000171.1_g000018 Rmu_sc0000171.1_g000019 Rmu_sc0001824.1_g000004 Rmu_sc0016732.1_g000001
rosa_roxburghii Rroxscaffold_5G00336740 Rroxscaffold_5G00336750 Rroxscaffold_5G00336760 Rroxscaffold_5G00336770 Rroxscaffold_5G00336790 Rroxscaffold_5G00336830
rosa_rugosa Rorug03G0331900 Rorug03G0331900 Rorug03G0331900 Rorug03G0332000 Rorug03G0332300 Rorug03G0332500
rosa_samantha Rh4AG033300 Rh4AG033400 Rh4AG033500 Rh4AG033600 Rh4AG033800 Rh4AG034000 Rh4BG027200 Rh4BG027300 Rh4BG027500 Rh4BG027700 Rh4BG027800 Rh4BG028100 Rh4BG028200 Rh4BG028400 Rh4CG036900 Rh4CG037000 Rh4CG037200 Rh4CG037400 Rh4DG030300 Rh4DG030400 Rh4DG030500 Rh4DG030600 Rh4DG030800 Rh4DG031100 Rh4DG031300
rosa_wichuraiana Rw4G002560 Rw4G002580 Rw4G002600 Rw4G002610 Rw4G002620 Rw4G002640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 413
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 2 cut(s) 133, 313
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 2 cut(s) 189, 421
AluI AGCT 2 cut(s) 189, 421
Alw21I GWGCWC 1 cut(s) 435
AoxI GGCC 1 cut(s) 413
ApeKI GCWGC 2 cut(s) 186, 383
AseI ATTAAT 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 292
BbsI GAAGAC 2 cut(s) 252, 385
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 2 cut(s) 198, 370
BccI CCATC 3 cut(s) 5, 99, 560
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 1 cut(s) 359
BfaI CTAG 1 cut(s) 486
BisI GCNGC 2 cut(s) 187, 384
BlsI GCNGC 2 cut(s) 188, 385
Bme1390I CCNGG 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 359
BpiI GAAGAC 2 cut(s) 252, 385
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpmI CTGGAG 1 cut(s) 408
BsaJI CCNNGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 2 cut(s) 58, 149
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 2 cut(s) 58, 149
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 343
BseXI GCAGC 2 cut(s) 198, 370
BshFI GGCC 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 435
BsiSI CCGG 3 cut(s) 291, 331, 416
BslFI GGGAC 2 cut(s) 43, 392
BslI CCNNNNNNNGG 1 cut(s) 593
BsmFI GGGAC 2 cut(s) 43, 392
BsnI GGCC 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 2 cut(s) 253, 297
BspANI GGCC 1 cut(s) 415
BspCNI CTCAG 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 58, 149
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 253, 297
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 34, 574
BstC8I GCNNGC 2 cut(s) 191, 275
BstDEI CTNAG 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 81
BstKTI GATC 2 cut(s) 256, 300
BstMBI GATC 2 cut(s) 253, 297
BstNI CCWGG 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 198, 370
BstV2I GAAGAC 2 cut(s) 252, 385
BsuRI GGCC 1 cut(s) 415
BtgI CCRYGG 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 191, 275
CseI GACGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 511
CviAII CATG 3 cut(s) 26, 113, 411
CviJI RGCY 4 cut(s) 189, 408, 415, 421
CviKI_1 RGCY 4 cut(s) 189, 408, 415, 421
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 1 cut(s) 250
DpnI GATC 2 cut(s) 255, 299
DpnII GATC 2 cut(s) 253, 297
EaeI YGGCCR 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 357
FaeI CATG 3 cut(s) 29, 116, 414
FaiI YATR 9 cut(s) 8, 18, 27, 48, 114, 126, 260, 323, 412
FaqI GGGAC 2 cut(s) 43, 392
FatI CATG 3 cut(s) 25, 112, 410
Fnu4HI GCNGC 2 cut(s) 187, 384
Fsp4HI GCNGC 2 cut(s) 187, 384
FspBI CTAG 1 cut(s) 486
GluI GCNGC 2 cut(s) 187, 384
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 1 cut(s) 415
HapII CCGG 3 cut(s) 291, 331, 416
HgaI GACGC 1 cut(s) 389
Hin1II CATG 3 cut(s) 29, 116, 414
HincII GTYRAC 3 cut(s) 166, 499, 556
HindII GTYRAC 3 cut(s) 166, 499, 556
HinfI GANTC 3 cut(s) 22, 248, 390
HpaII CCGG 3 cut(s) 291, 331, 416
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 5 cut(s) 85, 166, 215, 499, 556
Hpy188I TCNGA 2 cut(s) 244, 253
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 5 cut(s) 85, 166, 215, 499, 556
HpyAV CCTTC 2 cut(s) 85, 361
HpyCH4III ACNGT 2 cut(s) 34, 574
HpyCH4IV ACGT 2 cut(s) 217, 513
HpyCH4V TGCA 2 cut(s) 265, 273
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 2 cut(s) 217, 513
Hsp92II CATG 3 cut(s) 29, 116, 414
Kzo9I GATC 2 cut(s) 253, 297
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 9 cut(s) 304, 324, 344, 344, 371, 372, 382, 429, 535
Lsp1109I GCAGC 2 cut(s) 198, 370
MaeI CTAG 1 cut(s) 486
MaeII ACGT 2 cut(s) 217, 513
MaeIII GTNAC 1 cut(s) 478
MalI GATC 2 cut(s) 255, 299
MboI GATC 2 cut(s) 253, 297
MboII GAAGA 2 cut(s) 257, 385
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 4 cut(s) 128, 159, 223, 456
MlyI GAGTC 3 cut(s) 31, 242, 399
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 3 cut(s) 82, 226, 433
MseI TTAA 2 cut(s) 102, 598
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 3 cut(s) 291, 331, 416
MspR9I CCNGG 1 cut(s) 359
MvaI CCWGG 1 cut(s) 359
NdeII GATC 2 cut(s) 253, 297
NlaIII CATG 3 cut(s) 29, 116, 414
NmuCI GTSAC 1 cut(s) 478
PkrI GCNGC 2 cut(s) 188, 385
PleI GAGTC 3 cut(s) 30, 242, 398
PpsI GAGTC 3 cut(s) 30, 242, 398
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 102, 598
SatI GCNGC 2 cut(s) 187, 384
Sau3AI GATC 2 cut(s) 253, 297
SchI GAGTC 3 cut(s) 31, 242, 399
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 1 cut(s) 435
SetI ASST 8 cut(s) 74, 191, 220, 237, 372, 423, 444, 516
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 4 cut(s) 128, 159, 223, 456
SspMI CTAG 1 cut(s) 486
StyD4I CCNGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 34, 574
TaiI ACGT 2 cut(s) 220, 516
TaqI TCGA 1 cut(s) 195
TasI AATT 4 cut(s) 128, 159, 223, 456
Tru1I TTAA 2 cut(s) 102, 598
Tru9I TTAA 2 cut(s) 102, 598
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 2 cut(s) 186, 383
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 3 cut(s) 35, 129, 191
TspGWI ACGGA 3 cut(s) 70, 364, 516
VspI ATTAAT 1 cut(s) 102
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.